Wall clock time and date at job start Tue Mar 31 2020 08:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34774 * 116.99570 * 2 1 4 4 O 1.21511 * 120.00356 * 359.97438 * 3 2 1 5 5 C 1.47372 * 119.99480 * 179.97438 * 3 2 1 6 6 C 1.39367 * 120.39573 * 5.09504 * 5 3 2 7 7 C 1.38426 * 120.20006 * 180.02562 * 6 5 3 8 8 C 1.37924 * 120.94122 * 359.97438 * 7 6 5 9 9 C 1.39112 * 120.15631 * 0.02562 * 8 7 6 10 10 N 1.37131 * 134.51688 * 180.02562 * 9 8 7 11 11 H 0.96995 * 124.39874 * 359.97438 * 10 9 8 12 12 N 1.28388 * 111.20449 * 179.97438 * 10 9 8 13 13 C 1.31764 * 111.88571 * 359.97438 * 12 10 9 14 14 C 1.47318 * 126.80992 * 180.02562 * 13 12 10 15 15 O 1.21648 * 119.99758 * 102.13807 * 14 13 12 16 16 N 1.34771 * 120.00224 * 282.14538 * 14 13 12 17 17 C 1.46504 * 119.99975 * 5.10087 * 16 14 13 18 18 C 1.36890 * 120.00266 * 185.10508 * 16 14 13 19 19 H 1.07992 * 119.99649 * 25.02804 * 18 16 14 20 20 C 1.39027 * 120.00066 * 205.02685 * 18 16 14 21 21 N 1.31382 * 119.99866 * 10.57118 * 20 18 16 22 22 Si 1.86795 * 120.00141 * 190.57558 * 20 18 16 23 23 H 1.48509 * 109.47017 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47403 * 119.99719 * 22 20 18 25 25 H 1.48503 * 109.47143 * 240.00191 * 22 20 18 26 26 C 1.40481 * 120.38978 * 185.11763 * 5 3 2 27 27 H 1.08996 * 109.46713 * 60.00087 * 1 2 3 28 28 H 1.08994 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47266 * 300.00225 * 1 2 3 30 30 H 1.07999 * 119.89717 * 0.29713 * 6 5 3 31 31 H 1.07996 * 119.52638 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.91976 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.46952 * 85.44057 * 17 16 14 34 34 H 1.08997 * 109.47032 * 205.44846 * 17 16 14 35 35 H 1.09003 * 109.47130 * 325.44726 * 17 16 14 36 36 H 0.97000 * 119.99581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5355 1.2780 0.0006 6 6 4.3024 0.1191 -0.1056 7 6 5.6845 0.1962 -0.1042 8 6 6.3269 1.4122 0.0011 9 6 5.5879 2.5859 0.1086 10 7 5.9056 3.9149 0.2248 11 1 6.8111 4.2615 0.2517 12 7 4.8488 4.6407 0.2935 13 6 3.7502 3.9156 0.2334 14 6 2.3630 4.4093 0.2822 15 8 1.7120 4.4960 -0.7417 16 7 1.8154 4.7648 1.4612 17 6 2.6323 4.7672 2.6773 18 6 0.4958 5.1237 1.5224 19 1 -0.1981 4.7584 0.7800 20 6 0.0490 5.9585 2.5405 21 7 0.9151 6.5687 3.3174 22 14 -1.7828 6.2124 2.8038 23 1 -2.5414 5.4193 1.8033 24 1 -2.1526 5.7681 4.1717 25 1 -2.1109 7.6520 2.6452 26 6 4.1820 2.5205 0.1087 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8169 -0.8415 -0.1938 31 1 6.2681 -0.7086 -0.1875 32 1 7.4061 1.4532 0.0002 33 1 3.1569 5.7190 2.7607 34 1 1.9898 4.6289 3.5469 35 1 3.3581 3.9554 2.6291 36 1 0.6033 7.1514 4.0274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154607222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:44 Heat of formation + Delta-G solvation = -2.960812 kcal Electronic energy + Delta-G solvation = -25272.149625 eV Core-core repulsion = 21531.265695 eV Total energy + Delta-G solvation = -3740.883929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20189 -39.86669 -37.94246 -37.41002 -35.91973 -34.40701 -32.40518 -31.35500 -30.25580 -29.96599 -27.39518 -26.20378 -24.84140 -24.19443 -22.63481 -22.33597 -21.12089 -18.81864 -18.09808 -17.30852 -16.69562 -16.58021 -16.07150 -15.96439 -15.82375 -15.19488 -14.90157 -14.59848 -14.04618 -13.91065 -13.65890 -13.07630 -12.99255 -12.48798 -12.16931 -11.93596 -11.82515 -11.67258 -11.41598 -11.28217 -11.12978 -10.77677 -10.54485 -10.41585 -10.24897 -10.18419 -9.90645 -9.79330 -8.86375 -8.74951 -8.44277 -7.88906 -7.45865 -6.16563 -3.70019 0.51434 1.37604 2.61120 2.86797 2.87843 2.99116 3.24773 3.33842 3.41683 3.81388 3.99776 4.22026 4.48070 4.64531 4.82052 5.01122 5.10123 5.13108 5.35952 5.37398 5.42545 5.49602 5.60707 5.71971 5.83976 5.94010 6.17836 6.23416 6.39153 6.53807 6.67735 6.74068 7.01930 7.23339 7.35812 7.72857 8.19399 8.21315 8.32946 8.69023 9.36731 9.59192 10.19267 10.89310 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.006107 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.053385 B = 4584.165633 C = 5859.747484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.364 6.364 3 C 0.477 3.523 4 O -0.431 6.431 5 C -0.046 4.046 6 C -0.087 4.087 7 C -0.104 4.104 8 C -0.091 4.091 9 C 0.061 3.939 10 N -0.432 5.432 11 H 0.444 0.556 12 N -0.219 5.219 13 C 0.070 3.930 14 C 0.552 3.448 15 O -0.558 6.558 16 N -0.431 5.431 17 C 0.121 3.879 18 C -0.285 4.285 19 H 0.099 0.901 20 C 0.024 3.976 21 N -0.886 5.886 22 Si 0.926 3.074 23 H -0.268 1.268 24 H -0.283 1.283 25 H -0.282 1.282 26 C -0.084 4.084 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.065 0.935 30 H 0.143 0.857 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.013 0.987 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.451 -14.662 -2.500 18.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.282 6.282 3 C 0.317 3.683 4 O -0.314 6.314 5 C -0.050 4.050 6 C -0.107 4.107 7 C -0.124 4.124 8 C -0.112 4.112 9 C -0.053 4.053 10 N -0.149 5.149 11 H 0.288 0.712 12 N -0.044 5.044 13 C -0.104 4.104 14 C 0.337 3.663 15 O -0.439 6.439 16 N -0.150 5.150 17 C -0.023 4.023 18 C -0.414 4.414 19 H 0.117 0.883 20 C -0.178 4.178 21 N -0.526 5.526 22 Si 0.753 3.247 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.093 4.093 27 H 0.082 0.918 28 H 0.115 0.885 29 H 0.084 0.916 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.150 0.850 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.032 0.968 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 10.205 -13.003 -2.737 16.755 hybrid contribution -0.512 -0.322 0.323 0.686 sum 9.693 -13.325 -2.414 16.654 Atomic orbital electron populations 1.23210 0.76145 1.02931 1.03167 1.86463 1.23411 1.32917 1.85449 1.21134 0.89048 0.82205 0.75877 1.91185 1.65668 1.34228 1.40294 1.18357 0.89553 0.92189 1.04884 1.21354 0.93630 0.97508 0.98176 1.20858 0.94114 0.97018 1.00456 1.20203 0.99398 0.89322 1.02300 1.19030 0.93910 0.87274 1.05093 1.43102 1.08257 1.01929 1.61636 0.71184 1.73294 0.92922 1.23101 1.15115 1.23637 0.94711 0.88539 1.03533 1.16150 0.81972 0.83547 0.84664 1.90615 1.61157 1.58514 1.33590 1.43177 1.09873 1.57442 1.04532 1.21374 0.93767 0.97992 0.89201 1.19650 0.83119 1.26060 1.12524 0.88313 1.25377 0.99818 0.95280 0.97280 1.70007 1.33598 1.28967 1.20034 0.85865 0.82764 0.78098 0.77986 1.19241 1.20877 1.20839 1.19406 0.91935 0.92784 1.05145 0.91837 0.88542 0.91595 0.83967 0.84463 0.85050 0.93060 0.90672 0.96843 0.92524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.57 101.05 1.07 1.59 16 2 O -0.36 -5.74 9.84 -40.70 -0.40 -6.14 16 3 C 0.48 9.26 7.88 34.45 0.27 9.53 16 4 O -0.43 -10.47 11.63 -26.95 -0.31 -10.78 16 5 C -0.05 -0.80 5.88 -104.92 -0.62 -1.42 16 6 C -0.09 -1.08 9.62 -39.09 -0.38 -1.45 16 7 C -0.10 -1.01 9.99 -39.63 -0.40 -1.41 16 8 C -0.09 -0.95 10.06 -39.37 -0.40 -1.35 16 9 C 0.06 0.91 7.37 -84.23 -0.62 0.29 16 10 N -0.43 -6.42 6.85 32.33 0.22 -6.20 16 11 H 0.44 4.43 8.96 -190.49 -1.71 2.73 16 12 N -0.22 -4.45 12.12 34.41 0.42 -4.03 16 13 C 0.07 1.63 5.28 -80.84 -0.43 1.20 16 14 C 0.55 15.34 4.78 -12.57 -0.06 15.28 16 15 O -0.56 -17.29 15.35 -17.81 -0.27 -17.56 16 16 N -0.43 -12.21 3.01 -123.46 -0.37 -12.58 16 17 C 0.12 3.07 8.51 59.85 0.51 3.58 16 18 C -0.29 -8.48 9.20 -15.00 -0.14 -8.61 16 19 H 0.10 3.08 7.50 -52.49 -0.39 2.68 16 20 C 0.02 0.68 5.09 -17.45 -0.09 0.60 16 21 N -0.89 -24.99 10.75 55.50 0.60 -24.39 16 22 Si 0.93 21.77 29.57 -169.99 -5.03 16.75 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C -0.08 -1.62 6.20 -104.75 -0.65 -2.27 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.14 1.42 7.62 -52.49 -0.40 1.02 16 31 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 33 H 0.05 1.34 7.84 -51.93 -0.41 0.93 16 34 H 0.07 1.96 6.75 -51.93 -0.35 1.61 16 35 H 0.01 0.30 6.97 -51.93 -0.36 -0.06 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 315.33 15.07 4.75 4.75 Total: -1.00 -37.65 315.33 -7.19 -44.83 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -4.87 Total: -0.21 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: -1.92 Total: 15.56 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.86 Total: -47.21 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.99 Total: -34.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -37.65 -7.19 -44.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154607222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.871 kcal (2) G-P(sol) polarization free energy of solvation -37.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds