Wall clock time and date at job start Tue Mar 31 2020 08:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.21282 * 119.99807 * 359.97438 * 16 15 14 18 18 N 1.34768 * 119.99934 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00166 * 179.97438 * 18 16 15 20 20 C 1.52991 * 109.47307 * 180.02562 * 19 18 16 21 21 F 1.39900 * 109.47683 * 60.00052 * 20 19 18 22 22 F 1.39904 * 109.47093 * 180.02562 * 20 19 18 23 23 F 1.39908 * 109.47248 * 299.99961 * 20 19 18 24 24 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 25 25 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 26 26 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 27 27 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 28 28 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 29 29 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 30 30 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 31 31 H 0.97004 * 120.00079 * 0.02562 * 18 16 15 32 32 H 1.09004 * 109.47060 * 300.00868 * 19 18 16 33 33 H 1.09005 * 109.46669 * 60.00018 * 19 18 16 34 34 H 1.08006 * 120.03219 * 180.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6189 -7.1950 -1.8918 18 7 0.6604 -9.0027 -1.0343 19 6 0.4306 -9.5674 -2.3663 20 6 -0.2663 -10.9228 -2.2323 21 9 -1.4921 -10.7545 -1.5794 22 9 -0.4853 -11.4624 -3.5044 23 9 0.5417 -11.7914 -1.4907 24 6 1.4365 -4.7345 0.2253 25 1 -0.4849 0.8401 -0.0004 26 1 3.9527 -2.4857 -0.0140 27 1 5.2811 -4.5471 0.1902 28 1 4.1533 -6.7247 0.4045 29 1 2.1300 -7.9004 1.0433 30 1 0.5456 -7.0924 0.9734 31 1 0.3769 -9.4904 -0.2452 32 1 -0.1993 -8.8909 -2.9441 33 1 1.3856 -9.6982 -2.8752 34 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089689727.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:31 Heat of formation + Delta-G solvation = -195.314844 kcal Electronic energy + Delta-G solvation = -23550.094189 eV Core-core repulsion = 19226.719671 eV Total energy + Delta-G solvation = -4323.374518 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.087 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.57127 -48.08155 -48.04928 -39.99429 -38.81442 -36.55010 -35.20285 -32.45502 -32.08099 -29.92650 -29.09147 -26.90768 -25.22736 -23.68481 -21.74211 -21.39805 -20.47566 -19.04071 -18.81776 -18.50755 -17.58238 -16.93305 -16.67009 -15.79536 -15.73931 -15.09036 -14.90855 -14.85867 -14.48525 -14.47097 -14.37450 -14.20601 -14.19006 -13.84024 -13.68034 -13.42877 -13.25393 -12.62122 -12.44328 -12.29228 -11.85284 -11.54543 -11.25703 -10.83402 -10.78335 -10.61956 -10.44779 -10.00995 -9.58171 -9.32507 -8.81066 -8.07045 -7.20531 -6.41775 -4.00932 1.98028 2.20314 2.40125 2.54648 2.72103 3.15165 3.16234 3.18824 3.25829 3.57375 3.81679 3.99021 4.48934 4.75320 4.77475 4.92465 5.09301 5.11667 5.21753 5.47119 5.63840 5.74686 5.84913 5.93781 6.18518 6.34793 6.65749 6.92420 7.08051 7.08786 7.26257 7.38161 7.45751 7.83666 8.02971 8.03842 9.03855 9.74423 10.76397 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.028027 B = 0.002654 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.799379 B =10549.404610 C =11109.136053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.392 4.392 8 H 0.091 0.909 9 O -0.179 6.179 10 C 0.154 3.846 11 C -0.229 4.229 12 C -0.075 4.075 13 C -0.196 4.196 14 C -0.037 4.037 15 C -0.090 4.090 16 C 0.521 3.479 17 O -0.509 6.509 18 N -0.739 5.739 19 C 0.078 3.922 20 C 0.449 3.551 21 F -0.178 7.178 22 F -0.174 7.174 23 F -0.179 7.179 24 C -0.174 4.174 25 H 0.270 0.730 26 H 0.126 0.874 27 H 0.108 0.892 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.406 0.594 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.121 -20.673 -0.639 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.108 0.892 9 O -0.083 6.083 10 C 0.101 3.899 11 C -0.248 4.248 12 C -0.093 4.093 13 C -0.215 4.215 14 C -0.037 4.037 15 C -0.130 4.130 16 C 0.308 3.692 17 O -0.381 6.381 18 N -0.397 5.397 19 C -0.047 4.047 20 C 0.394 3.606 21 F -0.159 7.159 22 F -0.156 7.156 23 F -0.161 7.161 24 C -0.194 4.194 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.242 0.758 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.932 -20.003 -1.400 20.073 hybrid contribution 0.221 0.263 0.284 0.445 sum 1.153 -19.740 -1.116 19.805 Atomic orbital electron populations 1.70033 1.05943 1.27698 1.46268 1.25275 0.95835 0.98780 0.96611 0.85789 0.78692 0.79826 0.79162 1.19527 1.20304 1.19521 1.21271 0.91757 0.80856 1.52915 0.89163 1.83975 1.34234 1.11372 1.78688 1.19274 0.90251 0.87974 0.92408 1.21193 0.93845 0.99029 1.10775 1.20681 0.98410 0.92315 0.97901 1.20348 0.93252 0.96941 1.10973 1.18628 0.93250 0.91617 1.00237 1.20570 1.03010 0.95998 0.93408 1.20880 0.76364 0.79340 0.92580 1.90797 1.48476 1.58937 1.39907 1.45799 1.64359 1.22417 1.07095 1.22414 1.03482 0.89826 0.89023 1.20597 0.77676 0.88225 0.74113 1.93234 1.45641 1.95568 1.81492 1.93228 1.94908 1.87647 1.39802 1.93226 1.72904 1.72671 1.77284 1.19948 0.99085 0.89987 1.10344 0.92026 0.85595 0.87438 0.87882 0.87963 0.87808 0.75836 0.86767 0.86864 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.59 13.67 55.48 0.76 -24.83 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -11.10 9.49 30.89 0.29 -10.81 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.18 -5.20 9.76 0.05 0.00 -5.20 16 10 C 0.15 3.81 6.65 -39.11 -0.26 3.55 16 11 C -0.23 -5.10 9.17 -39.39 -0.36 -5.47 16 12 C -0.07 -1.41 10.04 -39.61 -0.40 -1.81 16 13 C -0.20 -3.43 9.70 -39.54 -0.38 -3.81 16 14 C -0.04 -0.65 4.37 -104.65 -0.46 -1.10 16 15 C -0.09 -1.09 5.83 -29.03 -0.17 -1.26 16 16 C 0.52 6.77 7.82 -10.99 -0.09 6.68 16 17 O -0.51 -9.08 16.03 5.56 0.09 -9.00 16 18 N -0.74 -6.60 5.42 -60.30 -0.33 -6.93 16 19 C 0.08 0.63 5.64 -4.05 -0.02 0.61 16 20 C 0.45 3.37 3.11 37.15 0.12 3.49 16 21 F -0.18 -1.48 17.18 2.25 0.04 -1.44 16 22 F -0.17 -1.44 17.32 2.25 0.04 -1.40 16 23 F -0.18 -1.41 17.18 2.25 0.04 -1.37 16 24 C -0.17 -3.73 9.65 -39.40 -0.38 -4.11 16 25 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 27 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 28 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.10 1.05 8.08 -51.93 -0.42 0.63 16 31 H 0.41 2.55 8.36 -40.82 -0.34 2.21 16 32 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.11 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -34.05 318.52 -4.79 -38.83 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.00 Total: 3.89 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.21 Total: -13.04 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.43 Total: -31.76 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.09 Total: -14.19 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.12 Total: -4.21 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -34.05 -4.79 -38.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089689727.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.480 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds