Wall clock time and date at job start Tue Mar 31 2020 07:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 110.99700 * 2 1 4 4 C 1.46900 * 111.00120 * 123.95168 * 2 1 3 5 5 H 1.08992 * 109.47286 * 187.28994 * 4 2 1 6 6 C 1.53001 * 109.47470 * 307.29273 * 4 2 1 7 7 C 1.52993 * 109.47123 * 180.02562 * 6 4 2 8 8 C 1.53005 * 109.46918 * 299.99475 * 7 6 4 9 9 C 1.52995 * 109.47045 * 60.00501 * 8 7 6 10 10 C 1.53002 * 109.46974 * 299.99680 * 9 8 7 11 11 H 1.08992 * 109.47320 * 300.00019 * 10 9 8 12 12 N 1.46501 * 109.46998 * 179.97438 * 10 9 8 13 13 C 1.39673 * 119.99759 * 85.00407 * 12 10 9 14 14 C 1.38919 * 120.07768 * 359.72086 * 13 12 10 15 15 C 1.38101 * 119.92586 * 179.77263 * 14 13 12 16 16 C 1.38276 * 120.07649 * 0.50443 * 15 14 13 17 17 C 1.50704 * 119.92697 * 179.77011 * 16 15 14 18 18 C 1.50703 * 109.46939 * 269.97926 * 17 16 15 19 19 H 1.08002 * 119.99951 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99943 * 180.02562 * 18 17 16 21 21 N 1.31511 * 120.00076 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47638 * 59.99782 * 22 20 18 24 24 H 1.48509 * 109.47229 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47172 * 299.99065 * 22 20 18 26 26 C 1.38289 * 120.15219 * 359.74589 * 16 15 14 27 27 C 1.38102 * 120.07376 * 0.02562 * 26 16 15 28 28 H 1.09005 * 109.46887 * 296.04725 * 1 2 3 29 29 H 1.08996 * 109.47223 * 56.04360 * 1 2 3 30 30 H 1.09002 * 109.47216 * 176.05060 * 1 2 3 31 31 H 1.09006 * 109.47065 * 178.17219 * 3 2 1 32 32 H 1.08994 * 109.47453 * 298.17384 * 3 2 1 33 33 H 1.09000 * 109.47554 * 58.17550 * 3 2 1 34 34 H 1.09002 * 109.47026 * 59.99552 * 6 4 2 35 35 H 1.08999 * 109.46823 * 300.00123 * 6 4 2 36 36 H 1.09003 * 109.47352 * 180.02562 * 7 6 4 37 37 H 1.08992 * 109.47496 * 59.99805 * 7 6 4 38 38 H 1.08994 * 109.47519 * 299.99943 * 8 7 6 39 39 H 1.09008 * 109.46926 * 180.02562 * 8 7 6 40 40 H 1.08995 * 109.47486 * 179.97438 * 9 8 7 41 41 H 1.09004 * 109.47349 * 59.99431 * 9 8 7 42 42 H 0.96996 * 120.00336 * 264.99839 * 12 10 9 43 43 H 1.08001 * 120.03075 * 0.02562 * 14 13 12 44 44 H 1.08001 * 119.95991 * 180.25318 * 15 14 13 45 45 H 1.09001 * 109.47084 * 29.97722 * 17 16 15 46 46 H 1.09001 * 109.47162 * 149.97911 * 17 16 15 47 47 H 0.97000 * 120.00704 * 180.02562 * 21 20 18 48 48 H 1.07995 * 119.96530 * 180.02562 * 26 16 15 49 49 H 1.07994 * 120.03924 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 1 3.0773 -0.6432 1.1888 6 6 1.3624 -0.2549 2.4333 7 6 1.9112 -1.0522 3.6181 8 6 1.5745 -2.5336 3.4357 9 6 2.2076 -3.0447 2.1401 10 6 1.6588 -2.2473 0.9552 11 1 0.5771 -2.3704 0.9042 12 7 2.2655 -2.7363 -0.2854 13 6 1.7157 -3.8381 -0.9446 14 6 0.5972 -4.4751 -0.4222 15 6 0.0534 -5.5614 -1.0790 16 6 0.6272 -6.0217 -2.2499 17 6 0.0341 -7.2106 -2.9611 18 6 0.6744 -8.4742 -2.4471 19 1 1.4351 -8.4216 -1.6822 20 6 0.2899 -9.6974 -2.9540 21 7 -0.6360 -9.7614 -3.8857 22 14 1.0830 -11.2638 -2.3164 23 1 0.8347 -11.3860 -0.8574 24 1 0.4987 -12.4354 -3.0173 25 1 2.5459 -11.2155 -2.5673 26 6 1.7438 -5.3932 -2.7700 27 6 2.2899 -4.3035 -2.1209 28 1 -0.3633 0.4513 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0846 1.3426 0.0328 32 1 1.6726 1.8846 -0.9058 33 1 1.6197 1.9049 0.8731 34 1 0.2805 -0.3776 2.3822 35 1 1.6025 0.8003 2.5635 36 1 1.4599 -0.6885 4.5413 37 1 2.9930 -0.9291 3.6691 38 1 0.4928 -2.6568 3.3848 39 1 1.9652 -3.1016 4.2801 40 1 1.9682 -4.1000 2.0103 41 1 3.2895 -2.9215 2.1910 42 1 3.0489 -2.2948 -0.6491 43 1 0.1510 -4.1186 0.4945 44 1 -0.8186 -6.0545 -0.6755 45 1 -1.0396 -7.2461 -2.7762 46 1 0.2156 -7.1210 -4.0322 47 1 -0.9069 -10.6220 -4.2422 48 1 2.1892 -5.7549 -3.6849 49 1 3.1617 -3.8128 -2.5278 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168601607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:42 Heat of formation + Delta-G solvation = 14.817380 kcal Electronic energy + Delta-G solvation = -24980.153179 eV Core-core repulsion = 21712.965365 eV Total energy + Delta-G solvation = -3267.187815 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 302.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.19451 -38.44083 -36.05713 -34.84395 -32.88074 -30.80267 -30.11350 -29.91733 -28.57267 -27.86238 -25.86637 -24.55749 -23.11125 -22.45507 -21.56438 -21.19045 -19.86886 -19.61003 -16.80627 -16.43576 -16.16136 -15.82590 -15.23928 -14.78815 -14.76218 -14.49495 -14.11269 -13.97392 -13.89542 -13.38222 -13.12739 -12.93160 -12.60214 -12.59907 -12.41821 -12.31685 -12.02579 -11.96192 -11.81968 -11.38699 -11.32830 -11.20364 -11.12430 -10.93335 -10.83237 -10.55301 -10.47182 -10.36751 -9.96774 -9.64340 -9.32973 -8.89171 -8.47242 -8.31625 -8.10826 -6.58835 -5.91278 -3.96025 2.24904 2.51429 3.38258 3.41796 3.45566 3.59976 3.79199 4.38008 4.49707 4.55074 4.70833 4.78620 4.79116 4.94681 5.00134 5.08123 5.11331 5.16635 5.25474 5.30548 5.33851 5.40628 5.49608 5.55125 5.60456 5.67418 5.69246 5.77002 5.78351 5.81362 5.84627 5.90950 6.09514 6.16735 6.18531 6.30622 6.45227 6.60068 6.79331 6.81528 6.84234 7.00524 7.41404 7.42634 7.58652 7.71508 8.01989 8.04090 8.08122 8.25480 8.48411 9.09784 9.67010 11.16549 Molecular weight = 302.21amu Principal moments of inertia in cm(-1) A = 0.023034 B = 0.003022 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.291057 B = 9263.709065 C = 9891.505444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.532 5.532 3 C 0.023 3.977 4 C 0.078 3.922 5 H 0.083 0.917 6 C -0.150 4.150 7 C -0.115 4.115 8 C -0.119 4.119 9 C -0.137 4.137 10 C 0.171 3.829 11 H 0.075 0.925 12 N -0.738 5.738 13 C 0.192 3.808 14 C -0.200 4.200 15 C -0.080 4.080 16 C -0.089 4.089 17 C 0.054 3.946 18 C -0.507 4.507 19 H 0.055 0.945 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 C -0.079 4.079 27 C -0.195 4.195 28 H 0.029 0.971 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.394 0.606 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.023 0.977 46 H 0.024 0.976 47 H 0.261 0.739 48 H 0.114 0.886 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 22.719 13.177 26.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.254 5.254 3 C -0.125 4.125 4 C -0.031 4.031 5 H 0.101 0.899 6 C -0.190 4.190 7 C -0.153 4.153 8 C -0.157 4.157 9 C -0.177 4.177 10 C 0.064 3.936 11 H 0.093 0.907 12 N -0.368 5.368 13 C 0.092 3.908 14 C -0.222 4.222 15 C -0.099 4.099 16 C -0.090 4.090 17 C 0.017 3.983 18 C -0.545 4.545 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.098 4.098 27 C -0.217 4.217 28 H 0.047 0.953 29 H 0.084 0.916 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.228 0.772 43 H 0.124 0.876 44 H 0.131 0.869 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.070 0.930 48 H 0.132 0.868 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.846 22.400 12.745 26.224 hybrid contribution 0.443 -0.341 0.950 1.103 sum 5.289 22.059 13.695 26.498 Atomic orbital electron populations 1.22465 0.87413 1.02792 1.00246 1.62142 1.08204 1.13219 1.41789 1.22397 1.00367 0.89153 1.00601 1.22017 0.99611 0.93436 0.88073 0.89934 1.22192 1.01436 0.99751 0.95586 1.21486 1.00957 0.95387 0.97491 1.21530 1.01016 0.95456 0.97714 1.22090 1.00650 1.00922 0.94001 1.20697 0.98028 0.90531 0.84388 0.90666 1.44232 1.34018 1.32822 1.25739 1.17576 0.93199 0.88061 0.91954 1.20487 0.98996 1.00500 1.02215 1.20809 0.99289 0.94933 0.94875 1.20402 0.95595 0.97383 0.95640 1.18222 0.95826 0.89175 0.95043 1.21118 1.21453 0.90473 1.21500 0.92640 1.25016 0.95239 0.99064 0.95151 1.69951 1.30436 1.25195 1.28070 0.86643 0.79631 0.82648 0.79004 1.20266 1.21348 1.20248 1.20806 0.95527 0.94198 0.99228 1.20436 1.02901 1.01187 0.97218 0.95294 0.91569 0.90893 0.91620 0.91408 0.95712 0.91187 0.91849 0.92017 0.91961 0.91886 0.91720 0.90820 0.91860 0.77238 0.87620 0.86934 0.95825 0.95802 0.92960 0.86822 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.76 60.07 0.53 0.70 16 2 N -0.53 -4.97 4.79 -243.17 -1.17 -6.13 16 3 C 0.02 0.17 9.30 60.07 0.56 0.73 16 4 C 0.08 0.68 1.70 -67.71 -0.12 0.57 16 5 H 0.08 0.72 7.96 -51.93 -0.41 0.31 16 6 C -0.15 -1.12 4.43 -26.73 -0.12 -1.24 16 7 C -0.12 -0.82 5.92 -26.73 -0.16 -0.98 16 8 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 9 C -0.14 -1.40 5.43 -26.73 -0.15 -1.55 16 10 C 0.17 1.82 1.43 -67.93 -0.10 1.72 16 11 H 0.08 0.90 4.95 -51.93 -0.26 0.64 16 12 N -0.74 -9.44 5.08 -52.16 -0.27 -9.71 16 13 C 0.19 3.16 6.64 -83.78 -0.56 2.60 16 14 C -0.20 -3.48 8.84 -39.38 -0.35 -3.83 16 15 C -0.08 -1.64 9.69 -39.62 -0.38 -2.03 16 16 C -0.09 -2.01 5.07 -104.59 -0.53 -2.54 16 17 C 0.05 1.45 5.10 -29.03 -0.15 1.30 16 18 C -0.51 -14.67 9.09 -34.44 -0.31 -14.98 16 19 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 22 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 C -0.08 -1.62 9.69 -39.61 -0.38 -2.01 16 27 C -0.20 -3.44 9.90 -39.38 -0.39 -3.83 16 28 H 0.03 0.23 6.20 -51.93 -0.32 -0.09 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.78 6.52 -51.93 -0.34 0.44 16 31 H 0.06 0.46 8.00 -51.93 -0.42 0.04 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.02 0.17 6.92 -51.93 -0.36 -0.19 16 34 H 0.07 0.56 6.32 -51.93 -0.33 0.23 16 35 H 0.06 0.45 6.86 -51.93 -0.36 0.09 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 40 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.39 4.71 8.61 -40.82 -0.35 4.35 16 43 H 0.11 1.62 6.10 -52.49 -0.32 1.30 16 44 H 0.11 2.25 8.06 -52.49 -0.42 1.83 16 45 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 46 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 47 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 48 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 49 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -30.49 375.89 -11.38 -41.86 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -8.47 Total: 2.70 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -2.86 Total: -24.99 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.69 Total: -42.30 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.49 -11.38 -41.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168601607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.682 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds