Wall clock time and date at job start Tue Mar 31 2020 08:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46999 * 2 1 4 4 O 1.42900 * 109.46873 * 119.99782 * 2 1 3 5 5 C 1.36058 * 116.99872 * 156.79305 * 4 2 1 6 6 C 1.38636 * 119.98520 * 356.80259 * 5 4 2 7 7 C 1.38148 * 120.03768 * 180.02562 * 6 5 4 8 8 C 1.38864 * 120.02211 * 359.97438 * 7 6 5 9 9 N 1.39929 * 120.00908 * 179.97438 * 8 7 6 10 10 S 1.65603 * 119.99685 * 134.02675 * 9 8 7 11 11 O 1.42098 * 106.40260 * 184.53771 * 10 9 8 12 12 O 1.42106 * 106.40055 * 51.62479 * 10 9 8 13 13 C 1.76197 * 107.22122 * 298.08312 * 10 9 8 14 14 H 1.08008 * 119.99488 * 11.55565 * 13 10 9 15 15 C 1.37875 * 120.00218 * 191.27875 * 13 10 9 16 16 N 1.31509 * 119.99931 * 0.27876 * 15 13 10 17 17 Si 1.86796 * 120.00028 * 180.27167 * 15 13 10 18 18 H 1.48506 * 109.46861 * 90.00141 * 17 15 13 19 19 H 1.48500 * 109.47533 * 210.00084 * 17 15 13 20 20 H 1.48501 * 109.47447 * 330.00499 * 17 15 13 21 21 C 1.38840 * 119.97428 * 0.28217 * 8 7 6 22 22 C 1.38289 * 119.95885 * 359.48563 * 21 8 7 23 23 F 1.35102 * 120.00932 * 180.23520 * 22 21 8 24 24 H 1.08998 * 109.47553 * 299.99920 * 1 2 3 25 25 H 1.09004 * 109.47192 * 60.00402 * 1 2 3 26 26 H 1.09001 * 109.46961 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47065 * 239.99881 * 2 1 3 28 28 H 1.08996 * 109.46761 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46820 * 299.99826 * 3 2 1 30 30 H 1.08998 * 109.46902 * 59.99682 * 3 2 1 31 31 H 1.07999 * 119.97976 * 0.02562 * 6 5 4 32 32 H 1.08000 * 119.98811 * 179.97438 * 7 6 5 33 33 H 0.96999 * 120.00370 * 314.03115 * 9 8 7 34 34 H 0.97000 * 120.00558 * 179.97438 * 16 15 13 35 35 H 1.08002 * 120.01714 * 179.71959 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2627 -1.1928 1.1107 6 6 3.9932 -1.1138 -0.0649 7 6 5.2687 -1.6410 -0.1233 8 6 5.8205 -2.2503 0.9959 9 7 7.1124 -2.7848 0.9364 10 16 8.1915 -2.4800 2.1550 11 8 9.4243 -3.0618 1.7541 12 8 7.5320 -2.8155 3.3682 13 6 8.4533 -0.7380 2.1963 14 1 7.8087 -0.0816 1.6305 15 6 9.4775 -0.2126 2.9552 16 7 10.2624 -1.0120 3.6440 17 14 9.7503 1.6346 3.0049 18 1 8.9590 2.2221 4.1158 19 1 11.1922 1.9165 3.2213 20 1 9.3166 2.2340 1.7173 21 6 5.0876 -2.3346 2.1721 22 6 3.8126 -1.8022 2.2309 23 9 3.1003 -1.8795 3.3763 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.5648 -0.6397 -0.9356 32 1 5.8369 -1.5794 -1.0396 33 1 7.3758 -3.3338 0.1813 34 1 10.9832 -0.6425 4.1777 35 1 5.5143 -2.8124 3.0416 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192985607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:06 Heat of formation + Delta-G solvation = -151.496194 kcal Electronic energy + Delta-G solvation = -22909.599317 eV Core-core repulsion = 19141.965305 eV Total energy + Delta-G solvation = -3767.634012 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.077 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -48.43811 -40.10469 -38.06745 -35.38947 -34.20594 -34.11130 -33.17376 -32.82943 -30.41029 -27.98317 -27.34676 -26.20456 -23.58507 -22.19366 -20.94710 -19.18877 -18.46627 -17.76437 -17.43607 -16.52969 -16.12178 -15.72052 -15.32480 -14.99928 -14.95707 -14.80661 -14.29400 -14.07229 -13.69775 -13.29240 -13.06044 -12.83355 -12.55531 -12.35446 -12.29053 -12.06062 -11.88549 -11.48538 -11.33736 -11.24956 -11.12487 -10.77928 -10.64159 -10.50214 -10.44911 -10.19116 -9.72912 -9.30242 -8.91558 -8.63785 -7.58439 -6.75873 -5.39838 1.35725 1.42756 2.13592 3.04663 3.10220 3.11782 3.17304 3.76724 3.99676 4.30648 4.53498 4.56494 4.63895 4.70408 4.81984 4.99042 5.20590 5.31096 5.34699 5.42758 5.52560 5.55237 5.58953 5.74756 5.88668 5.99159 6.04736 6.15231 6.28491 6.29924 6.41710 6.85592 6.93644 7.25567 7.43547 7.70281 7.90859 8.82093 10.17488 Molecular weight = 303.08amu Principal moments of inertia in cm(-1) A = 0.018074 B = 0.004785 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.850536 B = 5850.569216 C = 6481.027273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.075 3.925 3 C -0.182 4.182 4 O -0.306 6.306 5 C 0.073 3.927 6 C -0.169 4.169 7 C -0.113 4.113 8 C 0.172 3.828 9 N -1.072 6.072 10 S 2.701 3.299 11 O -0.988 6.988 12 O -1.002 7.002 13 C -1.013 5.013 14 H 0.104 0.896 15 C 0.133 3.867 16 N -0.841 5.841 17 Si 0.921 3.079 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.262 1.262 21 C -0.147 4.147 22 C 0.093 3.907 23 F -0.131 7.131 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.414 0.586 34 H 0.292 0.708 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.885 2.857 -9.861 18.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.019 3.981 3 C -0.239 4.239 4 O -0.220 6.220 5 C 0.027 3.973 6 C -0.189 4.189 7 C -0.135 4.135 8 C 0.074 3.926 9 N -0.817 5.817 10 S 2.803 3.197 11 O -0.978 6.978 12 O -0.991 6.991 13 C -1.148 5.148 14 H 0.122 0.878 15 C -0.085 4.085 16 N -0.470 5.470 17 Si 0.745 3.255 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.186 1.186 21 C -0.168 4.168 22 C 0.072 3.928 23 F -0.110 7.110 24 H 0.086 0.914 25 H 0.094 0.906 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.156 0.844 32 H 0.153 0.847 33 H 0.248 0.752 34 H 0.102 0.898 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -14.493 2.187 -8.833 17.113 hybrid contribution 0.249 1.428 -0.555 1.552 sum -14.245 3.615 -9.388 17.439 Atomic orbital electron populations 1.21834 0.92539 1.03117 1.02945 1.22438 0.95313 0.92656 0.87709 1.22388 1.02613 0.95929 1.02999 1.86192 1.27233 1.69382 1.39216 1.18842 0.86101 0.98559 0.93802 1.20893 0.95668 1.05462 0.96841 1.21015 0.95255 0.98096 0.99120 1.16992 0.85569 0.96234 0.93794 1.54081 1.21391 1.63390 1.42812 1.01013 0.70500 0.77036 0.71179 1.93397 1.41993 1.80454 1.81970 1.93331 1.75584 1.86330 1.43897 1.30390 1.25560 1.17500 1.41308 0.87765 1.24740 0.91906 1.01320 0.90557 1.69910 1.15841 1.37322 1.23908 0.86141 0.78133 0.81469 0.79749 1.19042 1.19883 1.18606 1.21830 0.91754 1.01902 1.01355 1.16656 0.90783 1.04161 0.81192 1.91485 1.77543 1.94656 1.47322 0.91449 0.90630 0.91666 0.90787 0.91494 0.91144 0.91391 0.84391 0.84703 0.75208 0.89770 0.80576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.56 37.16 0.36 -0.80 16 2 C 0.07 0.75 2.87 -26.73 -0.08 0.67 16 3 C -0.18 -1.68 9.26 37.16 0.34 -1.33 16 4 O -0.31 -4.36 9.67 -19.93 -0.19 -4.55 16 5 C 0.07 1.14 6.55 -39.20 -0.26 0.89 16 6 C -0.17 -2.27 8.34 -39.47 -0.33 -2.60 16 7 C -0.11 -1.66 9.96 -39.38 -0.39 -2.05 16 8 C 0.17 3.13 6.14 -83.71 -0.51 2.62 16 9 N -1.07 -20.73 5.77 32.44 0.19 -20.54 16 10 S 2.70 69.37 5.06 -107.50 -0.54 68.82 16 11 O -0.99 -28.03 17.58 -57.17 -1.00 -29.03 16 12 O -1.00 -27.75 15.14 -57.17 -0.87 -28.62 16 13 C -1.01 -27.38 9.62 30.60 0.29 -27.09 16 14 H 0.10 2.62 7.81 -52.48 -0.41 2.21 16 15 C 0.13 3.66 5.45 -17.82 -0.10 3.56 16 16 N -0.84 -24.24 12.84 55.43 0.71 -23.53 16 17 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 20 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 21 C -0.15 -2.87 9.20 -39.34 -0.36 -3.23 16 22 C 0.09 1.68 7.30 -39.33 -0.29 1.39 16 23 F -0.13 -2.47 17.11 2.25 0.04 -2.43 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.64 5.99 -51.93 -0.31 0.33 16 28 H 0.07 0.69 7.32 -51.93 -0.38 0.31 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.14 1.39 5.67 -52.49 -0.30 1.09 16 32 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 33 H 0.41 6.53 8.96 -34.47 -0.31 6.23 16 34 H 0.29 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.18 3.80 5.70 -52.49 -0.30 3.50 16 LS Contribution 316.82 15.07 4.77 4.77 Total: -1.00 -34.09 316.82 -6.92 -41.01 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.68 Total: 6.68 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: -1.32 Total: -27.96 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.90 Total: -44.07 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -2.06 Total: -62.20 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 69.37 SS G_CDS: -0.54 Total: 68.82 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -34.09 -6.92 -41.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192985607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.489 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds