Wall clock time and date at job start Tue Mar 31 2020 08:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.08991 * 109.47324 * 300.48288 * 3 2 1 5 5 C 1.53002 * 109.46680 * 180.48392 * 3 2 1 6 6 N 1.46902 * 109.47375 * 60.48608 * 3 2 1 7 7 C 1.46907 * 110.99761 * 303.95382 * 6 3 2 8 8 C 1.38577 * 111.00447 * 179.97438 * 6 3 2 9 9 N 1.31220 * 126.46960 * 38.57297 * 8 6 3 10 10 N 1.28523 * 109.86097 * 179.97438 * 9 8 6 11 11 C 1.30296 * 110.05084 * 359.72333 * 10 9 8 12 12 C 1.50705 * 126.34925 * 180.31170 * 11 10 9 13 13 C 1.52995 * 109.47155 * 270.15572 * 12 11 10 14 14 C 1.50703 * 109.47283 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99586 * 0.02562 * 14 13 12 16 16 C 1.37872 * 119.99998 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99867 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00353 * 0.02562 * 16 14 13 19 19 H 1.48507 * 109.47133 * 89.99533 * 18 16 14 20 20 H 1.48491 * 109.47320 * 209.99673 * 18 16 14 21 21 H 1.48500 * 109.46905 * 329.99860 * 18 16 14 22 22 N 1.36451 * 126.47572 * 218.55701 * 8 6 3 23 23 C 1.46496 * 127.13712 * 0.02562 * 22 8 6 24 24 C 1.50699 * 109.47050 * 84.26096 * 23 22 8 25 25 C 1.30994 * 120.00054 * 94.99982 * 24 23 22 26 26 C 1.50706 * 119.99875 * 275.00334 * 24 23 22 27 27 H 4.18731 * 15.03927 * 0.02562 * 4 2 1 28 28 H 1.08995 * 109.47611 * 60.00244 * 5 3 2 29 29 H 1.09002 * 109.47133 * 180.02562 * 5 3 2 30 30 H 1.09002 * 109.47224 * 299.99524 * 5 3 2 31 31 H 1.09000 * 109.46629 * 301.17869 * 7 6 3 32 32 H 1.08992 * 109.47193 * 61.17498 * 7 6 3 33 33 H 1.08996 * 109.46810 * 181.18015 * 7 6 3 34 34 H 1.09004 * 109.46951 * 30.15380 * 12 11 10 35 35 H 1.08997 * 109.47409 * 150.15230 * 12 11 10 36 36 H 1.09004 * 109.47034 * 299.99757 * 13 12 11 37 37 H 1.08997 * 109.47242 * 59.99556 * 13 12 11 38 38 H 0.97003 * 119.99756 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47413 * 324.26189 * 23 22 8 40 40 H 1.09000 * 109.47603 * 204.26031 * 23 22 8 41 41 H 1.08000 * 120.00149 * 180.02562 * 25 24 23 42 42 H 1.08000 * 119.99861 * 359.72553 * 25 24 23 43 43 H 1.08999 * 109.46877 * 269.99758 * 26 24 23 44 44 H 1.09000 * 109.47305 * 29.99514 * 26 24 23 45 45 H 1.09007 * 109.47111 * 150.00282 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0096 -0.5204 0.8855 5 6 3.1552 1.4434 0.0122 6 7 3.1360 -0.6814 -1.2053 7 6 2.5899 -2.0420 -1.2989 8 6 4.5213 -0.6985 -1.2378 9 7 5.3234 -0.8743 -0.2142 10 7 6.5468 -0.8322 -0.6059 11 6 6.5973 -0.6346 -1.8928 12 6 7.8446 -0.5306 -2.7322 13 6 8.2980 0.9294 -2.7931 14 6 9.5456 1.0334 -3.6321 15 1 9.9721 0.1468 -4.0776 16 6 10.1418 2.2604 -3.8316 17 7 11.2303 2.3512 -4.5642 18 14 9.4036 3.7939 -3.0617 19 1 9.9932 4.0046 -1.7150 20 1 9.6976 4.9694 -3.9200 21 1 7.9333 3.6268 -2.9376 22 7 5.3089 -0.5361 -2.3401 23 6 4.8659 -0.3096 -3.7180 24 6 4.6016 1.1594 -3.9256 25 6 5.5346 1.9278 -4.4305 26 6 3.2638 1.7444 -3.5523 27 1 -1.0500 -0.0007 0.0003 28 1 2.7917 1.9495 0.9064 29 1 4.2453 1.4440 0.0117 30 1 2.7917 1.9645 -0.8735 31 1 2.8766 -2.6102 -0.4141 32 1 1.5030 -1.9936 -1.3632 33 1 2.9851 -2.5316 -2.1890 34 1 8.6333 -1.1377 -2.2879 35 1 7.6350 -0.8883 -3.7403 36 1 7.5093 1.5366 -3.2375 37 1 8.5075 1.2871 -1.7851 38 1 11.6500 3.2145 -4.7043 39 1 3.9513 -0.8730 -3.9029 40 1 5.6421 -0.6402 -4.4083 41 1 5.3454 2.9807 -4.5789 42 1 6.4949 1.5094 -4.6938 43 1 2.5914 1.6888 -4.4083 44 1 2.8404 1.1814 -2.7205 45 1 3.3922 2.7862 -3.2582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001524088369.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:57 Heat of formation + Delta-G solvation = 145.107482 kcal Electronic energy + Delta-G solvation = -25618.231751 eV Core-core repulsion = 22253.153396 eV Total energy + Delta-G solvation = -3365.078355 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 302.180 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.10304 -39.45466 -37.91582 -36.00971 -34.63897 -34.32019 -33.50313 -31.61294 -30.58663 -28.53701 -27.97750 -27.39257 -26.34959 -25.04236 -23.43563 -21.99899 -21.59115 -19.78994 -19.02267 -18.93667 -18.13153 -17.66705 -17.13118 -16.43445 -16.08927 -16.03594 -15.76568 -15.36443 -15.03001 -14.89048 -14.60766 -14.52417 -14.07666 -13.78123 -13.54358 -13.38486 -13.11159 -12.96996 -12.90750 -12.77346 -12.67280 -12.62045 -12.34760 -12.22435 -12.03640 -11.80370 -11.64347 -11.48236 -11.37695 -11.20258 -11.05883 -10.77020 -10.28025 -10.13228 -9.65102 -8.29291 -6.31900 0.59180 0.87901 1.32287 1.35074 1.37900 1.44993 1.73598 1.89224 1.95708 2.33789 2.78081 3.07049 3.32048 3.41081 3.60176 3.71693 3.82317 3.95119 4.06180 4.17501 4.18902 4.34139 4.37765 4.51456 4.54711 4.57427 4.66914 4.71470 4.76888 4.79878 4.83488 4.88301 4.96902 4.99262 5.04269 5.09310 5.20780 5.31275 5.44479 5.47012 5.52678 5.59234 5.64259 5.80782 6.15451 6.25981 6.66491 6.74868 7.32298 7.68154 8.86747 Molecular weight = 302.18amu Principal moments of inertia in cm(-1) A = 0.019633 B = 0.004458 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.832472 B = 6279.404113 C = 6590.757118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.219 4.219 3 C 0.209 3.791 4 H 0.069 0.931 5 C -0.139 4.139 6 N -0.448 5.448 7 C 0.031 3.969 8 C 0.353 3.647 9 N -0.345 5.345 10 N -0.327 5.327 11 C 0.201 3.799 12 C -0.013 4.013 13 C -0.004 4.004 14 C -0.520 4.520 15 H 0.047 0.953 16 C 0.020 3.980 17 N -0.944 5.944 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.280 1.280 21 H -0.247 1.247 22 N -0.455 5.455 23 C 0.143 3.857 24 C -0.154 4.154 25 C -0.170 4.170 26 C -0.118 4.118 27 H 0.255 0.745 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.001 0.999 38 H 0.266 0.734 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.197 -4.660 2.939 26.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.220 4.220 3 C 0.103 3.897 4 H 0.087 0.913 5 C -0.196 4.196 6 N -0.174 5.174 7 C -0.116 4.116 8 C -0.004 4.004 9 N -0.189 5.189 10 N -0.167 5.167 11 C -0.067 4.067 12 C -0.053 4.053 13 C -0.042 4.042 14 C -0.558 4.558 15 H 0.065 0.935 16 C -0.178 4.178 17 N -0.584 5.584 18 Si 0.755 3.245 19 H -0.205 1.205 20 H -0.206 1.206 21 H -0.171 1.171 22 N -0.147 5.147 23 C 0.023 3.977 24 C -0.155 4.155 25 C -0.208 4.208 26 C -0.174 4.174 27 H 0.272 0.728 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.792 -4.540 3.871 26.473 hybrid contribution 0.472 0.667 -0.370 0.897 sum -25.319 -3.873 3.501 25.852 Atomic orbital electron populations 1.25698 0.96289 0.97738 0.96969 1.22327 0.93322 1.03034 1.03320 1.18282 0.85794 0.95682 0.89961 0.91314 1.21822 0.99912 0.94177 1.03719 1.58900 0.98061 1.20197 1.40225 1.22572 1.02103 0.85014 1.01908 1.22275 0.91111 1.03089 0.83965 1.74434 0.96833 1.22151 1.25495 1.73962 1.12851 1.20681 1.09169 1.25249 0.86909 1.02014 0.92551 1.19981 0.88560 0.99582 0.97144 1.19572 0.96019 0.92889 0.95737 1.21266 1.09631 0.94375 1.30535 0.93454 1.25708 0.94932 1.02013 0.95172 1.70024 1.21282 1.26059 1.41078 0.85952 0.80595 0.79498 0.78421 1.20490 1.20605 1.17096 1.46461 1.05498 1.52763 1.09937 1.21107 1.03294 0.95332 0.78015 1.21854 0.97971 0.94448 1.01187 1.24163 0.97933 1.00368 0.98345 1.20960 0.93334 1.00217 1.02897 0.72850 0.89949 0.94570 0.90859 0.94625 0.87612 0.90271 0.89533 0.88781 0.94226 0.98028 0.92472 0.85694 0.87345 0.87558 0.88343 0.89702 0.90069 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 19.25 74.32 1.43 -0.39 16 2 C -0.22 -3.90 11.17 31.12 0.35 -3.55 16 3 C 0.21 4.69 2.30 43.11 0.10 4.79 16 4 H 0.07 1.75 7.88 -2.39 -0.02 1.73 16 5 C -0.14 -3.30 8.89 71.98 0.64 -2.66 16 6 N -0.45 -10.17 3.27 -717.02 -2.34 -12.52 16 7 C 0.03 0.55 9.16 127.69 1.17 1.72 16 8 C 0.35 10.56 5.44 260.11 1.42 11.97 16 9 N -0.35 -12.76 11.24 -58.01 -0.65 -13.41 16 10 N -0.33 -13.44 12.18 -49.53 -0.60 -14.05 16 11 C 0.20 7.44 7.32 137.64 1.01 8.44 16 12 C -0.01 -0.50 5.51 29.85 0.16 -0.33 16 13 C 0.00 -0.17 4.02 29.85 0.12 -0.05 16 14 C -0.52 -28.55 9.66 25.60 0.25 -28.30 16 15 H 0.05 2.80 7.99 -2.91 -0.02 2.78 16 16 C 0.02 1.11 5.47 84.65 0.46 1.58 16 17 N -0.94 -57.65 13.96 21.45 0.30 -57.35 16 18 Si 0.93 44.20 27.47 68.60 1.88 46.09 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 22 N -0.45 -13.71 2.79 -518.92 -1.45 -15.16 16 23 C 0.14 3.35 6.22 85.63 0.53 3.89 16 24 C -0.15 -3.78 5.63 -16.48 -0.09 -3.87 16 25 C -0.17 -4.85 12.49 67.79 0.85 -4.01 16 26 C -0.12 -2.39 9.79 71.24 0.70 -1.69 16 27 H 0.26 0.90 7.80 -4.42 -0.03 0.86 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.04 1.09 6.93 -2.39 -0.02 1.08 16 30 H 0.07 1.64 6.55 -2.39 -0.02 1.62 16 31 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 1.45 7.04 -2.39 -0.02 1.43 16 33 H 0.08 1.29 8.11 -2.39 -0.02 1.28 16 34 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 35 H 0.09 3.20 7.17 -2.39 -0.02 3.18 16 36 H 0.04 1.74 3.85 -2.38 -0.01 1.73 16 37 H 0.00 0.07 7.57 -2.39 -0.02 0.05 16 38 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 39 H 0.13 2.20 8.14 -2.39 -0.02 2.19 16 40 H 0.11 2.43 6.93 -2.39 -0.02 2.41 16 41 H 0.11 2.86 8.04 -2.91 -0.02 2.83 16 42 H 0.10 3.25 6.45 -2.91 -0.02 3.23 16 43 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.08 1.69 5.24 -2.39 -0.01 1.68 16 45 H 0.05 1.16 8.06 -2.38 -0.02 1.14 16 Total: -1.00 -70.34 368.62 7.14 -63.20 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.92 Total: 15.66 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: 9.09 Total: -12.47 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -4.75 Total: -112.48 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.09 kcal Total: -70.34 7.14 -63.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001524088369.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 208.307 kcal (2) G-P(sol) polarization free energy of solvation -70.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds