Wall clock time and date at job start Tue Mar 31 2020 08:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47270 * 2 1 4 4 H 1.08995 * 109.46622 * 54.57683 * 3 2 1 5 5 N 1.46899 * 109.46882 * 294.57718 * 3 2 1 6 6 C 1.46904 * 110.99557 * 139.72532 * 5 3 2 7 7 C 1.53001 * 109.47209 * 95.30261 * 6 5 3 8 8 C 1.52999 * 109.46815 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47403 * 299.99778 * 8 7 6 10 10 C 1.50701 * 109.46812 * 300.00247 * 9 8 7 11 11 H 1.08004 * 120.00046 * 119.99872 * 10 9 8 12 12 C 1.37873 * 120.00326 * 299.99754 * 10 9 8 13 13 N 1.31513 * 120.00065 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00293 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47127 * 59.99888 * 14 12 10 16 16 H 1.48499 * 109.47516 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.47165 * 299.99910 * 14 12 10 18 18 C 1.52994 * 109.46966 * 59.99803 * 9 8 7 19 19 C 1.52999 * 109.47592 * 300.00361 * 18 9 8 20 20 C 1.50697 * 109.46891 * 174.57651 * 3 2 1 21 21 N 1.31882 * 119.62086 * 80.40724 * 20 3 2 22 22 C 1.31853 * 121.72900 * 179.70602 * 21 20 3 23 23 C 1.38231 * 120.76318 * 0.56201 * 22 21 20 24 24 C 1.38628 * 119.15735 * 359.72411 * 23 22 21 25 25 C 1.38183 * 119.61797 * 260.66793 * 20 3 2 26 26 C 1.50700 * 120.41778 * 0.03049 * 25 20 3 27 27 H 1.09001 * 109.46716 * 306.46910 * 1 2 3 28 28 H 1.08996 * 109.47653 * 66.46750 * 1 2 3 29 29 H 1.09005 * 109.47235 * 186.47588 * 1 2 3 30 30 H 1.09005 * 109.47016 * 240.00618 * 2 1 3 31 31 H 1.08994 * 109.47763 * 120.00720 * 2 1 3 32 32 H 1.00899 * 111.00482 * 15.77302 * 5 3 2 33 33 H 1.08995 * 109.47108 * 335.29743 * 6 5 3 34 34 H 1.08997 * 109.46817 * 299.99650 * 7 6 5 35 35 H 1.08995 * 109.47508 * 59.99727 * 7 6 5 36 36 H 1.09007 * 109.46669 * 179.97438 * 8 7 6 37 37 H 1.09002 * 109.47548 * 59.99834 * 8 7 6 38 38 H 1.08995 * 109.47488 * 180.02562 * 9 8 7 39 39 H 0.96997 * 120.00615 * 180.02562 * 13 12 10 40 40 H 1.09001 * 109.47291 * 180.02562 * 18 9 8 41 41 H 1.09002 * 109.46780 * 60.00682 * 18 9 8 42 42 H 1.08995 * 109.46979 * 300.00160 * 19 18 9 43 43 H 1.08998 * 109.47199 * 179.97438 * 19 18 9 44 44 H 1.08000 * 119.61873 * 180.30415 * 22 21 20 45 45 H 1.07994 * 120.41795 * 179.70220 * 23 22 21 46 46 H 1.08003 * 120.78577 * 179.97438 * 24 23 22 47 47 H 1.09007 * 109.47427 * 83.93836 * 26 25 20 48 48 H 1.09002 * 109.47670 * 203.93776 * 26 25 20 49 49 H 1.09004 * 109.47146 * 323.94233 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9835 0.8374 5 7 1.6601 2.0962 -1.2595 6 6 1.2295 3.4809 -1.0249 7 6 2.4108 4.4272 -1.2484 8 6 1.9620 5.8695 -1.0046 9 6 0.8340 6.2237 -1.9757 10 6 1.3285 6.0841 -3.3924 11 1 0.8483 5.3898 -4.0661 12 6 2.3940 6.8426 -3.8286 13 7 2.9792 7.6877 -3.0083 14 14 3.0066 6.6700 -5.5849 15 1 1.9116 7.0142 -6.5271 16 1 4.1528 7.5889 -5.8020 17 1 3.4419 5.2702 -5.8220 18 6 -0.3472 5.2774 -1.7523 19 6 0.1015 3.8351 -1.9961 20 6 3.5410 1.4446 0.1343 21 7 4.2907 1.2188 -0.9270 22 6 5.6074 1.2167 -0.8581 23 6 6.2529 1.4419 0.3434 24 6 5.4979 1.6773 1.4819 25 6 4.1158 1.6775 1.3691 26 6 3.2516 1.9280 2.5780 27 1 -0.3633 0.6109 0.8264 28 1 -0.3634 0.4103 -0.9421 29 1 -0.3634 -1.0211 0.1159 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 0.9437 1.5708 -1.7379 33 1 0.8721 3.5816 -0.0001 34 1 3.2145 4.1746 -0.5568 35 1 2.7682 4.3266 -2.2731 36 1 2.8038 6.5436 -1.1634 37 1 1.6043 5.9705 0.0201 38 1 0.5146 7.2513 -1.8024 39 1 3.7285 8.2216 -3.3152 40 1 -1.1507 5.5294 -2.4445 41 1 -0.7049 5.3784 -0.7277 42 1 0.4592 3.7341 -3.0207 43 1 -0.7400 3.1609 -1.8365 44 1 6.1883 1.0327 -1.7498 45 1 7.3316 1.4341 0.3943 46 1 5.9749 1.8560 2.4343 47 1 2.9386 0.9750 3.0047 48 1 3.8190 2.4895 3.3203 49 1 2.3721 2.5006 2.2835 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328362.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:11 Heat of formation + Delta-G solvation = -5.050038 kcal Electronic energy + Delta-G solvation = -26137.325425 eV Core-core repulsion = 22869.276095 eV Total energy + Delta-G solvation = -3268.049331 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36220 -39.75452 -37.49162 -34.71183 -34.36899 -32.84612 -32.58885 -31.26398 -29.53221 -28.16073 -27.05295 -26.20084 -23.80893 -23.22580 -22.79665 -22.16318 -21.40146 -20.39292 -17.87203 -17.64879 -17.24637 -16.79325 -16.46943 -15.92509 -15.88165 -15.59451 -15.13907 -14.86212 -14.72052 -14.53091 -14.32497 -13.94438 -13.76720 -13.51769 -13.43544 -13.20802 -13.06391 -12.90576 -12.83438 -12.72039 -12.61510 -12.51232 -12.12895 -11.98929 -11.96448 -11.81370 -11.69044 -11.42579 -10.94373 -10.70907 -10.51891 -10.47578 -10.27811 -10.10170 -9.57695 -9.12650 -8.01940 -6.10509 0.27328 0.51327 1.38956 1.41572 1.47131 2.46085 2.93368 3.24505 3.26997 3.51331 3.87617 3.98053 4.00992 4.11874 4.15216 4.21645 4.24501 4.27475 4.38814 4.50931 4.60384 4.64339 4.69827 4.76952 4.80760 4.83119 4.89151 4.89995 4.94530 4.98136 5.00834 5.06167 5.10495 5.18780 5.22303 5.23634 5.31091 5.40196 5.41344 5.47127 5.55901 5.66425 5.75143 5.77817 5.93194 5.99535 6.22416 6.36629 6.47613 6.70488 6.98728 7.33205 7.54686 9.02802 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.013471 B = 0.005106 C = 0.004404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.054575 B = 5482.954711 C = 6355.979482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.134 3.866 4 H 0.076 0.924 5 N -0.676 5.676 6 C 0.111 3.889 7 C -0.057 4.057 8 C -0.103 4.103 9 C 0.039 3.961 10 C -0.500 4.500 11 H 0.051 0.949 12 C 0.013 3.987 13 N -0.920 5.920 14 Si 0.938 3.062 15 H -0.270 1.270 16 H -0.288 1.288 17 H -0.279 1.279 18 C -0.098 4.098 19 C -0.104 4.104 20 C 0.126 3.874 21 N -0.479 5.479 22 C 0.065 3.935 23 C -0.178 4.178 24 C -0.087 4.087 25 C -0.151 4.151 26 C -0.109 4.109 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.347 0.653 33 H 0.044 0.956 34 H 0.015 0.985 35 H 0.033 0.967 36 H 0.051 0.949 37 H 0.024 0.976 38 H -0.011 1.011 39 H 0.255 0.745 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.159 0.841 45 H 0.156 0.844 46 H 0.158 0.842 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -16.736 12.391 20.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C 0.024 3.976 4 H 0.093 0.907 5 N -0.309 5.309 6 C 0.002 3.998 7 C -0.096 4.096 8 C -0.141 4.141 9 C 0.021 3.979 10 C -0.538 4.538 11 H 0.070 0.930 12 C -0.185 4.185 13 N -0.561 5.561 14 Si 0.764 3.236 15 H -0.195 1.195 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.013 4.013 21 N -0.187 5.187 22 C -0.092 4.092 23 C -0.197 4.197 24 C -0.113 4.113 25 C -0.153 4.153 26 C -0.166 4.166 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.062 0.938 34 H 0.033 0.967 35 H 0.051 0.949 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.007 0.993 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.176 0.824 45 H 0.174 0.826 46 H 0.175 0.825 47 H 0.108 0.892 48 H 0.098 0.902 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.313 -16.608 11.395 20.144 hybrid contribution 0.571 0.624 -0.182 0.865 sum 0.884 -15.985 11.213 19.545 Atomic orbital electron populations 1.21806 0.93963 1.02924 1.02112 1.21673 0.96938 0.94044 1.02748 1.20706 0.88943 0.96010 0.91956 0.90650 1.60163 1.46633 1.02026 1.22106 1.21440 0.93834 0.87671 0.96867 1.20982 0.95897 0.93894 0.98825 1.21391 1.00853 0.96209 0.95672 1.18676 0.92161 0.92990 0.94091 1.21359 1.14210 1.20996 0.97233 0.93037 1.25595 0.97257 0.95466 1.00174 1.70004 1.23713 1.26276 1.36133 0.85923 0.77947 0.77594 0.82092 1.19477 1.21380 1.20438 1.21420 0.97583 0.95219 0.99405 1.21584 0.96658 0.96329 0.99577 1.21394 0.96773 0.94957 0.88178 1.67448 1.06917 1.12008 1.32304 1.23121 0.90674 0.96886 0.98565 1.22390 1.02458 1.01388 0.93489 1.21791 0.92930 0.96582 0.99989 1.21064 0.95816 1.01446 0.96979 1.20831 0.98755 1.02989 0.94006 0.92062 0.92794 0.90858 0.92059 0.90578 0.83176 0.93779 0.96667 0.94852 0.93023 0.95720 0.99269 0.93576 0.93241 0.92906 0.92895 0.91028 0.82365 0.82589 0.82466 0.89204 0.90184 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.69 71.98 0.70 -1.84 16 2 C -0.12 -2.42 5.37 30.59 0.16 -2.26 16 3 C 0.13 3.58 2.14 44.17 0.09 3.67 16 4 H 0.08 1.90 4.66 -2.39 -0.01 1.89 16 5 N -0.68 -21.64 5.95 -473.30 -2.82 -24.46 16 6 C 0.11 3.99 2.56 44.92 0.12 4.11 16 7 C -0.06 -2.62 5.31 30.59 0.16 -2.46 16 8 C -0.10 -5.08 5.23 30.59 0.16 -4.92 16 9 C 0.04 2.00 2.59 -11.54 -0.03 1.97 16 10 C -0.50 -27.76 6.61 25.60 0.17 -27.59 16 11 H 0.05 2.83 6.71 -2.91 -0.02 2.81 16 12 C 0.01 0.72 5.30 84.65 0.45 1.17 16 13 N -0.92 -55.32 11.32 21.45 0.24 -55.07 16 14 Si 0.94 45.92 29.54 68.60 2.03 47.95 16 15 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 16 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 17 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 18 C -0.10 -3.96 5.41 30.59 0.17 -3.80 16 19 C -0.10 -3.75 4.87 30.60 0.15 -3.60 16 20 C 0.13 3.76 5.49 42.54 0.23 4.00 16 21 N -0.48 -16.09 9.97 -183.89 -1.83 -17.92 16 22 C 0.06 1.85 11.18 84.69 0.95 2.80 16 23 C -0.18 -4.12 10.11 22.36 0.23 -3.90 16 24 C -0.09 -1.95 9.84 22.47 0.22 -1.73 16 25 C -0.15 -3.77 5.90 -19.77 -0.12 -3.89 16 26 C -0.11 -2.00 9.45 71.24 0.67 -1.33 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.96 6.80 -2.39 -0.02 0.94 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.35 9.97 6.13 -89.69 -0.55 9.42 16 33 H 0.04 1.48 7.11 -2.39 -0.02 1.47 16 34 H 0.01 0.68 7.85 -2.39 -0.02 0.66 16 35 H 0.03 1.77 7.21 -2.39 -0.02 1.76 16 36 H 0.05 2.95 6.07 -2.38 -0.01 2.93 16 37 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.05 2.20 6.62 -2.39 -0.02 2.19 16 43 H 0.07 2.07 8.13 -2.39 -0.02 2.05 16 44 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 45 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 47 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.08 1.24 8.06 -2.39 -0.02 1.22 16 49 H 0.06 1.31 6.19 -2.38 -0.01 1.29 16 Total: -1.00 -67.87 372.46 2.47 -65.40 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.37 Total: 23.69 kcal Atomic # 6 Polarization: -44.07 SS G_CDS: 4.48 Total: -39.59 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -4.41 Total: -97.45 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -67.87 2.47 -65.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328362.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.352 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds