Wall clock time and date at job start Tue Mar 31 2020 07:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47347 * 2 1 4 4 C 1.53005 * 109.47070 * 239.99381 * 2 1 3 5 5 C 1.50705 * 109.47052 * 185.00122 * 4 2 1 6 6 C 1.38231 * 119.61393 * 124.73200 * 5 4 2 7 7 C 1.38625 * 119.15617 * 179.71237 * 6 5 4 8 8 C 1.38676 * 118.42226 * 0.54804 * 7 6 5 9 9 C 1.50695 * 120.42027 * 179.70986 * 8 7 6 10 10 N 1.46899 * 109.47218 * 270.02689 * 9 8 7 11 11 C 1.46907 * 111.00191 * 189.99835 * 10 9 8 12 12 C 1.50702 * 109.47066 * 75.57943 * 11 10 9 13 13 H 1.08001 * 119.99872 * 355.84067 * 12 11 10 14 14 C 1.37876 * 120.00006 * 175.83462 * 12 11 10 15 15 N 1.31513 * 120.00096 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99951 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47286 * 60.00272 * 16 14 12 18 18 H 1.48498 * 109.46881 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47178 * 300.00360 * 16 14 12 20 20 C 1.46899 * 111.00156 * 66.04376 * 10 9 8 21 21 C 1.52996 * 109.47359 * 195.24660 * 20 10 9 22 22 C 1.52997 * 117.50483 * 244.21019 * 21 20 10 23 23 C 1.52995 * 117.50295 * 175.54712 * 21 20 10 24 24 C 1.38181 * 119.16094 * 359.73614 * 8 7 6 25 25 N 1.31849 * 119.61800 * 305.00789 * 5 4 2 26 26 H 1.09000 * 109.46873 * 60.00004 * 1 2 3 27 27 H 1.08994 * 109.46819 * 300.00307 * 1 2 3 28 28 H 1.09000 * 109.47225 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.46797 * 119.99956 * 2 1 3 30 30 H 1.08998 * 109.47138 * 60.00458 * 3 2 1 31 31 H 1.09003 * 109.47065 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47131 * 299.99839 * 3 2 1 33 33 H 1.08992 * 109.47478 * 305.00642 * 4 2 1 34 34 H 1.09000 * 109.46716 * 65.00578 * 4 2 1 35 35 H 1.07997 * 120.42185 * 359.97438 * 6 5 4 36 36 H 1.07997 * 120.79096 * 180.26037 * 7 6 5 37 37 H 1.09005 * 109.47221 * 30.02528 * 9 8 7 38 38 H 1.08996 * 109.47381 * 150.02184 * 9 8 7 39 39 H 1.09000 * 109.47177 * 195.58042 * 11 10 9 40 40 H 1.08997 * 109.47035 * 315.58473 * 11 10 9 41 41 H 0.96993 * 120.00172 * 179.97438 * 15 14 12 42 42 H 1.08994 * 109.47015 * 315.25017 * 20 10 9 43 43 H 1.09005 * 109.47427 * 75.25150 * 20 10 9 44 44 H 1.09007 * 115.54999 * 29.87794 * 21 20 10 45 45 H 1.09000 * 117.49849 * 0.02562 * 22 21 20 46 46 H 1.09003 * 117.50331 * 145.01966 * 22 21 20 47 47 H 1.09004 * 117.50209 * 214.97969 * 23 21 20 48 48 H 1.09003 * 117.50008 * 0.02562 * 23 21 20 49 49 H 1.08007 * 119.61637 * 179.97438 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5420 -0.8296 -1.1888 6 6 4.1424 -2.0700 -1.2969 7 6 5.5249 -2.1578 -1.2461 8 6 6.2547 -0.9909 -1.0763 9 6 7.7594 -1.0350 -1.0083 10 7 8.1817 -1.2083 0.3879 11 6 9.6320 -1.0196 0.5267 12 6 9.9566 0.4502 0.4528 13 1 9.1743 1.1664 0.2494 14 6 11.2524 0.8805 0.6450 15 7 12.2051 0.0082 0.8923 16 14 11.6546 2.7023 0.5541 17 1 10.8771 3.4331 1.5869 18 1 13.1065 2.9012 0.7941 19 1 11.3001 3.2210 -0.7915 20 6 7.7699 -2.5208 0.9035 21 6 7.8770 -2.5258 2.4297 22 6 8.8899 -3.4812 3.0638 23 6 7.3912 -3.7747 3.1679 24 6 5.5845 0.2128 -0.9696 25 7 4.2678 0.2594 -1.0281 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 0.8901 30 1 1.6768 1.9563 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6054 -1.7199 -1.2951 34 1 1.7517 -0.1585 -2.1369 35 1 3.5422 -2.9589 -1.4235 36 1 6.0217 -3.1129 -1.3321 37 1 8.1258 -1.8705 -1.6050 38 1 8.1683 -0.1031 -1.3986 39 1 9.9597 -1.4163 1.4876 40 1 10.1455 -1.5460 -0.2779 41 1 13.1167 0.3109 1.0271 42 1 6.7388 -2.7189 0.6109 43 1 8.4193 -3.2932 0.4913 44 1 7.7220 -1.5621 2.9150 45 1 9.4804 -4.1059 2.3937 46 1 9.4010 -3.1463 3.9665 47 1 6.9170 -3.6328 4.1391 48 1 6.9957 -4.5931 2.5663 49 1 6.1455 1.1261 -0.8367 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891937310.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:59 Heat of formation + Delta-G solvation = 46.959106 kcal Electronic energy + Delta-G solvation = -24780.295576 eV Core-core repulsion = 21514.501531 eV Total energy + Delta-G solvation = -3265.794045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.29314 -37.87484 -36.44645 -35.37573 -32.84079 -32.05994 -31.59928 -28.12911 -27.66008 -27.05507 -25.56222 -23.85043 -23.09175 -22.03597 -21.62814 -20.67290 -20.08663 -19.56988 -16.56153 -16.38208 -16.25722 -15.53496 -14.99467 -14.88010 -14.64638 -14.35154 -14.18419 -13.95606 -13.60285 -13.33609 -13.12699 -12.81262 -12.55793 -12.24399 -12.14853 -11.99480 -11.94023 -11.70727 -11.31875 -11.18605 -11.10534 -10.86746 -10.79190 -10.75780 -10.69196 -10.65344 -10.57009 -10.02039 -9.86692 -9.60081 -9.38385 -9.16222 -8.94805 -8.53341 -8.39902 -7.31347 -6.01564 -4.02871 1.34164 1.48904 3.34181 3.38464 3.41441 3.93875 4.21223 4.41035 4.43652 4.68760 4.85432 4.90534 4.97548 5.10141 5.16662 5.22854 5.29424 5.32442 5.33204 5.34877 5.50313 5.54863 5.60710 5.66131 5.68633 5.79717 5.89029 5.91722 5.93249 5.95419 5.98391 6.04107 6.13359 6.18413 6.23653 6.28079 6.30859 6.38275 6.41056 6.46161 6.58095 6.71062 6.78798 7.04511 7.23695 7.33415 7.80783 8.10175 8.16650 8.22384 8.52327 9.04087 9.61179 11.08850 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.012489 B = 0.003894 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2241.510076 B = 7188.103024 C = 8433.317547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.159 4.159 4 C -0.061 4.061 5 C 0.117 3.883 6 C -0.174 4.174 7 C -0.074 4.074 8 C -0.114 4.114 9 C 0.101 3.899 10 N -0.526 5.526 11 C 0.194 3.806 12 C -0.506 4.506 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.289 1.289 19 H -0.277 1.277 20 C 0.082 3.918 21 C -0.127 4.127 22 C -0.177 4.177 23 C -0.190 4.190 24 C 0.120 3.880 25 N -0.476 5.476 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.046 0.954 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.030 0.970 38 H 0.095 0.905 39 H 0.041 0.959 40 H -0.012 1.012 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.160 -5.638 -2.623 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.217 4.217 4 C -0.099 4.099 5 C -0.021 4.021 6 C -0.194 4.194 7 C -0.100 4.100 8 C -0.117 4.117 9 C -0.027 4.027 10 N -0.251 5.251 11 C 0.069 3.931 12 C -0.544 4.544 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.723 3.277 17 H -0.202 1.202 18 H -0.215 1.215 19 H -0.203 1.203 20 C -0.047 4.047 21 C -0.146 4.146 22 C -0.214 4.214 23 C -0.227 4.227 24 C -0.037 4.037 25 N -0.185 5.185 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.048 0.952 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.005 0.995 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.041 0.959 44 H 0.129 0.871 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -18.587 -4.483 -2.240 19.251 hybrid contribution 1.301 -0.617 -0.473 1.515 sum -17.286 -5.100 -2.713 18.226 Atomic orbital electron populations 1.21864 0.95556 1.01286 1.01707 1.20976 0.94806 0.97528 0.97224 1.22165 1.05171 0.94231 1.00087 1.20576 0.89070 1.01072 0.99215 1.21118 0.96142 0.88823 0.96013 1.21827 0.95198 0.98411 1.03945 1.21483 0.93716 0.98382 0.96421 1.21037 0.97860 0.93906 0.98857 1.20913 0.88409 1.02331 0.91083 1.62139 1.19495 1.27285 1.16144 1.19786 0.79393 0.97089 0.96839 1.21121 0.93243 0.92174 1.47882 0.91972 1.24965 0.96355 0.97699 0.95483 1.69942 1.01096 1.33734 1.49074 0.86601 0.77058 0.85383 0.78611 1.20174 1.21456 1.20275 1.21683 0.99228 0.91264 0.92517 1.22221 1.02780 0.94643 0.94945 1.22967 0.91521 1.03774 1.03177 1.22938 0.97690 1.00273 1.01840 1.22745 0.89431 0.97857 0.93697 1.67478 1.07159 1.31199 1.12660 0.92777 0.92756 0.93028 0.91619 0.94146 0.88413 0.93480 0.90861 0.90392 0.85576 0.85529 0.95167 0.88712 0.94062 0.99467 0.92931 0.91663 0.95892 0.87128 0.89258 0.89143 0.89376 0.89586 0.82468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.88 16 2 C -0.09 -0.90 2.91 -90.62 -0.26 -1.16 16 3 C -0.16 -1.86 8.81 37.16 0.33 -1.54 16 4 C -0.06 -0.63 5.14 -27.88 -0.14 -0.77 16 5 C 0.12 1.52 6.18 -82.59 -0.51 1.01 16 6 C -0.17 -2.13 9.71 -39.44 -0.38 -2.51 16 7 C -0.07 -1.00 8.01 -39.28 -0.31 -1.31 16 8 C -0.11 -1.79 4.94 -104.48 -0.52 -2.30 16 9 C 0.10 1.83 4.97 -4.98 -0.02 1.80 16 10 N -0.53 -10.78 4.38 -237.52 -1.04 -11.82 16 11 C 0.19 4.84 4.59 -4.97 -0.02 4.81 16 12 C -0.51 -13.74 8.60 -34.44 -0.30 -14.03 16 13 H 0.06 1.66 7.66 -52.49 -0.40 1.26 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C 0.08 1.44 5.08 -3.83 -0.02 1.43 16 21 C -0.13 -2.20 4.94 -90.63 -0.45 -2.65 16 22 C -0.18 -2.85 9.96 -26.70 -0.27 -3.12 16 23 C -0.19 -2.67 10.25 -26.70 -0.27 -2.94 16 24 C 0.12 1.88 10.86 -17.55 -0.19 1.69 16 25 N -0.48 -7.06 7.02 -9.47 -0.07 -7.12 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 1.36 5.18 -51.93 -0.27 1.09 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.61 7.87 -51.93 -0.41 0.20 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.13 1.20 7.95 -52.49 -0.42 0.78 16 36 H 0.13 1.53 7.77 -52.49 -0.41 1.13 16 37 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 38 H 0.09 1.84 7.27 -51.93 -0.38 1.46 16 39 H 0.04 1.11 6.91 -51.93 -0.36 0.75 16 40 H -0.01 -0.33 8.00 -51.93 -0.42 -0.75 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.07 1.05 5.19 -51.93 -0.27 0.78 16 43 H 0.02 0.41 7.80 -51.93 -0.40 0.01 16 44 H 0.11 2.11 8.14 -51.92 -0.42 1.69 16 45 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 46 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.16 2.45 8.06 -52.48 -0.42 2.02 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -28.89 388.80 -11.41 -40.30 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.78 Total: 2.98 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -3.10 Total: -21.02 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.37 Total: -44.47 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.89 -11.41 -40.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937310.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.256 kcal (2) G-P(sol) polarization free energy of solvation -28.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds