Wall clock time and date at job start Tue Mar 31 2020 08:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50705 * 119.99637 * 2 1 4 4 N 1.46500 * 109.46845 * 125.78426 * 3 2 1 5 5 C 1.36740 * 127.14106 * 276.05622 * 4 3 2 6 6 C 1.50706 * 126.34318 * 359.95207 * 5 4 3 7 7 H 1.08995 * 109.46939 * 359.97438 * 6 5 4 8 8 C 1.52996 * 109.47211 * 119.99889 * 6 5 4 9 9 C 1.53006 * 109.46449 * 239.99350 * 6 5 4 10 10 C 1.50707 * 109.46780 * 174.99666 * 9 6 5 11 11 H 1.08002 * 119.99784 * 0.02562 * 10 9 6 12 12 C 1.37868 * 119.99941 * 179.97438 * 10 9 6 13 13 N 1.31513 * 120.00063 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00138 * 0.02562 * 12 10 9 15 15 H 1.48507 * 109.46951 * 89.99967 * 14 12 10 16 16 H 1.48498 * 109.47279 * 209.99898 * 14 12 10 17 17 H 1.48501 * 109.47313 * 330.00046 * 14 12 10 18 18 N 1.30299 * 107.30756 * 179.97438 * 5 4 3 19 19 N 1.28520 * 110.05188 * 0.02562 * 18 5 4 20 20 C 1.31217 * 109.86602 * 359.97438 * 19 18 5 21 21 N 1.38576 * 126.47715 * 179.97438 * 20 19 18 22 22 C 1.46847 * 111.00109 * 118.97411 * 21 20 19 23 23 C 1.50147 * 110.27882 * 287.52542 * 22 21 20 24 24 C 1.29819 * 123.28425 * 342.98519 * 23 22 21 25 25 C 1.50305 * 122.89364 * 0.33226 * 24 23 22 26 26 C 1.47242 * 110.99739 * 356.04701 * 21 20 19 27 27 H 1.08003 * 119.99834 * 180.02562 * 1 2 3 28 28 H 1.08000 * 120.00104 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.00104 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47175 * 5.78894 * 3 2 1 31 31 H 1.08998 * 109.47128 * 245.78467 * 3 2 1 32 32 H 1.09004 * 109.46930 * 179.97438 * 8 6 5 33 33 H 1.08997 * 109.47104 * 299.99456 * 8 6 5 34 34 H 1.08997 * 109.47287 * 59.99366 * 8 6 5 35 35 H 1.08992 * 109.47551 * 294.99789 * 9 6 5 36 36 H 1.09002 * 109.47268 * 55.00425 * 9 6 5 37 37 H 0.97001 * 120.00459 * 179.97438 * 13 12 10 38 38 H 1.09001 * 109.33147 * 47.78459 * 22 21 20 39 39 H 1.08999 * 109.34041 * 167.29245 * 22 21 20 40 40 H 1.07998 * 118.35406 * 162.94147 * 23 22 21 41 41 H 1.08000 * 118.55523 * 180.35388 * 24 23 22 42 42 H 1.08999 * 109.42838 * 223.45038 * 25 24 23 43 43 H 1.08994 * 109.39457 * 103.57571 * 25 24 23 44 44 H 1.09007 * 109.63566 * 174.28021 * 26 21 20 45 45 H 1.09005 * 109.63502 * 294.88339 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 3.0070 1.3243 1.1205 5 6 2.7425 1.6695 2.4169 6 6 1.4112 2.1083 2.9703 7 1 0.6693 2.1125 2.1718 8 6 0.9719 1.1397 4.0702 9 6 1.5407 3.5171 3.5532 10 6 0.1848 4.0043 3.9952 11 1 -0.6824 3.3722 3.8730 12 6 0.0515 5.2565 4.5566 13 7 -1.1316 5.6815 4.9427 14 14 1.5516 6.3494 4.7686 15 1 1.7306 7.1853 3.5543 16 1 1.3608 7.2280 5.9506 17 1 2.7557 5.5039 4.9695 18 7 3.8548 1.5493 3.0848 19 7 4.7969 1.1551 2.3045 20 6 4.3324 1.0010 1.0870 21 7 5.0519 0.5886 -0.0232 22 6 4.5064 -0.6605 -0.5696 23 6 4.8379 -1.8126 0.3345 24 6 5.7608 -1.7602 1.2460 25 6 6.5919 -0.5332 1.4966 26 6 6.4775 0.4205 0.3046 27 1 -0.5400 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3596 2.1310 0.1037 31 1 2.6102 1.4091 -0.9372 32 1 0.0091 1.4574 4.4708 33 1 0.8797 0.1362 3.6550 34 1 1.7139 1.1358 4.8686 35 1 2.2157 3.4957 4.4087 36 1 1.9384 4.1896 2.7932 37 1 -1.2253 6.5624 5.3380 38 1 3.4238 -0.5724 -0.6601 39 1 4.9351 -0.8409 -1.5554 40 1 4.2801 -2.7304 0.2213 41 1 5.9395 -2.6371 1.8507 42 1 7.6342 -0.8225 1.6308 43 1 6.2358 -0.0326 2.3970 44 1 7.0034 0.0001 -0.5527 45 1 6.9097 1.3865 0.5655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342035933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:11 Heat of formation + Delta-G solvation = 134.945639 kcal Electronic energy + Delta-G solvation = -25722.335325 eV Core-core repulsion = 22356.816320 eV Total energy + Delta-G solvation = -3365.519006 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82744 -39.45228 -36.35822 -35.26430 -33.29380 -32.58870 -32.07280 -31.08342 -28.90185 -27.49585 -26.88910 -24.86469 -23.96648 -23.62267 -21.64770 -21.38461 -20.11934 -19.13824 -18.51020 -17.16990 -16.81700 -16.46433 -15.88657 -15.23511 -15.13854 -14.77512 -14.30378 -14.04542 -13.95670 -13.77678 -13.43982 -13.29751 -12.70557 -12.64865 -12.38423 -12.25076 -12.07603 -11.90109 -11.67160 -11.28721 -11.15083 -11.03671 -10.81691 -10.72125 -10.31839 -10.06400 -10.03220 -9.96439 -9.75239 -9.66534 -9.37687 -9.17138 -9.01809 -8.53405 -7.97691 -6.05124 -4.03538 1.76072 2.03250 2.10757 2.62182 3.21972 3.34081 3.42304 3.51692 3.71767 4.47894 4.53074 4.57295 4.65852 4.66737 4.76791 4.91543 4.95057 4.98285 5.16990 5.24535 5.29252 5.33834 5.41035 5.43967 5.60024 5.61187 5.65274 5.76512 5.96617 6.02344 6.12263 6.16289 6.21776 6.30008 6.41394 6.44522 6.58103 6.65040 6.69828 6.73462 6.86996 7.03452 7.19762 7.37146 7.43825 7.76124 8.49209 8.97229 9.16459 9.57738 11.07464 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.018551 B = 0.004560 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.997014 B = 6138.205263 C = 6913.716254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.192 4.192 3 C 0.135 3.865 4 N -0.476 5.476 5 C 0.213 3.787 6 C 0.011 3.989 7 H 0.076 0.924 8 C -0.125 4.125 9 C 0.000 4.000 10 C -0.518 4.518 11 H 0.076 0.924 12 C 0.072 3.928 13 N -0.902 5.902 14 Si 0.872 3.128 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.261 1.261 18 N -0.290 5.290 19 N -0.320 5.320 20 C 0.342 3.658 21 N -0.445 5.445 22 C 0.072 3.928 23 C -0.215 4.215 24 C -0.125 4.125 25 C -0.152 4.152 26 C 0.072 3.928 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.114 0.886 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.031 0.969 36 H 0.009 0.991 37 H 0.263 0.737 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.133 0.867 44 H 0.084 0.916 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.846 -15.228 -14.214 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.211 4.211 3 C 0.012 3.988 4 N -0.170 5.170 5 C -0.054 4.054 6 C -0.010 4.010 7 H 0.094 0.906 8 C -0.183 4.183 9 C -0.038 4.038 10 C -0.556 4.556 11 H 0.094 0.906 12 C -0.130 4.130 13 N -0.541 5.541 14 Si 0.699 3.301 15 H -0.204 1.204 16 H -0.213 1.213 17 H -0.185 1.185 18 N -0.127 5.127 19 N -0.164 5.164 20 C -0.014 4.014 21 N -0.167 5.167 22 C -0.055 4.055 23 C -0.235 4.235 24 C -0.143 4.143 25 C -0.190 4.190 26 C -0.055 4.055 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.132 0.868 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.097 0.903 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.150 0.850 44 H 0.103 0.897 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.711 -14.662 -13.370 22.549 hybrid contribution -0.095 -0.074 -0.578 0.590 sum 10.617 -14.736 -13.948 22.900 Atomic orbital electron populations 1.24046 0.95470 1.02982 0.96121 1.23107 0.96461 0.97701 1.03815 1.20971 0.91864 0.97545 0.88424 1.46230 1.08257 1.52183 1.10354 1.25503 0.99641 1.00739 0.79542 1.19710 0.85397 0.98346 0.97596 0.90590 1.21660 1.03018 0.95882 0.97767 1.19604 0.98618 0.89354 0.96217 1.21019 0.92765 1.01306 1.40469 0.90595 1.24925 0.95554 0.97711 0.94774 1.69895 1.22605 1.19435 1.42115 0.86887 0.84498 0.80900 0.77821 1.20440 1.21301 1.18536 1.73982 0.96133 1.17617 1.24936 1.74330 1.23772 1.21139 0.97130 1.22438 0.82883 1.03932 0.92180 1.59472 1.03928 1.29508 1.23839 1.21444 1.01397 0.84840 0.97780 1.22613 1.00636 1.00249 0.99969 1.22256 0.96394 0.98704 0.96979 1.21634 0.99906 0.94670 1.02832 1.22156 0.84847 1.00791 0.97666 0.87649 0.87421 0.86848 0.87719 0.87785 0.90263 0.94831 0.92219 0.95044 0.97288 0.92701 0.88990 0.88416 0.87403 0.87684 0.90572 0.84952 0.89742 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 14.32 29.01 0.42 -0.98 16 2 C -0.19 -1.97 8.90 -36.02 -0.32 -2.29 16 3 C 0.13 1.60 5.30 -5.19 -0.03 1.58 16 4 N -0.48 -7.55 2.78 -115.36 -0.32 -7.87 16 5 C 0.21 4.08 6.58 -154.01 -1.01 3.07 16 6 C 0.01 0.21 2.72 -91.77 -0.25 -0.04 16 7 H 0.08 1.41 7.10 -51.93 -0.37 1.04 16 8 C -0.13 -2.36 8.99 37.16 0.33 -2.03 16 9 C 0.00 0.01 3.50 -27.88 -0.10 -0.09 16 10 C -0.52 -14.17 8.96 -34.44 -0.31 -14.48 16 11 H 0.08 2.17 7.30 -52.49 -0.38 1.79 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 13 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 14 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 18 N -0.29 -6.06 12.18 32.99 0.40 -5.66 16 19 N -0.32 -5.97 8.51 30.32 0.26 -5.71 16 20 C 0.34 5.44 6.25 -318.87 -1.99 3.45 16 21 N -0.45 -5.56 5.04 -175.91 -0.89 -6.45 16 22 C 0.07 0.72 5.74 -5.27 -0.03 0.69 16 23 C -0.22 -2.26 9.59 -35.96 -0.34 -2.60 16 24 C -0.12 -1.41 9.73 -35.89 -0.35 -1.76 16 25 C -0.15 -1.78 5.57 -28.03 -0.16 -1.94 16 26 C 0.07 0.80 5.82 -3.59 -0.02 0.78 16 27 H 0.11 0.83 8.06 -52.48 -0.42 0.41 16 28 H 0.11 1.01 7.84 -52.49 -0.41 0.60 16 29 H 0.11 1.12 6.52 -52.49 -0.34 0.78 16 30 H 0.10 1.26 7.16 -51.93 -0.37 0.89 16 31 H 0.10 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.08 1.56 6.95 -51.93 -0.36 1.20 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 36 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.88 3.53 -51.93 -0.18 0.70 16 39 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.11 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.13 1.99 5.20 -51.93 -0.27 1.72 16 44 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 353.45 15.07 5.33 5.33 Total: -1.00 -32.57 353.45 -10.20 -42.77 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.83 Total: 1.33 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -4.26 Total: -14.66 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.23 Total: -52.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.57 -10.20 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342035933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.717 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds