Wall clock time and date at job start Tue Mar 31 2020 08:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00487 * 3 2 1 5 5 H 1.48502 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46646 * 120.00284 * 3 2 1 7 7 C 1.39962 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99662 * 185.43478 * 7 2 1 9 9 C 1.41044 * 120.00436 * 5.43482 * 7 2 1 10 10 C 1.40748 * 120.30181 * 34.38569 * 9 7 2 11 11 C 1.36457 * 119.94142 * 180.02562 * 10 9 7 12 12 C 1.38882 * 120.58983 * 359.74544 * 11 10 9 13 13 C 1.38203 * 120.61316 * 0.51461 * 12 11 10 14 14 C 1.38678 * 120.03726 * 359.49019 * 13 12 11 15 15 N 1.39003 * 120.29153 * 180.23244 * 14 13 12 16 16 C 1.34778 * 119.99956 * 25.72695 * 15 14 13 17 17 O 1.21565 * 119.99949 * 356.26512 * 16 15 14 18 18 C 1.47800 * 120.00229 * 176.27192 * 16 15 14 19 19 C 1.39579 * 120.12224 * 359.72112 * 18 16 15 20 20 C 1.38201 * 119.87247 * 179.72122 * 19 18 16 21 21 F 1.35099 * 119.93531 * 180.27341 * 20 19 18 22 22 C 1.38533 * 120.12238 * 0.55465 * 20 19 18 23 23 C 1.38528 * 120.25269 * 359.72456 * 22 20 19 24 24 F 1.35103 * 119.94002 * 179.97438 * 23 22 20 25 25 C 1.38198 * 120.12301 * 359.97438 * 23 22 20 26 26 H 0.97007 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.07991 * 120.02673 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.70287 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.69219 * 180.27879 * 12 11 10 30 30 H 1.08005 * 119.97990 * 179.76238 * 13 12 11 31 31 H 0.96998 * 120.00219 * 205.72758 * 15 14 13 32 32 H 1.07996 * 120.06517 * 359.97438 * 19 18 16 33 33 H 1.08000 * 119.87063 * 179.73890 * 22 20 19 34 34 H 1.08004 * 120.06065 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0082 -1.2121 -0.0005 8 1 3.0846 -1.2143 0.0880 9 6 1.3078 -2.4308 -0.1168 10 6 0.1449 -2.5091 -0.9058 11 6 -0.5273 -3.6918 -1.0126 12 6 -0.0718 -4.8258 -0.3527 13 6 1.0643 -4.7744 0.4325 14 6 1.7674 -3.5858 0.5592 15 7 2.9135 -3.5294 1.3437 16 6 3.6399 -4.6445 1.5568 17 8 3.2566 -5.7122 1.1200 18 6 4.9023 -4.5693 2.3218 19 6 5.3477 -3.3437 2.8197 20 6 6.5259 -3.2802 3.5392 21 9 6.9553 -2.0956 4.0264 22 6 7.2703 -4.4281 3.7568 23 6 6.8361 -5.6462 3.2600 24 9 7.5674 -6.7616 3.4755 25 6 5.6563 -5.7225 2.5444 26 1 -0.4851 0.8401 0.0004 27 1 -0.2155 -1.6337 -1.4254 28 1 -1.4195 -3.7474 -1.6188 29 1 -0.6126 -5.7554 -0.4511 30 1 1.4073 -5.6616 0.9442 31 1 3.1906 -2.6874 1.7377 32 1 4.7706 -2.4474 2.6465 33 1 8.1926 -4.3731 4.3160 34 1 5.3185 -6.6728 2.1579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336326039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:28 Heat of formation + Delta-G solvation = -74.675955 kcal Electronic energy + Delta-G solvation = -23280.843391 eV Core-core repulsion = 19393.469393 eV Total energy + Delta-G solvation = -3887.373998 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.081 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.21894 -49.19184 -40.24128 -38.44024 -37.07156 -34.08592 -33.69686 -31.52741 -30.54997 -29.68329 -28.42961 -25.44697 -24.43199 -23.00339 -21.77205 -20.93870 -19.82212 -18.49640 -17.40841 -17.36565 -16.75818 -16.39464 -16.21318 -16.11019 -15.52173 -15.50527 -15.23053 -14.62377 -14.57901 -14.34652 -13.91059 -13.15801 -12.89354 -12.75231 -12.43905 -12.21100 -12.07621 -11.96338 -11.78542 -11.40236 -11.24771 -11.05856 -10.57914 -10.31967 -9.84107 -9.50142 -9.34122 -9.32022 -9.01884 -8.91654 -7.41255 -7.03872 -6.73389 -4.51324 0.38636 0.72863 2.45062 2.77341 2.99681 3.00758 3.01926 3.13358 3.36381 3.69837 3.76094 3.84525 4.09824 4.43223 4.54320 4.58656 4.82422 4.89129 5.33642 5.50864 5.54038 5.65205 5.74568 5.91213 6.27349 6.43624 6.45377 6.52796 6.78581 6.96433 7.06357 7.17138 7.56172 7.61128 7.84366 8.00620 8.01245 8.28902 8.44856 8.65317 8.74088 8.86879 10.14485 Molecular weight = 303.08amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.004796 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.727697 B = 5836.942167 C = 7758.131548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.077 3.923 3 Si 0.910 3.090 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.477 4.477 8 H 0.074 0.926 9 C 0.103 3.897 10 C -0.137 4.137 11 C -0.117 4.117 12 C -0.216 4.216 13 C -0.101 4.101 14 C 0.015 3.985 15 N -0.619 5.619 16 C 0.536 3.464 17 O -0.527 6.527 18 C -0.060 4.060 19 C -0.135 4.135 20 C 0.127 3.873 21 F -0.128 7.128 22 C -0.176 4.176 23 C 0.123 3.877 24 F -0.129 7.129 25 C -0.109 4.109 26 H 0.281 0.719 27 H 0.121 0.879 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.126 0.874 31 H 0.405 0.595 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.387 -3.260 6.343 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.140 4.140 3 Si 0.734 3.266 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.507 4.507 8 H 0.093 0.907 9 C 0.100 3.900 10 C -0.157 4.157 11 C -0.135 4.135 12 C -0.236 4.236 13 C -0.121 4.121 14 C -0.078 4.078 15 N -0.259 5.259 16 C 0.323 3.677 17 O -0.406 6.406 18 C -0.064 4.064 19 C -0.155 4.155 20 C 0.108 3.892 21 F -0.106 7.106 22 C -0.196 4.196 23 C 0.104 3.896 24 F -0.107 7.107 25 C -0.129 4.129 26 H 0.092 0.908 27 H 0.139 0.861 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.143 0.857 31 H 0.243 0.757 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 9.970 -3.808 6.070 12.278 hybrid contribution 0.705 1.376 0.366 1.589 sum 10.675 -2.432 6.436 12.700 Atomic orbital electron populations 1.69760 1.07305 1.29260 1.36464 1.25821 0.94861 1.00973 0.92338 0.86342 0.79978 0.80364 0.79897 1.18924 1.20276 1.19014 1.19246 0.94566 0.90133 1.46765 0.90745 1.17373 0.93014 0.90816 0.88812 1.20923 0.97659 0.96498 1.00649 1.20543 0.98896 0.93856 1.00247 1.20403 0.99786 0.97419 1.05984 1.21034 0.94446 0.96963 0.99619 1.17854 0.91229 0.97077 1.01686 1.42793 1.24343 1.10871 1.47940 1.17939 0.83382 0.84928 0.81496 1.90697 1.70141 1.28593 1.51184 1.19755 0.95934 0.92429 0.98247 1.21510 0.96094 0.99269 0.98604 1.17065 0.93911 0.81025 0.97248 1.91560 1.89423 1.43903 1.85715 1.21145 1.02805 0.90816 1.04867 1.17076 0.90984 0.82346 0.99209 1.91548 1.76179 1.50005 1.92997 1.21296 0.92849 1.00552 0.98201 0.90776 0.86116 0.89221 0.88977 0.85651 0.75743 0.83147 0.83137 0.82541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.57 10.96 55.55 0.61 -18.96 16 2 C 0.08 1.80 5.31 -17.33 -0.09 1.71 16 3 Si 0.91 17.51 29.56 -169.99 -5.03 12.49 16 4 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 6 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 7 C -0.48 -11.45 8.19 -37.87 -0.31 -11.76 16 8 H 0.07 1.67 7.46 -52.49 -0.39 1.28 16 9 C 0.10 2.58 5.52 -106.64 -0.59 1.99 16 10 C -0.14 -3.41 8.57 -39.28 -0.34 -3.75 16 11 C -0.12 -2.67 9.96 -39.99 -0.40 -3.07 16 12 C -0.22 -4.87 10.04 -39.36 -0.39 -5.27 16 13 C -0.10 -2.35 8.78 -39.43 -0.35 -2.69 16 14 C 0.02 0.36 6.48 -83.21 -0.54 -0.18 16 15 N -0.62 -12.08 5.05 -10.34 -0.05 -12.13 16 16 C 0.54 9.75 7.65 -12.35 -0.09 9.66 16 17 O -0.53 -11.00 13.27 5.31 0.07 -10.93 16 18 C -0.06 -0.85 5.87 -104.99 -0.62 -1.47 16 19 C -0.14 -1.68 9.52 -39.09 -0.37 -2.05 16 20 C 0.13 1.44 7.29 -39.49 -0.29 1.15 16 21 F -0.13 -1.49 17.26 2.25 0.04 -1.45 16 22 C -0.18 -1.80 10.00 -39.37 -0.39 -2.20 16 23 C 0.12 1.39 7.29 -39.49 -0.29 1.10 16 24 F -0.13 -1.45 17.26 2.25 0.04 -1.41 16 25 C -0.11 -1.39 9.57 -39.10 -0.37 -1.77 16 26 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.12 3.08 6.47 -52.49 -0.34 2.74 16 28 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 30 H 0.13 2.88 5.53 -52.48 -0.29 2.59 16 31 H 0.41 7.08 5.78 -40.82 -0.24 6.84 16 32 H 0.15 1.75 6.41 -52.49 -0.34 1.41 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.16 1.99 7.65 -52.48 -0.40 1.59 16 LS Contribution 306.49 15.07 4.62 4.62 Total: -1.00 -27.00 306.49 -7.53 -34.53 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.40 Total: 11.84 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -5.43 Total: -18.60 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: 0.56 Total: -31.09 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.07 Total: -10.93 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.00 -7.53 -34.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336326039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.146 kcal (2) G-P(sol) polarization free energy of solvation -26.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds