Wall clock time and date at job start Tue Mar 31 2020 08:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53117 * 109.51682 * 200.44180 * 3 2 1 5 5 C 1.53039 * 109.27329 * 177.56139 * 4 3 2 6 6 N 1.46848 * 109.52528 * 300.81504 * 5 4 3 7 7 C 1.38578 * 111.00098 * 185.84384 * 6 5 4 8 8 N 1.31216 * 126.47133 * 299.10088 * 7 6 5 9 9 N 1.28533 * 109.85932 * 180.26144 * 8 7 6 10 10 C 1.30293 * 110.05238 * 359.74400 * 9 8 7 11 11 C 1.50698 * 126.34762 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47265 * 269.96142 * 11 10 9 13 13 C 1.50695 * 109.47454 * 179.97438 * 12 11 10 14 14 H 1.08003 * 120.00054 * 0.02562 * 13 12 11 15 15 C 1.37872 * 120.00188 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00232 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99994 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47214 * 89.99833 * 17 15 13 19 19 H 1.48503 * 109.47255 * 209.99934 * 17 15 13 20 20 H 1.48500 * 109.47479 * 329.99577 * 17 15 13 21 21 N 1.36448 * 126.47414 * 118.93798 * 7 6 5 22 22 C 1.46503 * 127.13907 * 0.02562 * 21 7 6 23 23 C 1.52992 * 109.47318 * 271.10917 * 22 21 7 24 24 C 1.46848 * 111.19522 * 61.74540 * 6 5 4 25 25 C 1.53047 * 109.52141 * 298.25914 * 24 6 5 26 26 H 4.44831 * 5.63057 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.57325 * 80.28163 * 3 2 1 28 28 H 1.08995 * 109.50808 * 57.62109 * 4 3 2 29 29 H 1.09007 * 109.50555 * 297.49587 * 4 3 2 30 30 H 1.09007 * 109.46288 * 180.80026 * 5 4 3 31 31 H 1.09002 * 109.46557 * 60.83491 * 5 4 3 32 32 H 1.08998 * 109.46893 * 29.95931 * 11 10 9 33 33 H 1.09001 * 109.47268 * 149.95890 * 11 10 9 34 34 H 1.09004 * 109.47326 * 300.00342 * 12 11 10 35 35 H 1.09001 * 109.47183 * 59.99696 * 12 11 10 36 36 H 0.96996 * 119.99968 * 179.97438 * 16 15 13 37 37 H 1.08992 * 109.47223 * 151.10241 * 22 21 7 38 38 H 1.09006 * 109.46813 * 31.10695 * 22 21 7 39 39 H 1.09002 * 109.47607 * 59.99497 * 23 22 21 40 40 H 1.09006 * 109.46997 * 299.99665 * 23 22 21 41 41 H 1.09006 * 109.47203 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.46099 * 58.27263 * 24 6 5 43 43 H 1.09002 * 109.46383 * 178.24360 * 24 6 5 44 44 H 1.08995 * 109.50176 * 299.23590 * 25 24 6 45 45 H 1.09003 * 109.49504 * 179.12179 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1570 1.3532 0.5040 5 6 4.6861 1.3267 0.5595 6 7 5.1261 0.2515 1.4577 7 6 6.5004 0.2823 1.6334 8 7 7.4096 0.1450 0.6973 9 7 8.5838 0.2208 1.2146 10 6 8.4940 0.4148 2.4999 11 6 9.6434 0.5586 3.4639 12 6 10.0297 -0.8190 4.0061 13 6 11.1795 -0.6754 4.9696 14 1 11.5931 0.3009 5.1751 15 6 11.7027 -1.7901 5.5896 16 7 12.7058 -1.6647 6.4309 17 14 10.9869 -3.4786 5.2347 18 1 11.7027 -4.0881 4.0852 19 1 11.1441 -4.3443 6.4311 20 1 9.5449 -3.3459 4.9060 21 7 7.1636 0.4643 2.8119 22 6 6.5729 0.6646 4.1375 23 6 6.3370 2.1581 4.3704 24 6 4.6874 -1.0617 0.9686 25 6 3.1582 -1.1066 0.9253 26 1 -1.0503 -0.0005 0.0000 27 1 3.0113 -0.1725 -1.0122 28 1 2.7599 1.5437 1.5011 29 1 2.8311 2.1413 -0.1748 30 1 5.0527 2.2835 0.9316 31 1 5.0829 1.1500 -0.4402 32 1 10.4970 0.9986 2.9484 33 1 9.3459 1.2040 4.2904 34 1 9.1760 -1.2591 4.5215 35 1 10.3272 -1.4644 3.1796 36 1 13.0737 -2.4489 6.8673 37 1 7.2513 0.2807 4.8993 38 1 5.6229 0.1332 4.1959 39 1 5.6586 2.5421 3.6085 40 1 7.2870 2.6895 4.3119 41 1 5.8971 2.3071 5.3565 42 1 5.0841 -1.2273 -0.0330 43 1 5.0547 -1.8398 1.6378 44 1 2.7611 -0.9548 1.9290 45 1 2.8332 -2.0760 0.5475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341056087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:52 Heat of formation + Delta-G solvation = 105.361372 kcal Electronic energy + Delta-G solvation = -24663.582036 eV Core-core repulsion = 21296.780160 eV Total energy + Delta-G solvation = -3366.801876 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.06100 -40.28568 -36.84071 -36.37206 -35.61663 -33.85890 -32.49955 -32.06089 -31.44281 -30.21545 -27.44575 -26.07121 -24.94611 -24.29317 -23.36274 -22.39200 -21.43583 -20.87750 -19.10850 -18.99973 -18.33305 -17.52043 -17.15444 -16.37134 -15.85164 -15.83619 -15.67410 -15.24944 -15.10781 -14.90925 -14.81179 -14.69048 -14.43338 -14.07243 -13.51566 -13.43540 -13.22714 -12.99129 -12.59640 -12.46342 -12.34021 -12.29989 -12.25576 -12.19196 -12.10003 -12.01977 -11.81473 -11.51020 -11.43511 -11.11244 -10.96131 -10.93988 -10.78868 -10.00886 -9.92056 -8.30844 -6.34748 0.67825 1.22454 1.33027 1.35467 1.44715 1.72272 1.91363 1.95463 2.32939 2.60205 3.04470 3.33857 3.41287 3.68600 3.70646 3.83267 3.97329 4.05953 4.06995 4.10880 4.26585 4.29634 4.35987 4.44229 4.50379 4.51175 4.61955 4.66252 4.72010 4.72512 4.75364 4.82356 4.87509 4.98614 5.10908 5.15761 5.17431 5.23393 5.27515 5.32516 5.40220 5.51073 5.63022 5.66896 6.20236 6.23685 6.72277 6.74654 7.29818 7.66571 8.85085 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.003235 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.084558 B = 8653.946294 C = 8979.962719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.018 3.982 4 C -0.093 4.093 5 C 0.070 3.930 6 N -0.453 5.453 7 C 0.340 3.660 8 N -0.345 5.345 9 N -0.330 5.330 10 C 0.200 3.800 11 C -0.011 4.011 12 C 0.005 3.995 13 C -0.526 4.526 14 H 0.048 0.952 15 C 0.015 3.985 16 N -0.943 5.943 17 Si 0.940 3.060 18 H -0.275 1.275 19 H -0.279 1.279 20 H -0.254 1.254 21 N -0.458 5.458 22 C 0.098 3.902 23 C -0.155 4.155 24 C 0.067 3.933 25 C -0.093 4.093 26 H 0.242 0.758 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.021 0.979 35 H 0.008 0.992 36 H 0.267 0.733 37 H 0.096 0.904 38 H 0.115 0.885 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.320 5.426 -8.890 29.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.208 4.208 3 C 0.000 4.000 4 C -0.131 4.131 5 C -0.057 4.057 6 N -0.180 5.180 7 C -0.017 4.017 8 N -0.188 5.188 9 N -0.171 5.171 10 C -0.068 4.068 11 C -0.050 4.050 12 C -0.034 4.034 13 C -0.564 4.564 14 H 0.066 0.934 15 C -0.183 4.183 16 N -0.583 5.583 17 Si 0.764 3.236 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.178 1.178 21 N -0.150 5.150 22 C -0.023 4.023 23 C -0.213 4.213 24 C -0.060 4.060 25 C -0.131 4.131 26 H 0.259 0.741 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.096 0.904 31 H 0.064 0.936 32 H 0.106 0.894 33 H 0.113 0.887 34 H 0.039 0.961 35 H 0.026 0.974 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.133 0.867 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.065 0.935 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -26.839 5.224 -9.659 28.999 hybrid contribution 0.176 -0.802 0.520 0.972 sum -26.664 4.422 -9.139 28.531 Atomic orbital electron populations 1.25660 0.96764 0.99396 0.99975 1.23181 0.94583 1.01638 1.01360 1.18359 0.84673 0.96276 1.00681 1.21556 0.91886 0.96477 1.03182 1.22177 0.96549 0.92800 0.94192 1.58825 1.01507 1.06797 1.50821 1.22492 0.92080 1.03950 0.83178 1.74425 0.95721 1.21765 1.26930 1.73963 1.16421 1.20346 1.06322 1.25266 0.85264 1.02055 0.94256 1.19963 0.91015 0.99686 0.94374 1.19377 0.95660 0.93361 0.94956 1.21287 1.15953 0.94731 1.24391 0.93369 1.25802 0.94950 1.03078 0.94471 1.70025 1.26458 1.31475 1.30357 0.85819 0.80088 0.79771 0.77895 1.20022 1.20427 1.17780 1.46629 1.05928 1.52449 1.10027 1.22192 1.00679 1.00287 0.79191 1.22054 1.02391 0.92635 1.04228 1.22189 0.96725 0.87779 0.99334 1.21550 0.91743 0.99011 1.00823 0.74123 0.88787 0.90119 0.89064 0.90402 0.93566 0.89427 0.88703 0.96112 0.97400 0.92358 0.88523 0.86694 0.91812 0.92972 0.87797 0.93543 0.90979 0.90162 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.49 19.25 74.32 1.43 -1.06 16 2 C -0.21 -3.10 12.57 31.13 0.39 -2.71 16 3 C 0.02 0.25 2.63 -12.52 -0.03 0.22 16 4 C -0.09 -1.25 5.33 30.65 0.16 -1.09 16 5 C 0.07 1.30 5.37 86.33 0.46 1.76 16 6 N -0.45 -10.07 4.67 -706.12 -3.30 -13.36 16 7 C 0.34 10.32 6.41 260.12 1.67 11.99 16 8 N -0.34 -12.90 12.19 -58.01 -0.71 -13.61 16 9 N -0.33 -13.72 12.18 -49.54 -0.60 -14.32 16 10 C 0.20 7.46 7.32 137.64 1.01 8.47 16 11 C -0.01 -0.41 5.35 29.85 0.16 -0.25 16 12 C 0.01 0.24 4.02 29.85 0.12 0.36 16 13 C -0.53 -29.16 9.66 25.60 0.25 -28.91 16 14 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 15 C 0.01 0.85 5.47 84.65 0.46 1.32 16 16 N -0.94 -57.68 13.96 21.45 0.30 -57.38 16 17 Si 0.94 44.31 27.47 68.60 1.88 46.20 16 18 H -0.27 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.25 -11.27 6.54 99.48 0.65 -10.61 16 21 N -0.46 -13.95 2.81 -514.87 -1.45 -15.40 16 22 C 0.10 2.19 6.62 86.38 0.57 2.76 16 23 C -0.16 -2.77 10.24 71.98 0.74 -2.03 16 24 C 0.07 1.34 5.39 86.33 0.47 1.80 16 25 C -0.09 -1.35 5.33 30.65 0.16 -1.19 16 26 H 0.24 1.27 7.80 -4.40 -0.03 1.23 16 27 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.08 1.49 8.10 -2.38 -0.02 1.47 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 33 H 0.09 3.27 7.88 -2.39 -0.02 3.25 16 34 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 35 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 36 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 37 H 0.10 2.30 7.80 -2.39 -0.02 2.28 16 38 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.10 1.33 8.14 -2.38 -0.02 1.32 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.57 8.10 -2.39 -0.02 1.56 16 44 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -71.26 373.46 5.04 -66.22 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.89 Total: 10.21 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 8.02 Total: -8.56 kcal Atomic # 7 Polarization: -108.31 SS G_CDS: -5.75 Total: -114.06 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.20 kcal Total: -71.26 5.04 -66.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341056087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.583 kcal (2) G-P(sol) polarization free energy of solvation -71.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds