Wall clock time and date at job start Tue Mar 31 2020 08:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30845 * 1 3 3 Si 1.86803 * 120.00006 * 2 1 4 4 H 1.48498 * 109.47325 * 240.00487 * 3 2 1 5 5 H 1.48502 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46646 * 120.00284 * 3 2 1 7 7 C 1.39962 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99662 * 185.43478 * 7 2 1 9 9 C 1.41044 * 120.00436 * 5.43482 * 7 2 1 10 10 C 1.40748 * 120.30181 * 34.38569 * 9 7 2 11 11 C 1.36457 * 119.94142 * 180.02562 * 10 9 7 12 12 C 1.38882 * 120.58983 * 359.74544 * 11 10 9 13 13 C 1.38203 * 120.61316 * 0.51461 * 12 11 10 14 14 C 1.38678 * 120.03726 * 359.49019 * 13 12 11 15 15 N 1.39003 * 120.29153 * 180.23244 * 14 13 12 16 16 C 1.34778 * 119.99956 * 25.72695 * 15 14 13 17 17 O 1.21565 * 119.99949 * 356.26512 * 16 15 14 18 18 C 1.47800 * 120.00229 * 176.27192 * 16 15 14 19 19 C 1.39579 * 120.12224 * 359.72112 * 18 16 15 20 20 C 1.38201 * 119.87247 * 179.72122 * 19 18 16 21 21 F 1.35099 * 119.93531 * 180.27341 * 20 19 18 22 22 C 1.38533 * 120.12238 * 0.55465 * 20 19 18 23 23 C 1.38528 * 120.25269 * 359.72456 * 22 20 19 24 24 F 1.35103 * 119.94002 * 179.97438 * 23 22 20 25 25 C 1.38198 * 120.12301 * 359.97438 * 23 22 20 26 26 H 0.97007 * 120.00505 * 359.97438 * 1 2 3 27 27 H 1.07991 * 120.02673 * 359.97438 * 10 9 7 28 28 H 1.08004 * 119.70287 * 179.97438 * 11 10 9 29 29 H 1.07995 * 119.69219 * 180.27879 * 12 11 10 30 30 H 1.08005 * 119.97990 * 179.76238 * 13 12 11 31 31 H 0.96998 * 120.00219 * 205.72758 * 15 14 13 32 32 H 1.07996 * 120.06517 * 359.97438 * 19 18 16 33 33 H 1.08000 * 119.87063 * 179.73890 * 22 20 19 34 34 H 1.08004 * 120.06065 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.0961 1.6965 -1.2125 5 1 1.2775 2.7465 0.0006 6 1 3.0963 1.6963 1.2125 7 6 2.0082 -1.2121 -0.0005 8 1 3.0846 -1.2143 0.0880 9 6 1.3078 -2.4308 -0.1168 10 6 0.1449 -2.5091 -0.9058 11 6 -0.5273 -3.6918 -1.0126 12 6 -0.0718 -4.8258 -0.3527 13 6 1.0643 -4.7744 0.4325 14 6 1.7674 -3.5858 0.5592 15 7 2.9135 -3.5294 1.3437 16 6 3.6399 -4.6445 1.5568 17 8 3.2566 -5.7122 1.1200 18 6 4.9023 -4.5693 2.3218 19 6 5.3477 -3.3437 2.8197 20 6 6.5259 -3.2802 3.5392 21 9 6.9553 -2.0956 4.0264 22 6 7.2703 -4.4281 3.7568 23 6 6.8361 -5.6462 3.2600 24 9 7.5674 -6.7616 3.4755 25 6 5.6563 -5.7225 2.5444 26 1 -0.4851 0.8401 0.0004 27 1 -0.2155 -1.6337 -1.4254 28 1 -1.4195 -3.7474 -1.6188 29 1 -0.6126 -5.7554 -0.4511 30 1 1.4073 -5.6616 0.9442 31 1 3.1906 -2.6874 1.7377 32 1 4.7706 -2.4474 2.6465 33 1 8.1926 -4.3731 4.3160 34 1 5.3185 -6.6728 2.1579 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336326039.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:28 Heat of formation + Delta-G solvation = -87.341115 kcal Electronic energy + Delta-G solvation = -23281.392594 eV Core-core repulsion = 19393.469393 eV Total energy + Delta-G solvation = -3887.923201 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.081 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.12039 -50.09988 -41.66158 -39.73787 -38.64109 -35.69065 -35.47501 -32.64020 -31.60759 -31.42750 -30.08237 -27.18276 -25.69344 -23.99862 -23.38063 -22.55282 -21.33065 -19.78587 -19.11054 -18.48461 -18.03227 -17.49588 -17.35769 -17.14643 -16.89526 -16.59114 -16.40524 -16.15394 -15.99919 -15.57430 -15.30423 -14.80881 -14.44176 -14.18124 -13.88541 -13.64432 -13.24664 -13.09075 -13.04796 -12.91661 -12.85140 -12.70694 -12.16031 -12.06310 -11.58806 -11.16730 -11.06084 -10.58402 -10.30679 -9.96933 -9.26479 -8.80543 -8.48521 -6.35020 -0.64330 -0.22283 0.85102 1.06926 1.43653 1.53185 1.54089 1.64742 2.07510 2.23454 2.43707 2.70149 2.81458 3.12288 3.40819 3.59377 3.69893 3.81945 3.86766 4.25952 4.54105 4.56673 4.64206 4.68293 4.75541 4.82244 4.91190 5.07164 5.18788 5.28707 5.40676 5.52091 5.79252 5.80887 6.08293 6.17221 6.23942 6.60398 6.68751 6.93546 6.97479 7.20765 8.41455 Molecular weight = 303.08amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.004796 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.727697 B = 5836.942167 C = 7758.131548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.038 3.962 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.075 3.925 10 C -0.160 4.160 11 C -0.122 4.122 12 C -0.219 4.219 13 C -0.117 4.117 14 C 0.012 3.988 15 N -0.621 5.621 16 C 0.540 3.460 17 O -0.557 6.557 18 C -0.076 4.076 19 C -0.129 4.129 20 C 0.128 3.872 21 F -0.126 7.126 22 C -0.151 4.151 23 C 0.127 3.873 24 F -0.126 7.126 25 C -0.108 4.108 26 H 0.286 0.714 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.127 0.873 31 H 0.414 0.586 32 H 0.155 0.845 33 H 0.183 0.817 34 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.487 -2.798 7.526 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.176 4.176 3 Si 0.800 3.200 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.177 1.177 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.072 3.928 10 C -0.181 4.181 11 C -0.141 4.141 12 C -0.238 4.238 13 C -0.137 4.137 14 C -0.083 4.083 15 N -0.263 5.263 16 C 0.329 3.671 17 O -0.438 6.438 18 C -0.079 4.079 19 C -0.149 4.149 20 C 0.109 3.891 21 F -0.104 7.104 22 C -0.170 4.170 23 C 0.107 3.893 24 F -0.104 7.104 25 C -0.128 4.128 26 H 0.096 0.904 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.135 0.865 30 H 0.145 0.855 31 H 0.252 0.748 32 H 0.173 0.827 33 H 0.200 0.800 34 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.087 -3.355 7.271 14.499 hybrid contribution 0.111 1.125 0.046 1.131 sum 12.198 -2.231 7.317 14.399 Atomic orbital electron populations 1.69843 1.08806 1.30327 1.37155 1.26644 0.95513 1.04057 0.91395 0.85282 0.78629 0.75921 0.80132 1.18883 1.19990 1.17710 1.19491 0.95048 0.90513 1.47595 0.89894 1.17699 0.93661 0.91915 0.89559 1.20949 0.98704 0.96801 1.01606 1.20775 0.99508 0.93343 1.00423 1.20718 0.99593 0.98281 1.05223 1.21231 0.95015 0.97116 1.00306 1.18004 0.92149 0.96636 1.01494 1.42765 1.23777 1.11871 1.47897 1.18468 0.84084 0.83856 0.80696 1.90664 1.71195 1.29546 1.52412 1.19272 0.94780 0.93831 1.00020 1.21521 0.96562 0.98659 0.98161 1.16986 0.93580 0.81442 0.97140 1.91573 1.89303 1.43908 1.85640 1.21409 1.03078 0.89546 1.02968 1.16956 0.90425 0.82856 0.99026 1.91564 1.75940 1.49992 1.92927 1.21283 0.93333 0.99926 0.98224 0.90370 0.87580 0.86937 0.86516 0.85540 0.74771 0.82705 0.80001 0.82983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.47 10.96 21.83 0.24 -41.23 16 2 C 0.04 1.78 5.31 85.26 0.45 2.23 16 3 Si 0.98 35.47 29.56 68.60 2.03 37.49 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 5 H -0.28 -9.75 7.11 99.48 0.71 -9.05 16 6 H -0.25 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.50 -24.16 8.19 23.38 0.19 -23.97 16 8 H 0.08 3.74 7.46 -2.91 -0.02 3.72 16 9 C 0.08 3.84 5.52 -21.17 -0.12 3.73 16 10 C -0.16 -8.21 8.57 22.47 0.19 -8.02 16 11 C -0.12 -5.64 9.96 22.01 0.22 -5.42 16 12 C -0.22 -9.86 10.04 22.42 0.22 -9.63 16 13 C -0.12 -5.51 8.78 22.37 0.20 -5.32 16 14 C 0.01 0.57 6.48 38.91 0.25 0.82 16 15 N -0.62 -24.53 5.05 -304.91 -1.54 -26.06 16 16 C 0.54 19.76 7.65 86.77 0.66 20.42 16 17 O -0.56 -23.60 13.27 -3.92 -0.05 -23.65 16 18 C -0.08 -2.08 5.87 -20.10 -0.12 -2.19 16 19 C -0.13 -2.99 9.52 22.58 0.21 -2.77 16 20 C 0.13 2.52 7.29 22.33 0.16 2.69 16 21 F -0.13 -2.54 17.26 44.97 0.78 -1.76 16 22 C -0.15 -2.51 10.00 22.41 0.22 -2.29 16 23 C 0.13 2.51 7.29 22.33 0.16 2.68 16 24 F -0.13 -2.49 17.26 44.97 0.78 -1.71 16 25 C -0.11 -2.61 9.57 22.58 0.22 -2.40 16 26 H 0.29 13.04 8.30 -92.70 -0.77 12.27 16 27 H 0.11 5.64 6.47 -2.92 -0.02 5.62 16 28 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 29 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 30 H 0.13 5.90 5.53 -2.91 -0.02 5.89 16 31 H 0.41 14.52 5.78 -92.71 -0.54 13.98 16 32 H 0.16 3.39 6.41 -2.91 -0.02 3.37 16 33 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 34 H 0.15 3.79 7.65 -2.91 -0.02 3.77 16 Total: -1.00 -58.51 306.49 6.02 -52.49 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.65 Total: 33.89 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.14 Total: -29.46 kcal Atomic # 7 Polarization: -66.00 SS G_CDS: -1.30 Total: -67.30 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 1.55 Total: -3.47 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.03 Total: 37.49 kcal Total: -58.51 6.02 -52.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336326039.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.849 kcal (2) G-P(sol) polarization free energy of solvation -58.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds