Wall clock time and date at job start Tue Mar 31 2020 08:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08991 * 109.47324 * 300.48288 * 3 2 1 5 5 C 1.53002 * 109.46680 * 180.48392 * 3 2 1 6 6 N 1.46902 * 109.47375 * 60.48608 * 3 2 1 7 7 C 1.46907 * 110.99761 * 303.95382 * 6 3 2 8 8 C 1.38577 * 111.00447 * 179.97438 * 6 3 2 9 9 N 1.31220 * 126.46960 * 38.57297 * 8 6 3 10 10 N 1.28523 * 109.86097 * 179.97438 * 9 8 6 11 11 C 1.30296 * 110.05084 * 359.72333 * 10 9 8 12 12 C 1.50705 * 126.34925 * 180.31170 * 11 10 9 13 13 C 1.52995 * 109.47155 * 270.15572 * 12 11 10 14 14 C 1.50703 * 109.47283 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99586 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99998 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99867 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00353 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47133 * 89.99533 * 18 16 14 20 20 H 1.48491 * 109.47320 * 209.99673 * 18 16 14 21 21 H 1.48500 * 109.46905 * 329.99860 * 18 16 14 22 22 N 1.36451 * 126.47572 * 218.55701 * 8 6 3 23 23 C 1.46496 * 127.13712 * 0.02562 * 22 8 6 24 24 C 1.50699 * 109.47050 * 84.26096 * 23 22 8 25 25 C 1.30994 * 120.00054 * 94.99982 * 24 23 22 26 26 C 1.50706 * 119.99875 * 275.00334 * 24 23 22 27 27 H 4.18731 * 15.03927 * 0.02562 * 4 2 1 28 28 H 1.08995 * 109.47611 * 60.00244 * 5 3 2 29 29 H 1.09002 * 109.47133 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47224 * 299.99524 * 5 3 2 31 31 H 1.09000 * 109.46629 * 301.17869 * 7 6 3 32 32 H 1.08992 * 109.47193 * 61.17498 * 7 6 3 33 33 H 1.08996 * 109.46810 * 181.18015 * 7 6 3 34 34 H 1.09004 * 109.46951 * 30.15380 * 12 11 10 35 35 H 1.08997 * 109.47409 * 150.15230 * 12 11 10 36 36 H 1.09004 * 109.47034 * 299.99757 * 13 12 11 37 37 H 1.08997 * 109.47242 * 59.99556 * 13 12 11 38 38 H 0.97003 * 119.99756 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47413 * 324.26189 * 23 22 8 40 40 H 1.09000 * 109.47603 * 204.26031 * 23 22 8 41 41 H 1.08000 * 120.00149 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.99861 * 359.72553 * 25 24 23 43 43 H 1.08999 * 109.46877 * 269.99758 * 26 24 23 44 44 H 1.09000 * 109.47305 * 29.99514 * 26 24 23 45 45 H 1.09007 * 109.47111 * 150.00282 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.5204 0.8855 5 6 3.1552 1.4434 0.0122 6 7 3.1360 -0.6814 -1.2053 7 6 2.5899 -2.0420 -1.2989 8 6 4.5213 -0.6985 -1.2378 9 7 5.3234 -0.8743 -0.2142 10 7 6.5468 -0.8322 -0.6059 11 6 6.5973 -0.6346 -1.8928 12 6 7.8446 -0.5306 -2.7322 13 6 8.2980 0.9294 -2.7931 14 6 9.5456 1.0334 -3.6321 15 1 9.9721 0.1468 -4.0776 16 6 10.1418 2.2604 -3.8316 17 7 11.2303 2.3512 -4.5642 18 14 9.4036 3.7939 -3.0617 19 1 9.9932 4.0046 -1.7150 20 1 9.6976 4.9694 -3.9200 21 1 7.9333 3.6268 -2.9376 22 7 5.3089 -0.5361 -2.3401 23 6 4.8659 -0.3096 -3.7180 24 6 4.6016 1.1594 -3.9256 25 6 5.5346 1.9278 -4.4305 26 6 3.2638 1.7444 -3.5523 27 1 -1.0500 -0.0007 0.0003 28 1 2.7917 1.9495 0.9064 29 1 4.2453 1.4440 0.0117 30 1 2.7917 1.9645 -0.8735 31 1 2.8766 -2.6102 -0.4141 32 1 1.5030 -1.9936 -1.3632 33 1 2.9851 -2.5316 -2.1890 34 1 8.6333 -1.1377 -2.2879 35 1 7.6350 -0.8883 -3.7403 36 1 7.5093 1.5366 -3.2375 37 1 8.5075 1.2871 -1.7851 38 1 11.6500 3.2145 -4.7043 39 1 3.9513 -0.8730 -3.9029 40 1 5.6421 -0.6402 -4.4083 41 1 5.3454 2.9807 -4.5789 42 1 6.4949 1.5094 -4.6938 43 1 2.5914 1.6888 -4.4083 44 1 2.8404 1.1814 -2.7205 45 1 3.3922 2.7862 -3.2582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001524088369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:57 Heat of formation + Delta-G solvation = 161.191880 kcal Electronic energy + Delta-G solvation = -25617.534279 eV Core-core repulsion = 22253.153396 eV Total energy + Delta-G solvation = -3364.380883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.77987 -38.46493 -36.75838 -34.26487 -33.58635 -33.02503 -31.78975 -30.74797 -29.07553 -27.50974 -26.78760 -25.91445 -25.16940 -24.05353 -21.67028 -20.83394 -20.08771 -18.65258 -18.17038 -17.18637 -16.86735 -16.48954 -15.92661 -15.15614 -15.08195 -14.66271 -14.22930 -14.15518 -13.68560 -13.45501 -13.38518 -13.12333 -12.84624 -12.68420 -12.49619 -12.04426 -11.95722 -11.79416 -11.70976 -11.58858 -11.36905 -11.13887 -11.10147 -10.92671 -10.56382 -10.42662 -10.34379 -9.98850 -9.88716 -9.79826 -9.33075 -9.09971 -9.01315 -8.58589 -8.37291 -6.11325 -4.10509 1.81682 2.08031 2.31692 2.58741 2.91346 3.14191 3.27753 3.35523 3.38952 3.76238 4.05326 4.39707 4.62479 4.71183 4.76943 4.89415 4.98591 5.10446 5.18693 5.21312 5.24385 5.38232 5.42269 5.42723 5.52894 5.57750 5.65281 5.72743 5.73991 5.86684 5.98344 6.09161 6.15161 6.16625 6.21200 6.29170 6.46964 6.49539 6.68496 6.80198 6.88029 7.17164 7.25582 7.30932 7.37039 7.68050 8.42938 8.92134 9.04643 9.50596 11.01551 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004458 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.832472 B = 6279.404113 C = 6590.757118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.173 4.173 3 C 0.205 3.795 4 H 0.085 0.915 5 C -0.144 4.144 6 N -0.455 5.455 7 C 0.031 3.969 8 C 0.330 3.670 9 N -0.316 5.316 10 N -0.295 5.295 11 C 0.212 3.788 12 C -0.023 4.023 13 C -0.012 4.012 14 C -0.522 4.522 15 H 0.075 0.925 16 C 0.073 3.927 17 N -0.899 5.899 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.264 1.264 22 N -0.459 5.459 23 C 0.152 3.848 24 C -0.168 4.168 25 C -0.147 4.147 26 C -0.121 4.121 27 H 0.219 0.781 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.027 0.973 37 H 0.019 0.981 38 H 0.264 0.736 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.120 0.880 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.084 -4.818 2.957 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C 0.099 3.901 4 H 0.103 0.897 5 C -0.202 4.202 6 N -0.180 5.180 7 C -0.117 4.117 8 C -0.026 4.026 9 N -0.160 5.160 10 N -0.134 5.134 11 C -0.055 4.055 12 C -0.063 4.063 13 C -0.050 4.050 14 C -0.560 4.560 15 H 0.093 0.907 16 C -0.129 4.129 17 N -0.538 5.538 18 Si 0.700 3.300 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 N -0.152 5.152 23 C 0.030 3.970 24 C -0.168 4.168 25 C -0.185 4.185 26 C -0.178 4.178 27 H 0.236 0.764 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.138 0.862 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.655 -4.684 3.891 22.495 hybrid contribution -0.672 0.799 -0.378 1.110 sum -22.327 -3.884 3.513 22.933 Atomic orbital electron populations 1.24863 0.95699 1.00563 0.99769 1.22578 0.93568 1.00452 1.00763 1.18463 0.84201 0.96547 0.90901 0.89702 1.21880 1.02237 0.93239 1.02800 1.58642 1.00391 1.18961 1.40029 1.22474 1.00832 0.86458 1.01897 1.21961 0.89970 1.05957 0.84754 1.74497 0.97065 1.20271 1.24162 1.74050 1.11478 1.19753 1.08128 1.25628 0.86149 1.00806 0.92937 1.20244 0.88106 1.02142 0.95829 1.19726 0.97454 0.90099 0.97763 1.20997 1.08551 0.95424 1.30986 0.90676 1.24934 0.94532 0.98821 0.94590 1.69899 1.19567 1.25165 1.39140 0.86884 0.80476 0.83012 0.79627 1.20171 1.21362 1.18871 1.46395 1.06475 1.53381 1.08915 1.20771 1.01704 0.95067 0.79450 1.21644 0.97598 0.94441 1.03163 1.24247 0.98294 0.99758 0.96167 1.20946 0.94162 1.00578 1.02068 0.76402 0.91258 0.91214 0.91336 0.93834 0.89869 0.91091 0.88750 0.90728 0.95490 0.96280 0.92612 0.88666 0.87961 0.88147 0.86158 0.92003 0.89974 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.17 -1.80 11.17 -37.12 -0.41 -2.22 16 3 C 0.21 2.46 2.30 -70.50 -0.16 2.30 16 4 H 0.09 1.09 7.88 -51.93 -0.41 0.68 16 5 C -0.14 -1.79 8.89 37.16 0.33 -1.46 16 6 N -0.46 -5.63 3.27 -177.98 -0.58 -6.22 16 7 C 0.03 0.32 9.16 60.07 0.55 0.87 16 8 C 0.33 5.11 5.44 -318.88 -1.73 3.38 16 9 N -0.32 -5.81 11.24 30.31 0.34 -5.47 16 10 N -0.29 -5.97 12.18 32.99 0.40 -5.57 16 11 C 0.21 3.92 7.32 -154.01 -1.13 2.80 16 12 C -0.02 -0.45 5.51 -27.88 -0.15 -0.60 16 13 C -0.01 -0.28 4.02 -27.88 -0.11 -0.39 16 14 C -0.52 -13.98 9.66 -34.44 -0.33 -14.31 16 15 H 0.08 2.14 7.99 -52.49 -0.42 1.72 16 16 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 17 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 18 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 22 N -0.46 -7.21 2.79 -115.37 -0.32 -7.53 16 23 C 0.15 1.95 6.22 -5.20 -0.03 1.92 16 24 C -0.17 -2.24 5.63 -101.06 -0.57 -2.81 16 25 C -0.15 -2.18 12.49 29.02 0.36 -1.82 16 26 C -0.12 -1.41 9.79 36.01 0.35 -1.06 16 27 H 0.22 1.03 7.80 -54.09 -0.42 0.60 16 28 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 1.07 6.93 -51.93 -0.36 0.71 16 30 H 0.07 0.83 6.55 -51.93 -0.34 0.49 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.72 7.04 -51.93 -0.37 0.36 16 33 H 0.07 0.69 8.11 -51.93 -0.42 0.27 16 34 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.07 1.28 7.17 -51.93 -0.37 0.90 16 36 H 0.03 0.60 3.85 -51.93 -0.20 0.40 16 37 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 38 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.10 1.24 6.93 -51.93 -0.36 0.88 16 41 H 0.10 1.42 8.04 -52.49 -0.42 1.00 16 42 H 0.12 2.01 6.45 -52.49 -0.34 1.67 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.99 5.24 -51.93 -0.27 0.72 16 45 H 0.06 0.68 8.06 -51.93 -0.42 0.26 16 LS Contribution 368.62 15.07 5.56 5.56 Total: -1.00 -31.64 368.62 -7.87 -39.51 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -6.79 Total: 1.64 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -2.57 Total: -12.49 kcal Atomic # 7 Polarization: -51.43 SS G_CDS: 0.61 Total: -50.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.64 -7.87 -39.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524088369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.698 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds