Wall clock time and date at job start Tue Mar 31 2020 08:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47270 * 2 1 4 4 H 1.08995 * 109.46622 * 54.57683 * 3 2 1 5 5 N 1.46899 * 109.46882 * 294.57718 * 3 2 1 6 6 C 1.46904 * 110.99557 * 139.72532 * 5 3 2 7 7 C 1.53001 * 109.47209 * 95.30261 * 6 5 3 8 8 C 1.52999 * 109.46815 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47403 * 299.99778 * 8 7 6 10 10 C 1.50701 * 109.46812 * 300.00247 * 9 8 7 11 11 H 1.08004 * 120.00046 * 119.99872 * 10 9 8 12 12 C 1.37873 * 120.00326 * 299.99754 * 10 9 8 13 13 N 1.31513 * 120.00065 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00293 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47127 * 59.99888 * 14 12 10 16 16 H 1.48499 * 109.47516 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47165 * 299.99910 * 14 12 10 18 18 C 1.52994 * 109.46966 * 59.99803 * 9 8 7 19 19 C 1.52999 * 109.47592 * 300.00361 * 18 9 8 20 20 C 1.50697 * 109.46891 * 174.57651 * 3 2 1 21 21 N 1.31882 * 119.62086 * 80.40724 * 20 3 2 22 22 C 1.31853 * 121.72900 * 179.70602 * 21 20 3 23 23 C 1.38231 * 120.76318 * 0.56201 * 22 21 20 24 24 C 1.38628 * 119.15735 * 359.72411 * 23 22 21 25 25 C 1.38183 * 119.61797 * 260.66793 * 20 3 2 26 26 C 1.50700 * 120.41778 * 0.03049 * 25 20 3 27 27 H 1.09001 * 109.46716 * 306.46910 * 1 2 3 28 28 H 1.08996 * 109.47653 * 66.46750 * 1 2 3 29 29 H 1.09005 * 109.47235 * 186.47588 * 1 2 3 30 30 H 1.09005 * 109.47016 * 240.00618 * 2 1 3 31 31 H 1.08994 * 109.47763 * 120.00720 * 2 1 3 32 32 H 1.00899 * 111.00482 * 15.77302 * 5 3 2 33 33 H 1.08995 * 109.47108 * 335.29743 * 6 5 3 34 34 H 1.08997 * 109.46817 * 299.99650 * 7 6 5 35 35 H 1.08995 * 109.47508 * 59.99727 * 7 6 5 36 36 H 1.09007 * 109.46669 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47548 * 59.99834 * 8 7 6 38 38 H 1.08995 * 109.47488 * 180.02562 * 9 8 7 39 39 H 0.96997 * 120.00615 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47291 * 180.02562 * 18 9 8 41 41 H 1.09002 * 109.46780 * 60.00682 * 18 9 8 42 42 H 1.08995 * 109.46979 * 300.00160 * 19 18 9 43 43 H 1.08998 * 109.47199 * 179.97438 * 19 18 9 44 44 H 1.08000 * 119.61873 * 180.30415 * 22 21 20 45 45 H 1.07994 * 120.41795 * 179.70220 * 23 22 21 46 46 H 1.08003 * 120.78577 * 179.97438 * 24 23 22 47 47 H 1.09007 * 109.47427 * 83.93836 * 26 25 20 48 48 H 1.09002 * 109.47670 * 203.93776 * 26 25 20 49 49 H 1.09004 * 109.47146 * 323.94233 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9835 0.8374 5 7 1.6601 2.0962 -1.2595 6 6 1.2295 3.4809 -1.0249 7 6 2.4108 4.4272 -1.2484 8 6 1.9620 5.8695 -1.0046 9 6 0.8340 6.2237 -1.9757 10 6 1.3285 6.0841 -3.3924 11 1 0.8483 5.3898 -4.0661 12 6 2.3940 6.8426 -3.8286 13 7 2.9792 7.6877 -3.0083 14 14 3.0066 6.6700 -5.5849 15 1 1.9116 7.0142 -6.5271 16 1 4.1528 7.5889 -5.8020 17 1 3.4419 5.2702 -5.8220 18 6 -0.3472 5.2774 -1.7523 19 6 0.1015 3.8351 -1.9961 20 6 3.5410 1.4446 0.1343 21 7 4.2907 1.2188 -0.9270 22 6 5.6074 1.2167 -0.8581 23 6 6.2529 1.4419 0.3434 24 6 5.4979 1.6773 1.4819 25 6 4.1158 1.6775 1.3691 26 6 3.2516 1.9280 2.5780 27 1 -0.3633 0.6109 0.8264 28 1 -0.3634 0.4103 -0.9421 29 1 -0.3634 -1.0211 0.1159 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.9437 1.5708 -1.7379 33 1 0.8721 3.5816 -0.0001 34 1 3.2145 4.1746 -0.5568 35 1 2.7682 4.3266 -2.2731 36 1 2.8038 6.5436 -1.1634 37 1 1.6043 5.9705 0.0201 38 1 0.5146 7.2513 -1.8024 39 1 3.7285 8.2216 -3.3152 40 1 -1.1507 5.5294 -2.4445 41 1 -0.7049 5.3784 -0.7277 42 1 0.4592 3.7341 -3.0207 43 1 -0.7400 3.1609 -1.8365 44 1 6.1883 1.0327 -1.7498 45 1 7.3316 1.4341 0.3943 46 1 5.9749 1.8560 2.4343 47 1 2.9386 0.9750 3.0047 48 1 3.8190 2.4895 3.3203 49 1 2.3721 2.5006 2.2835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173328362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:12 Heat of formation + Delta-G solvation = 11.526632 kcal Electronic energy + Delta-G solvation = -26136.606607 eV Core-core repulsion = 22869.276095 eV Total energy + Delta-G solvation = -3267.330512 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.32561 -38.19918 -36.16350 -33.50787 -32.82356 -31.65208 -31.22463 -29.46985 -28.12570 -27.10227 -25.72336 -24.38404 -22.85983 -21.90043 -21.45227 -20.54993 -20.25560 -18.54278 -16.76061 -16.23427 -15.67149 -15.32923 -14.92099 -14.81439 -14.58461 -14.18492 -13.98175 -13.51746 -13.32528 -13.01819 -12.91523 -12.77644 -12.67095 -12.55317 -12.40400 -11.90910 -11.77079 -11.55408 -11.14841 -11.11135 -10.89756 -10.86900 -10.82216 -10.75995 -10.49560 -10.13261 -9.97391 -9.56591 -9.51629 -9.10840 -9.02253 -8.82766 -8.57447 -8.51921 -8.15645 -7.81973 -5.85655 -3.89130 1.28086 1.49693 3.40769 3.44579 3.48696 3.97045 4.42616 4.49683 4.55259 4.82077 4.88037 4.99136 5.07290 5.11252 5.16070 5.30275 5.45317 5.47230 5.50406 5.59862 5.61442 5.71104 5.75462 5.81390 5.86158 5.91061 6.00120 6.04935 6.11902 6.22948 6.25294 6.34639 6.38432 6.54025 6.65834 6.70253 6.82420 6.89012 6.89888 6.95824 7.12663 7.29820 7.50917 7.69241 7.84726 7.85529 7.90109 8.06490 8.27815 8.37434 8.59850 9.12138 9.73636 11.20387 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.013471 B = 0.005106 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.054575 B = 5482.954711 C = 6355.979482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C 0.134 3.866 4 H 0.069 0.931 5 N -0.665 5.665 6 C 0.097 3.903 7 C -0.076 4.076 8 C -0.109 4.109 9 C 0.045 3.955 10 C -0.496 4.496 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.893 5.893 14 Si 0.883 3.117 15 H -0.279 1.279 16 H -0.290 1.290 17 H -0.277 1.277 18 C -0.103 4.103 19 C -0.111 4.111 20 C 0.153 3.847 21 N -0.440 5.440 22 C 0.091 3.909 23 C -0.181 4.181 24 C -0.081 4.081 25 C -0.142 4.142 26 C -0.111 4.111 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.338 0.662 33 H 0.029 0.971 34 H 0.022 0.978 35 H 0.075 0.925 36 H 0.089 0.911 37 H 0.007 0.993 38 H 0.022 0.978 39 H 0.257 0.743 40 H 0.046 0.954 41 H 0.030 0.970 42 H 0.078 0.922 43 H 0.032 0.968 44 H 0.150 0.850 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.699 -14.977 10.913 18.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C 0.023 3.977 4 H 0.086 0.914 5 N -0.297 5.297 6 C -0.011 4.011 7 C -0.114 4.114 8 C -0.147 4.147 9 C 0.026 3.974 10 C -0.535 4.535 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.533 5.533 14 Si 0.711 3.289 15 H -0.205 1.205 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.142 4.142 19 C -0.149 4.149 20 C 0.013 3.987 21 N -0.148 5.148 22 C -0.066 4.066 23 C -0.201 4.201 24 C -0.107 4.107 25 C -0.144 4.144 26 C -0.168 4.168 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.047 0.953 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.026 0.974 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.097 0.903 43 H 0.051 0.949 44 H 0.167 0.833 45 H 0.146 0.854 46 H 0.146 0.854 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.074 -14.835 9.924 17.881 hybrid contribution 0.275 0.073 0.241 0.373 sum 1.349 -14.762 10.165 17.974 Atomic orbital electron populations 1.21825 0.95450 1.01763 1.02149 1.21756 0.95798 0.95884 1.02902 1.20607 0.89247 0.94700 0.93188 0.91372 1.60365 1.46292 1.02829 1.20188 1.21728 0.95973 0.87166 0.96256 1.21244 0.94435 0.93925 1.01822 1.21547 1.02420 0.95766 0.94982 1.18674 0.90232 0.93536 0.94924 1.21076 1.14547 1.21734 0.96104 0.92815 1.24907 0.96746 0.95375 0.96835 1.69859 1.23297 1.25389 1.34707 0.86795 0.78258 0.77984 0.85816 1.20522 1.21549 1.20214 1.21516 0.99489 0.95168 0.97978 1.21676 0.95331 0.96821 1.01051 1.21115 0.96246 0.93786 0.87531 1.67530 1.05674 1.10626 1.30940 1.22798 0.90888 0.95882 0.97064 1.22072 1.00934 1.02855 0.94205 1.21354 0.93106 0.97459 0.98764 1.20693 0.94771 1.02296 0.96676 1.20781 0.99371 1.01810 0.94856 0.92722 0.92288 0.92423 0.90574 0.91790 0.84156 0.95283 0.95917 0.90671 0.89228 0.97377 0.95999 0.93256 0.93533 0.95087 0.90325 0.94923 0.83258 0.85407 0.85449 0.91254 0.91577 0.90915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.69 37.15 0.36 -1.16 16 2 C -0.12 -1.43 5.37 -26.73 -0.14 -1.57 16 3 C 0.13 1.88 2.14 -68.86 -0.15 1.73 16 4 H 0.07 0.94 4.66 -51.93 -0.24 0.70 16 5 N -0.66 -10.97 5.95 -100.95 -0.60 -11.57 16 6 C 0.10 1.81 2.56 -67.71 -0.17 1.64 16 7 C -0.08 -1.71 5.31 -26.73 -0.14 -1.85 16 8 C -0.11 -2.64 5.23 -26.73 -0.14 -2.78 16 9 C 0.04 1.12 2.59 -91.77 -0.24 0.88 16 10 C -0.50 -13.50 6.61 -34.44 -0.23 -13.73 16 11 H 0.05 1.46 6.71 -52.48 -0.35 1.10 16 12 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 13 N -0.89 -25.95 11.32 55.43 0.63 -25.32 16 14 Si 0.88 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.10 -2.16 5.41 -26.73 -0.14 -2.30 16 19 C -0.11 -2.10 4.87 -26.73 -0.13 -2.24 16 20 C 0.15 2.33 5.49 -82.59 -0.45 1.88 16 21 N -0.44 -7.34 9.97 -9.47 -0.09 -7.43 16 22 C 0.09 1.30 11.18 -17.55 -0.20 1.11 16 23 C -0.18 -2.22 10.11 -39.44 -0.40 -2.62 16 24 C -0.08 -0.99 9.84 -39.28 -0.39 -1.37 16 25 C -0.14 -1.89 5.90 -104.48 -0.62 -2.51 16 26 C -0.11 -1.17 9.45 36.01 0.34 -0.83 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 6.80 -51.93 -0.35 0.25 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.34 5.11 6.13 -39.29 -0.24 4.87 16 33 H 0.03 0.53 7.11 -51.93 -0.37 0.16 16 34 H 0.02 0.50 7.85 -51.93 -0.41 0.10 16 35 H 0.07 1.95 7.21 -51.93 -0.37 1.57 16 36 H 0.09 2.46 6.07 -51.92 -0.32 2.15 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 1.66 6.62 -51.93 -0.34 1.32 16 43 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 45 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 46 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 49 H 0.07 0.82 6.19 -51.93 -0.32 0.49 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -30.21 372.46 -10.78 -40.99 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -8.37 Total: 4.91 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: -2.93 Total: -24.08 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.07 Total: -44.33 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.21 -10.78 -40.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.513 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds