Wall clock time and date at job start Tue Mar 31 2020 08:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 119.99806 * 2 1 4 4 H 1.48504 * 109.47017 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47113 * 299.99505 * 3 2 1 6 6 H 1.48499 * 109.47381 * 59.99380 * 3 2 1 7 7 C 1.37875 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00013 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00235 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47440 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00009 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00325 * 179.97438 * 11 10 9 14 14 N 1.40096 * 120.00135 * 179.97438 * 13 11 10 15 15 C 1.37395 * 120.00322 * 179.97438 * 14 13 11 16 16 N 1.31993 * 126.56026 * 179.70837 * 15 14 13 17 17 C 1.35052 * 105.47812 * 179.89736 * 16 15 14 18 18 C 1.48432 * 126.33805 * 180.12006 * 17 16 15 19 19 C 1.39754 * 120.53553 * 180.28525 * 18 17 16 20 20 C 1.38415 * 118.31695 * 179.97438 * 19 18 17 21 21 C 1.38311 * 119.27604 * 0.02562 * 20 19 18 22 22 N 1.31889 * 121.02683 * 359.97438 * 21 20 19 23 23 C 1.31751 * 121.84889 * 359.73443 * 22 21 20 24 24 N 1.30812 * 107.32308 * 0.37553 * 17 16 15 25 25 O 1.21257 * 110.33885 * 359.76102 * 24 17 16 26 26 H 0.97000 * 120.00489 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47095 * 59.99090 * 9 7 2 28 28 H 1.08997 * 109.46669 * 299.99500 * 9 7 2 29 29 H 1.08996 * 109.47503 * 59.99605 * 10 9 7 30 30 H 1.09003 * 109.46995 * 300.00038 * 10 9 7 31 31 H 0.97005 * 119.99863 * 359.97438 * 13 11 10 32 32 H 0.97000 * 120.00509 * 359.97438 * 14 13 11 33 33 H 1.08003 * 120.84466 * 359.94939 * 19 18 17 34 34 H 1.07998 * 120.36587 * 180.02562 * 20 19 18 35 35 H 1.08008 * 119.48571 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.69912 * 180.29141 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2790 -4.9672 0.0000 13 7 2.1658 -6.1343 -0.0007 14 7 1.4653 -7.3476 -0.0008 15 6 2.1523 -8.5375 -0.0020 16 7 1.6272 -9.7485 0.0032 17 6 2.6780 -10.5969 -0.0029 18 6 2.6111 -12.0797 -0.0029 19 6 3.7816 -12.8433 -0.0037 20 6 3.6658 -14.2226 -0.0032 21 6 2.4070 -14.7956 -0.0025 22 7 1.3200 -14.0486 -0.0019 23 6 1.3809 -12.7325 0.0034 24 7 3.7655 -9.8700 -0.0031 25 8 3.4841 -8.6905 -0.0026 26 1 -0.4851 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8904 30 1 2.8719 -3.6042 -0.8895 31 1 3.1358 -6.1343 -0.0012 32 1 0.4953 -7.3477 0.0000 33 1 4.7520 -12.3692 -0.0050 34 1 4.5487 -14.8446 -0.0033 35 1 2.3127 -15.8716 -0.0026 36 1 0.4685 -12.1547 0.0085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291729310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:25 Heat of formation + Delta-G solvation = 108.056759 kcal Electronic energy + Delta-G solvation = -22333.423507 eV Core-core repulsion = 18629.646412 eV Total energy + Delta-G solvation = -3703.777095 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -45.57512 -40.50167 -39.80947 -36.87172 -36.08060 -33.66724 -33.56019 -32.54805 -31.61093 -31.07356 -29.73859 -25.88499 -25.46837 -24.45584 -23.33163 -22.51142 -21.68929 -20.49247 -19.16970 -18.38894 -17.80592 -17.49953 -16.97301 -16.67151 -16.11682 -16.05912 -15.51482 -15.41510 -14.52620 -14.44192 -14.27647 -13.72023 -13.57304 -13.46396 -12.69581 -12.48578 -12.44048 -12.31671 -12.16514 -11.35876 -11.25929 -11.03389 -10.68175 -10.58881 -10.19876 -10.14707 -9.98681 -9.96449 -9.61258 -9.35728 -9.22236 -8.43847 -8.20242 -6.06916 -4.12247 0.16972 0.76636 1.13729 1.23538 2.21303 2.39047 2.78695 3.23497 3.26919 3.34748 3.37272 3.41101 3.79516 4.06027 4.36534 4.39421 4.43037 4.48296 4.71526 4.85766 5.07923 5.23553 5.28895 5.30565 5.58044 5.65446 5.70766 5.94024 5.95009 6.15054 6.24045 6.62650 6.83418 7.30362 7.46332 7.61017 7.67083 7.92300 7.95943 8.21230 8.35967 8.95345 9.52437 11.03892 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.059298 B = 0.001974 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.079469 B =14183.405147 C =14635.037866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.036 3.964 10 C -0.116 4.116 11 C 0.517 3.483 12 O -0.521 6.521 13 N -0.534 5.534 14 N -0.456 5.456 15 C 0.444 3.556 16 N -0.527 5.527 17 C 0.250 3.750 18 C -0.069 4.069 19 C -0.040 4.040 20 C -0.175 4.175 21 C 0.113 3.887 22 N -0.484 5.484 23 C 0.148 3.852 24 N -0.385 5.385 25 O 0.038 5.962 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.428 0.572 32 H 0.464 0.536 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.162 0.838 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.985 -26.382 -0.006 27.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.569 4.569 8 H 0.077 0.923 9 C -0.002 4.002 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.392 6.392 13 N -0.288 5.288 14 N -0.200 5.200 15 C 0.134 3.866 16 N -0.275 5.275 17 C -0.022 4.022 18 C -0.073 4.073 19 C -0.067 4.067 20 C -0.195 4.195 21 C -0.044 4.044 22 N -0.192 5.192 23 C -0.011 4.011 24 N -0.107 5.107 25 O -0.009 6.009 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.269 0.731 32 H 0.314 0.686 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.706 -27.032 -0.002 28.109 hybrid contribution 1.344 1.558 -0.005 2.058 sum 9.051 -25.474 -0.007 27.034 Atomic orbital electron populations 1.69991 1.06091 1.26721 1.49813 1.25019 0.94845 0.99355 0.95091 0.86503 0.79984 0.83625 0.77653 1.19682 1.20971 1.20973 1.21190 0.93063 0.90677 1.51927 0.92290 1.18977 0.93112 0.89031 0.99050 1.21961 1.01011 0.89076 1.03671 1.22313 0.89313 0.83409 0.74378 1.90740 1.14076 1.86448 1.47976 1.45806 1.08475 0.94575 1.79913 1.41694 1.07066 0.92156 1.79114 1.23766 0.81765 0.87859 0.93259 1.72362 1.27083 0.95805 1.32268 1.23157 0.83887 0.95535 0.99656 1.18373 0.95836 0.86547 1.06585 1.21666 0.98343 0.93808 0.92927 1.22119 0.99751 0.94920 1.02716 1.23020 0.87865 1.00686 0.92870 1.67846 1.32655 1.06197 1.12539 1.23020 0.96894 0.90048 0.91165 1.74773 1.21548 0.87959 1.26401 1.85327 1.22827 1.21886 1.70837 0.92851 0.95478 0.95468 0.89087 0.89096 0.73102 0.68607 0.83868 0.83905 0.82127 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 20.77 29.54 -169.99 -5.02 15.74 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.53 -14.04 9.11 -34.44 -0.31 -14.36 16 8 H 0.06 1.46 7.74 -52.48 -0.41 1.06 16 9 C 0.04 0.88 4.26 -27.89 -0.12 0.76 16 10 C -0.12 -1.99 5.64 -27.89 -0.16 -2.14 16 11 C 0.52 8.34 7.95 -10.99 -0.09 8.26 16 12 O -0.52 -10.56 15.82 5.56 0.09 -10.47 16 13 N -0.53 -6.39 6.31 31.22 0.20 -6.20 16 14 N -0.46 -5.40 6.37 29.65 0.19 -5.21 16 15 C 0.44 5.30 9.29 -87.43 -0.81 4.49 16 16 N -0.53 -6.55 11.32 -13.10 -0.15 -6.70 16 17 C 0.25 2.99 7.81 -156.22 -1.22 1.77 16 18 C -0.07 -0.70 5.89 -104.75 -0.62 -1.32 16 19 C -0.04 -0.32 9.83 -38.95 -0.38 -0.70 16 20 C -0.18 -1.05 10.10 -39.49 -0.40 -1.45 16 21 C 0.11 0.77 11.17 -17.50 -0.20 0.58 16 22 N -0.48 -4.66 10.35 -12.98 -0.13 -4.80 16 23 C 0.15 1.47 10.87 -17.20 -0.19 1.28 16 24 N -0.39 -4.73 11.91 31.18 0.37 -4.36 16 25 O 0.04 0.45 10.94 17.02 0.19 0.64 16 26 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 27 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 29 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.43 3.86 8.40 -182.60 -1.53 2.33 16 32 H 0.46 5.57 8.12 -182.60 -1.48 4.09 16 33 H 0.14 1.01 7.95 -52.48 -0.42 0.60 16 34 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 35 H 0.16 0.60 8.06 -52.48 -0.42 0.18 16 36 H 0.17 1.59 7.88 -52.49 -0.41 1.18 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -33.22 331.55 -9.05 -42.27 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.92 Total: 0.85 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -4.59 Total: -1.31 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: 1.21 Total: -52.72 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.27 Total: -9.84 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.22 -9.05 -42.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291729310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.326 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds