Wall clock time and date at job start Tue Mar 31 2020 08:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53117 * 109.51682 * 200.44180 * 3 2 1 5 5 C 1.53039 * 109.27329 * 177.56139 * 4 3 2 6 6 N 1.46848 * 109.52528 * 300.81504 * 5 4 3 7 7 C 1.38578 * 111.00098 * 185.84384 * 6 5 4 8 8 N 1.31216 * 126.47133 * 299.10088 * 7 6 5 9 9 N 1.28533 * 109.85932 * 180.26144 * 8 7 6 10 10 C 1.30293 * 110.05238 * 359.74400 * 9 8 7 11 11 C 1.50698 * 126.34762 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47265 * 269.96142 * 11 10 9 13 13 C 1.50695 * 109.47454 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00054 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00232 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47214 * 89.99833 * 17 15 13 19 19 H 1.48503 * 109.47255 * 209.99934 * 17 15 13 20 20 H 1.48500 * 109.47479 * 329.99577 * 17 15 13 21 21 N 1.36448 * 126.47414 * 118.93798 * 7 6 5 22 22 C 1.46503 * 127.13907 * 0.02562 * 21 7 6 23 23 C 1.52992 * 109.47318 * 271.10917 * 22 21 7 24 24 C 1.46848 * 111.19522 * 61.74540 * 6 5 4 25 25 C 1.53047 * 109.52141 * 298.25914 * 24 6 5 26 26 H 4.44831 * 5.63057 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.57325 * 80.28163 * 3 2 1 28 28 H 1.08995 * 109.50808 * 57.62109 * 4 3 2 29 29 H 1.09007 * 109.50555 * 297.49587 * 4 3 2 30 30 H 1.09007 * 109.46288 * 180.80026 * 5 4 3 31 31 H 1.09002 * 109.46557 * 60.83491 * 5 4 3 32 32 H 1.08998 * 109.46893 * 29.95931 * 11 10 9 33 33 H 1.09001 * 109.47268 * 149.95890 * 11 10 9 34 34 H 1.09004 * 109.47326 * 300.00342 * 12 11 10 35 35 H 1.09001 * 109.47183 * 59.99696 * 12 11 10 36 36 H 0.96996 * 119.99968 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.47223 * 151.10241 * 22 21 7 38 38 H 1.09006 * 109.46813 * 31.10695 * 22 21 7 39 39 H 1.09002 * 109.47607 * 59.99497 * 23 22 21 40 40 H 1.09006 * 109.46997 * 299.99665 * 23 22 21 41 41 H 1.09006 * 109.47203 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46099 * 58.27263 * 24 6 5 43 43 H 1.09002 * 109.46383 * 178.24360 * 24 6 5 44 44 H 1.08995 * 109.50176 * 299.23590 * 25 24 6 45 45 H 1.09003 * 109.49504 * 179.12179 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1570 1.3532 0.5040 5 6 4.6861 1.3267 0.5595 6 7 5.1261 0.2515 1.4577 7 6 6.5004 0.2823 1.6334 8 7 7.4096 0.1450 0.6973 9 7 8.5838 0.2208 1.2146 10 6 8.4940 0.4148 2.4999 11 6 9.6434 0.5586 3.4639 12 6 10.0297 -0.8190 4.0061 13 6 11.1795 -0.6754 4.9696 14 1 11.5931 0.3009 5.1751 15 6 11.7027 -1.7901 5.5896 16 7 12.7058 -1.6647 6.4309 17 14 10.9869 -3.4786 5.2347 18 1 11.7027 -4.0881 4.0852 19 1 11.1441 -4.3443 6.4311 20 1 9.5449 -3.3459 4.9060 21 7 7.1636 0.4643 2.8119 22 6 6.5729 0.6646 4.1375 23 6 6.3370 2.1581 4.3704 24 6 4.6874 -1.0617 0.9686 25 6 3.1582 -1.1066 0.9253 26 1 -1.0503 -0.0005 0.0000 27 1 3.0113 -0.1725 -1.0122 28 1 2.7599 1.5437 1.5011 29 1 2.8311 2.1413 -0.1748 30 1 5.0527 2.2835 0.9316 31 1 5.0829 1.1500 -0.4402 32 1 10.4970 0.9986 2.9484 33 1 9.3459 1.2040 4.2904 34 1 9.1760 -1.2591 4.5215 35 1 10.3272 -1.4644 3.1796 36 1 13.0737 -2.4489 6.8673 37 1 7.2513 0.2807 4.8993 38 1 5.6229 0.1332 4.1959 39 1 5.6586 2.5421 3.6085 40 1 7.2870 2.6895 4.3119 41 1 5.8971 2.3071 5.3565 42 1 5.0841 -1.2273 -0.0330 43 1 5.0547 -1.8398 1.6378 44 1 2.7611 -0.9548 1.9290 45 1 2.8332 -2.0760 0.5475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341056087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:53 Heat of formation + Delta-G solvation = 122.112217 kcal Electronic energy + Delta-G solvation = -24662.855664 eV Core-core repulsion = 21296.780160 eV Total energy + Delta-G solvation = -3366.075505 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.73267 -39.44264 -35.59962 -35.38946 -33.99372 -32.16011 -31.53434 -31.29875 -30.35498 -28.74267 -25.85218 -25.01166 -23.90959 -23.52788 -21.78557 -21.10659 -20.17442 -19.82600 -18.48217 -17.39331 -16.84581 -16.35513 -15.94413 -15.15963 -14.96221 -14.68269 -14.32701 -14.20881 -14.07048 -14.01102 -13.38176 -13.31274 -13.02614 -12.69519 -12.65162 -12.29700 -11.74763 -11.66160 -11.59500 -11.53715 -11.42589 -11.36927 -11.18390 -11.09009 -10.46677 -10.41227 -10.35396 -10.31276 -10.03169 -9.88738 -9.86277 -9.31761 -8.87627 -8.60656 -8.57175 -6.11557 -4.11127 1.96802 2.40226 2.50068 2.53592 3.13774 3.27884 3.35181 3.38205 3.61344 3.92872 4.39453 4.43399 4.53774 4.67578 4.76936 4.83930 4.85710 4.97103 5.06236 5.07889 5.19338 5.22171 5.24374 5.31550 5.38604 5.49620 5.51710 5.54872 5.57814 5.63205 5.76276 5.76502 5.77667 5.97453 6.01957 6.18645 6.24812 6.31511 6.49842 6.55457 6.82375 7.11129 7.24241 7.30829 7.38023 7.67220 8.42516 8.91591 9.04439 9.50118 11.01292 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.003235 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.084558 B = 8653.946294 C = 8979.962719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.176 4.176 3 C 0.017 3.983 4 C -0.105 4.105 5 C 0.069 3.931 6 N -0.460 5.460 7 C 0.321 3.679 8 N -0.313 5.313 9 N -0.297 5.297 10 C 0.212 3.788 11 C -0.023 4.023 12 C -0.004 4.004 13 C -0.523 4.523 14 H 0.076 0.924 15 C 0.071 3.929 16 N -0.899 5.899 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.268 1.268 21 N -0.462 5.462 22 C 0.106 3.894 23 C -0.163 4.163 24 C 0.066 3.934 25 C -0.105 4.105 26 H 0.216 0.784 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.013 0.987 35 H 0.021 0.979 36 H 0.264 0.736 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.907 5.662 -8.763 26.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.176 4.176 3 C -0.002 4.002 4 C -0.143 4.143 5 C -0.059 4.059 6 N -0.186 5.186 7 C -0.035 4.035 8 N -0.157 5.157 9 N -0.137 5.137 10 C -0.055 4.055 11 C -0.063 4.063 12 C -0.042 4.042 13 C -0.561 4.561 14 H 0.094 0.906 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.705 3.295 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.193 1.193 21 N -0.155 5.155 22 C -0.017 4.017 23 C -0.221 4.221 24 C -0.061 4.061 25 C -0.143 4.143 26 H 0.233 0.767 27 H 0.111 0.889 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.403 5.446 -9.533 25.850 hybrid contribution -0.809 -0.949 0.496 1.342 sum -24.212 4.497 -9.037 26.232 Atomic orbital electron populations 1.24897 0.95894 1.00756 1.01262 1.22982 0.94120 1.00358 1.00134 1.18411 0.84514 0.96518 1.00717 1.21631 0.94054 0.95957 1.02625 1.22115 0.94898 0.93633 0.95212 1.58521 1.04173 1.05672 1.50232 1.22094 0.90941 1.06793 0.83719 1.74492 0.95680 1.19796 1.25729 1.74062 1.14998 1.19408 1.05233 1.25641 0.84266 1.00814 0.94787 1.20246 0.90601 1.01724 0.93732 1.19546 0.97089 0.91217 0.96383 1.21001 1.15105 0.95878 1.24088 0.90577 1.24962 0.94532 0.99011 0.94561 1.69897 1.24763 1.30200 1.28865 0.86814 0.80185 0.84527 0.77963 1.20049 1.21284 1.19315 1.46441 1.06880 1.53367 1.08782 1.21859 1.00275 0.98442 0.81145 1.22090 1.02779 0.94602 1.02645 1.22151 0.94959 0.88754 1.00241 1.21631 0.94008 0.98160 1.00468 0.76706 0.88889 0.90425 0.90453 0.90244 0.92613 0.88684 0.90522 0.96872 0.96098 0.92579 0.88004 0.88596 0.92087 0.91771 0.90404 0.92591 0.90111 0.90407 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.62 19.25 29.55 0.57 -1.05 16 2 C -0.18 -1.54 12.57 -37.12 -0.47 -2.00 16 3 C 0.02 0.13 2.63 -93.28 -0.25 -0.11 16 4 C -0.10 -0.82 5.33 -26.65 -0.14 -0.97 16 5 C 0.07 0.69 5.37 -3.83 -0.02 0.67 16 6 N -0.46 -5.46 4.67 -174.54 -0.82 -6.28 16 7 C 0.32 5.01 6.41 -318.89 -2.05 2.96 16 8 N -0.31 -5.85 12.19 30.31 0.37 -5.48 16 9 N -0.30 -6.11 12.18 32.99 0.40 -5.71 16 10 C 0.21 3.98 7.32 -154.02 -1.13 2.85 16 11 C -0.02 -0.45 5.35 -27.88 -0.15 -0.60 16 12 C 0.00 -0.09 4.02 -27.89 -0.11 -0.20 16 13 C -0.52 -14.30 9.66 -34.44 -0.33 -14.63 16 14 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 17 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 18 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 21 N -0.46 -7.29 2.81 -114.09 -0.32 -7.61 16 22 C 0.11 1.29 6.62 -4.04 -0.03 1.27 16 23 C -0.16 -1.65 10.24 37.15 0.38 -1.27 16 24 C 0.07 0.71 5.39 -3.83 -0.02 0.69 16 25 C -0.10 -0.87 5.33 -26.65 -0.14 -1.01 16 26 H 0.22 0.95 7.80 -54.08 -0.42 0.52 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.08 1.34 7.88 -51.93 -0.41 0.93 16 34 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 35 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.10 1.31 7.80 -51.93 -0.41 0.90 16 38 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 373.46 15.07 5.63 5.63 Total: -1.00 -32.75 373.46 -10.12 -42.87 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -7.50 Total: -2.58 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.98 Total: -11.47 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.41 Total: -51.35 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.75 -10.12 -42.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341056087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.979 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds