Wall clock time and date at job start Tue Mar 31 2020 09:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47153 * 2 1 4 4 N 1.46896 * 109.46937 * 179.97438 * 3 2 1 5 5 C 1.46905 * 110.99798 * 169.99983 * 4 3 2 6 6 C 1.50699 * 109.46791 * 290.24804 * 5 4 3 7 7 C 1.38285 * 119.92273 * 95.78879 * 6 5 4 8 8 C 1.38107 * 120.07733 * 180.02562 * 7 6 5 9 9 C 1.38917 * 119.91983 * 359.97438 * 8 7 6 10 10 N 1.39673 * 120.07349 * 179.97438 * 9 8 7 11 11 C 1.46508 * 119.99815 * 359.97438 * 10 9 8 12 12 C 1.46499 * 120.00132 * 180.02562 * 10 9 8 13 13 C 1.50694 * 109.47338 * 89.99858 * 12 10 9 14 14 H 1.08006 * 119.99852 * 359.97438 * 13 12 10 15 15 C 1.37875 * 120.00232 * 180.02562 * 13 12 10 16 16 N 1.31517 * 119.99936 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00427 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46994 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.47482 * 119.99524 * 17 15 13 20 20 H 1.48498 * 109.46966 * 240.00029 * 17 15 13 21 21 C 1.38907 * 119.85230 * 0.25421 * 9 8 7 22 22 C 1.38104 * 119.92328 * 359.48964 * 21 9 8 23 23 C 1.46906 * 110.99961 * 293.95042 * 4 3 2 24 24 C 1.53006 * 117.49674 * 239.52198 * 23 4 3 25 25 C 1.52996 * 59.99868 * 252.51110 * 24 23 4 26 26 H 1.09003 * 109.47363 * 300.00091 * 1 2 3 27 27 H 1.09003 * 109.46975 * 60.00014 * 1 2 3 28 28 H 1.09001 * 109.46795 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47260 * 239.99795 * 2 1 3 30 30 H 1.09002 * 109.47304 * 119.99558 * 2 1 3 31 31 H 1.09003 * 109.47061 * 59.99724 * 3 2 1 32 32 H 1.09002 * 109.46655 * 299.99955 * 3 2 1 33 33 H 1.09001 * 109.47022 * 170.24678 * 5 4 3 34 34 H 1.09003 * 109.46941 * 50.25181 * 5 4 3 35 35 H 1.08003 * 119.96560 * 0.03913 * 7 6 5 36 36 H 1.07996 * 120.04034 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.46982 * 270.00262 * 11 10 9 38 38 H 1.08994 * 109.46929 * 30.00254 * 11 10 9 39 39 H 1.08997 * 109.46782 * 150.00245 * 11 10 9 40 40 H 1.09001 * 109.46817 * 210.00012 * 12 10 9 41 41 H 1.09002 * 109.46770 * 329.99527 * 12 10 9 42 42 H 0.97000 * 120.00016 * 180.02562 * 16 15 13 43 43 H 1.08000 * 120.04053 * 179.72893 * 21 9 8 44 44 H 1.08004 * 119.96210 * 180.25642 * 22 21 9 45 45 H 1.08999 * 115.54694 * 25.22814 * 23 4 3 46 46 H 1.09000 * 117.49876 * 0.02562 * 24 23 4 47 47 H 1.09002 * 117.49169 * 145.01951 * 24 23 4 48 48 H 1.08996 * 117.49968 * 252.51139 * 25 24 23 49 49 H 1.09002 * 117.51453 * 107.48201 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0355 2.7931 -0.2375 6 6 3.7571 3.1967 -1.6625 7 6 2.6389 3.9544 -1.9589 8 6 2.3803 4.3256 -3.2637 9 6 3.2454 3.9374 -4.2790 10 7 2.9867 4.3106 -5.5998 11 6 1.8016 5.1119 -5.9159 12 6 3.8997 3.8998 -6.6693 13 6 3.4578 2.5702 -7.2240 14 1 2.5843 2.0799 -6.8200 15 6 4.1690 1.9790 -8.2466 16 7 5.2329 2.5758 -8.7383 17 14 3.6208 0.3312 -8.9347 18 1 2.4047 -0.1258 -8.2154 19 1 3.3162 0.4752 -10.3809 20 1 4.7061 -0.6663 -8.7544 21 6 4.3651 3.1723 -3.9784 22 6 4.6205 2.8090 -2.6707 23 6 4.0349 0.8859 1.2543 24 6 4.9304 1.7874 2.1067 25 6 5.5391 0.6170 1.3317 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 5.1112 2.7999 -0.0615 34 1 3.5520 3.4963 0.4405 35 1 1.9671 4.2565 -1.1690 36 1 1.5067 4.9170 -3.4946 37 1 0.9623 4.4503 -6.1305 38 1 1.5552 5.7472 -5.0652 39 1 2.0057 5.7342 -6.7871 40 1 3.8886 4.6465 -7.4633 41 1 4.9098 3.8092 -6.2698 42 1 5.7330 2.1601 -9.4579 43 1 5.0373 2.8650 -4.7659 44 1 5.4931 2.2176 -2.4357 45 1 3.3725 0.1954 1.7764 46 1 5.1289 2.7935 1.7374 47 1 4.8571 1.6900 3.1899 48 1 5.8664 -0.2503 1.9051 49 1 6.1384 0.8527 0.4523 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000180098346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:06:18 Heat of formation + Delta-G solvation = 45.945504 kcal Electronic energy + Delta-G solvation = -24791.114886 eV Core-core repulsion = 21525.276888 eV Total energy + Delta-G solvation = -3265.837998 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75235 -39.65589 -37.26659 -35.82034 -34.81173 -33.47222 -31.89642 -30.96682 -29.63045 -27.79597 -26.48840 -25.31497 -24.01270 -23.10607 -23.02426 -22.58845 -21.19906 -20.35445 -18.65412 -18.15756 -17.50203 -16.92152 -16.75387 -16.15730 -15.88255 -15.58937 -15.32560 -15.05129 -14.82895 -14.52675 -14.33777 -14.14607 -14.00438 -13.76353 -13.40604 -13.17362 -13.05837 -13.01291 -12.81429 -12.68099 -12.54829 -12.48812 -12.36819 -12.20581 -11.94898 -11.77310 -11.72884 -11.70401 -11.40146 -11.26048 -11.12316 -10.64760 -10.38620 -9.65545 -8.96057 -8.36527 -7.80076 -6.37665 0.70983 0.83223 1.34925 1.36849 1.48985 2.33887 2.63121 2.75946 3.05570 3.09075 3.30855 3.90368 4.02396 4.03723 4.07621 4.14666 4.21450 4.23313 4.34095 4.41384 4.42613 4.51987 4.64307 4.67190 4.71282 4.73157 4.83487 4.84180 4.86734 4.90391 4.96731 4.98878 5.04117 5.10568 5.13956 5.18886 5.23717 5.30653 5.33077 5.37183 5.44085 5.59164 5.66540 5.69745 5.92238 6.07225 6.16567 6.24271 6.31379 6.49956 6.82759 6.93816 7.34215 8.82887 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.003578 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.777621 B = 7822.777593 C = 8102.282450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C 0.058 3.942 4 N -0.519 5.519 5 C 0.113 3.887 6 C -0.153 4.153 7 C -0.061 4.061 8 C -0.215 4.215 9 C 0.213 3.787 10 N -0.632 5.632 11 C 0.100 3.900 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.047 0.953 15 C 0.013 3.987 16 N -0.926 5.926 17 Si 0.960 3.040 18 H -0.272 1.272 19 H -0.273 1.273 20 H -0.277 1.277 21 C -0.216 4.216 22 C -0.055 4.055 23 C 0.014 3.986 24 C -0.210 4.210 25 C -0.178 4.178 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.038 0.962 38 H 0.085 0.915 39 H 0.061 0.939 40 H 0.011 0.989 41 H 0.010 0.990 42 H 0.267 0.733 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.106 0.894 48 H 0.107 0.893 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.282 -0.365 22.247 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.069 4.069 4 N -0.241 5.241 5 C -0.013 4.013 6 C -0.156 4.156 7 C -0.080 4.080 8 C -0.238 4.238 9 C 0.108 3.892 10 N -0.340 5.340 11 C -0.043 4.043 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.065 0.935 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.785 3.215 18 H -0.197 1.197 19 H -0.198 1.198 20 H -0.203 1.203 21 C -0.239 4.239 22 C -0.074 4.074 23 C -0.095 4.095 24 C -0.249 4.249 25 C -0.216 4.216 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.029 0.971 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.112 0.888 44 H 0.134 0.866 45 H 0.144 0.856 46 H 0.115 0.885 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.052 -0.598 21.488 22.332 hybrid contribution 0.022 -0.380 -0.672 0.772 sum -6.031 -0.978 20.816 21.694 Atomic orbital electron populations 1.21711 0.94769 1.02136 1.01941 1.21499 0.96072 0.95988 1.01884 1.22160 0.86318 0.97588 1.00868 1.61809 1.08318 1.21895 1.32094 1.20892 1.00264 0.88556 0.91603 1.19473 0.97360 1.03596 0.95194 1.20885 0.95889 0.95857 0.95325 1.20768 1.02000 1.08641 0.92380 1.18201 0.93598 0.92610 0.84761 1.46954 1.26874 1.56012 1.04143 1.21591 0.86951 0.94341 1.01419 1.18785 0.88519 0.93715 0.84478 1.21796 1.12090 1.05856 1.18179 0.93499 1.25757 0.94814 1.01309 0.96698 1.70039 1.18600 1.40458 1.27510 0.85475 0.78324 0.79417 0.78287 1.19650 1.19783 1.20271 1.20763 0.99965 1.05787 0.97346 1.20714 0.98799 0.96701 0.91191 1.22763 0.93475 1.02014 0.91287 1.23606 1.05679 0.96296 0.99298 1.23082 0.95762 1.00436 1.02301 0.91713 0.93405 0.92044 0.93338 0.91227 0.93772 0.91460 0.90144 0.92912 0.84275 0.84866 0.94335 0.89688 0.91994 0.97144 0.97196 0.92382 0.88847 0.86551 0.85607 0.88455 0.87538 0.87431 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.91 71.98 0.71 -1.78 16 2 C -0.12 -2.31 5.92 30.60 0.18 -2.13 16 3 C 0.06 1.23 4.77 86.31 0.41 1.65 16 4 N -0.52 -11.96 4.67 -875.48 -4.09 -16.04 16 5 C 0.11 2.64 3.76 85.56 0.32 2.96 16 6 C -0.15 -4.55 4.86 -19.84 -0.10 -4.65 16 7 C -0.06 -1.72 8.21 22.25 0.18 -1.54 16 8 C -0.22 -7.15 9.21 22.40 0.21 -6.94 16 9 C 0.21 8.86 6.55 38.21 0.25 9.11 16 10 N -0.63 -28.17 2.99 -726.56 -2.17 -30.34 16 11 C 0.10 3.51 10.23 127.77 1.31 4.82 16 12 C 0.27 14.28 4.95 85.63 0.42 14.70 16 13 C -0.54 -31.06 9.39 25.60 0.24 -30.82 16 14 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.93 -55.09 13.29 21.45 0.28 -54.80 16 17 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 18 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 21 C -0.22 -9.33 9.20 22.40 0.21 -9.13 16 22 C -0.05 -1.96 9.71 22.25 0.22 -1.75 16 23 C 0.01 0.25 5.78 44.92 0.26 0.51 16 24 C -0.21 -3.31 9.51 30.59 0.29 -3.02 16 25 C -0.18 -3.18 10.01 30.59 0.31 -2.87 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.07 1.20 6.45 -2.39 -0.02 1.18 16 31 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 32 H 0.07 1.67 6.05 -2.39 -0.01 1.65 16 33 H 0.08 1.83 5.97 -2.39 -0.01 1.82 16 34 H 0.05 1.07 7.84 -2.39 -0.02 1.05 16 35 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 36 H 0.13 3.80 6.14 -2.91 -0.02 3.78 16 37 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 2.40 6.20 -2.39 -0.01 2.38 16 39 H 0.06 2.12 7.89 -2.39 -0.02 2.10 16 40 H 0.01 0.59 7.89 -2.39 -0.02 0.57 16 41 H 0.01 0.58 6.21 -2.39 -0.01 0.57 16 42 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 43 H 0.09 4.67 6.15 -2.91 -0.02 4.65 16 44 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 45 H 0.13 2.03 6.38 -2.39 -0.02 2.02 16 46 H 0.10 1.61 5.87 -2.39 -0.01 1.59 16 47 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.08 1.74 7.86 -2.39 -0.02 1.72 16 Total: -1.00 -64.38 383.50 2.85 -61.54 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.91 Total: 22.27 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 5.88 Total: -29.65 kcal Atomic # 7 Polarization: -95.22 SS G_CDS: -5.97 Total: -101.19 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.38 2.85 -61.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000180098346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.482 kcal (2) G-P(sol) polarization free energy of solvation -64.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds