Wall clock time and date at job start Tue Mar 31 2020 08:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34774 * 116.99570 * 2 1 4 4 O 1.21511 * 120.00356 * 359.97438 * 3 2 1 5 5 C 1.47372 * 119.99480 * 179.97438 * 3 2 1 6 6 C 1.39367 * 120.39573 * 5.09504 * 5 3 2 7 7 C 1.38426 * 120.20006 * 180.02562 * 6 5 3 8 8 C 1.37924 * 120.94122 * 359.97438 * 7 6 5 9 9 C 1.39112 * 120.15631 * 0.02562 * 8 7 6 10 10 N 1.37131 * 134.51688 * 180.02562 * 9 8 7 11 11 H 0.96995 * 124.39874 * 359.97438 * 10 9 8 12 12 N 1.28388 * 111.20449 * 179.97438 * 10 9 8 13 13 C 1.31764 * 111.88571 * 359.97438 * 12 10 9 14 14 C 1.47318 * 126.80992 * 180.02562 * 13 12 10 15 15 O 1.21648 * 119.99758 * 102.13807 * 14 13 12 16 16 N 1.34771 * 120.00224 * 282.14538 * 14 13 12 17 17 C 1.46504 * 119.99975 * 5.10087 * 16 14 13 18 18 C 1.36890 * 120.00266 * 185.10508 * 16 14 13 19 19 H 1.07992 * 119.99649 * 25.02804 * 18 16 14 20 20 C 1.39027 * 120.00066 * 205.02685 * 18 16 14 21 21 N 1.31382 * 119.99866 * 10.57118 * 20 18 16 22 22 Si 1.86795 * 120.00141 * 190.57558 * 20 18 16 23 23 H 1.48509 * 109.47017 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47403 * 119.99719 * 22 20 18 25 25 H 1.48503 * 109.47143 * 240.00191 * 22 20 18 26 26 C 1.40481 * 120.38978 * 185.11763 * 5 3 2 27 27 H 1.08996 * 109.46713 * 60.00087 * 1 2 3 28 28 H 1.08994 * 109.46885 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47266 * 300.00225 * 1 2 3 30 30 H 1.07999 * 119.89717 * 0.29713 * 6 5 3 31 31 H 1.07996 * 119.52638 * 180.02562 * 7 6 5 32 32 H 1.08005 * 119.91976 * 180.02562 * 8 7 6 33 33 H 1.08997 * 109.46952 * 85.44057 * 17 16 14 34 34 H 1.08997 * 109.47032 * 205.44846 * 17 16 14 35 35 H 1.09003 * 109.47130 * 325.44726 * 17 16 14 36 36 H 0.97000 * 119.99581 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5355 1.2780 0.0006 6 6 4.3024 0.1191 -0.1056 7 6 5.6845 0.1962 -0.1042 8 6 6.3269 1.4122 0.0011 9 6 5.5879 2.5859 0.1086 10 7 5.9056 3.9149 0.2248 11 1 6.8111 4.2615 0.2517 12 7 4.8488 4.6407 0.2935 13 6 3.7502 3.9156 0.2334 14 6 2.3630 4.4093 0.2822 15 8 1.7120 4.4960 -0.7417 16 7 1.8154 4.7648 1.4612 17 6 2.6323 4.7672 2.6773 18 6 0.4958 5.1237 1.5224 19 1 -0.1981 4.7584 0.7800 20 6 0.0490 5.9585 2.5405 21 7 0.9151 6.5687 3.3174 22 14 -1.7828 6.2124 2.8038 23 1 -2.5414 5.4193 1.8033 24 1 -2.1526 5.7681 4.1717 25 1 -2.1109 7.6520 2.6452 26 6 4.1820 2.5205 0.1087 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.8169 -0.8415 -0.1938 31 1 6.2681 -0.7086 -0.1875 32 1 7.4061 1.4532 0.0002 33 1 3.1569 5.7190 2.7607 34 1 1.9898 4.6289 3.5469 35 1 3.3581 3.9554 2.6291 36 1 0.6033 7.1514 4.0274 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154607222.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:06:43 Heat of formation + Delta-G solvation = -31.056976 kcal Electronic energy + Delta-G solvation = -25273.367966 eV Core-core repulsion = 21531.265695 eV Total energy + Delta-G solvation = -3742.102271 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.50535 -41.24842 -39.97657 -38.53099 -37.35275 -36.57732 -33.90132 -33.28810 -31.48498 -31.19610 -28.57942 -28.30102 -26.85461 -25.34181 -24.40056 -23.46354 -22.44616 -20.47932 -19.50120 -18.94947 -18.48423 -17.99372 -17.66175 -17.31629 -17.16646 -16.67938 -16.52082 -15.88655 -15.83987 -15.63284 -15.02898 -14.59748 -14.43566 -14.34043 -13.58166 -13.35451 -13.21688 -13.16665 -13.04685 -12.80601 -12.71069 -12.69122 -12.42624 -12.12300 -12.01063 -11.74937 -11.37249 -11.18244 -10.99186 -10.54763 -9.87414 -9.64808 -9.10786 -8.32673 -5.95816 -0.63379 0.34819 1.04719 1.34602 1.37414 1.53662 1.61987 1.69250 1.77343 2.10413 2.29621 2.71380 2.93312 3.07659 3.44612 3.67726 3.79138 3.92105 4.05452 4.26932 4.31823 4.34789 4.37346 4.50048 4.61011 4.71944 4.78849 4.90563 5.08916 5.21604 5.24535 5.28798 5.41130 5.46453 5.72129 6.12240 6.18848 6.51756 6.82373 6.83127 7.19944 7.45769 8.08391 8.72937 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.006107 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.053385 B = 4584.165633 C = 5859.747484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.351 6.351 3 C 0.472 3.528 4 O -0.498 6.498 5 C -0.101 4.101 6 C -0.053 4.053 7 C -0.089 4.089 8 C -0.059 4.059 9 C 0.058 3.942 10 N -0.402 5.402 11 H 0.466 0.534 12 N -0.232 5.232 13 C 0.012 3.988 14 C 0.555 3.445 15 O -0.611 6.611 16 N -0.449 5.449 17 C 0.144 3.856 18 C -0.324 4.324 19 H 0.066 0.934 20 C -0.010 4.010 21 N -0.903 5.903 22 Si 0.995 3.005 23 H -0.275 1.275 24 H -0.261 1.261 25 H -0.272 1.272 26 C -0.115 4.115 27 H 0.048 0.952 28 H 0.148 0.852 29 H 0.046 0.954 30 H 0.169 0.831 31 H 0.197 0.803 32 H 0.188 0.812 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.032 0.968 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.734 -17.849 -1.966 22.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.385 6.385 5 C -0.104 4.104 6 C -0.072 4.072 7 C -0.109 4.109 8 C -0.079 4.079 9 C -0.056 4.056 10 N -0.124 5.124 11 H 0.315 0.685 12 N -0.061 5.061 13 C -0.160 4.160 14 C 0.342 3.658 15 O -0.495 6.495 16 N -0.167 5.167 17 C 0.000 4.000 18 C -0.452 4.452 19 H 0.084 0.916 20 C -0.210 4.210 21 N -0.543 5.543 22 Si 0.818 3.182 23 H -0.199 1.199 24 H -0.186 1.186 25 H -0.198 1.198 26 C -0.123 4.123 27 H 0.067 0.933 28 H 0.166 0.834 29 H 0.065 0.935 30 H 0.187 0.813 31 H 0.214 0.786 32 H 0.205 0.795 33 H 0.056 0.944 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.541 -16.225 -2.175 21.245 hybrid contribution -1.324 0.482 0.100 1.413 sum 12.216 -15.743 -2.075 20.034 Atomic orbital electron populations 1.23456 0.75100 1.05643 1.01602 1.86454 1.24426 1.31169 1.84757 1.21844 0.90399 0.82064 0.74033 1.91165 1.67173 1.36301 1.43854 1.18507 0.88455 0.93568 1.09891 1.21847 0.94987 0.96563 0.93841 1.21562 0.92909 0.98888 0.97560 1.20953 1.01893 0.87272 0.97823 1.19410 0.92345 0.88096 1.05792 1.43073 1.07993 1.02162 1.59167 0.68490 1.73085 0.93680 1.24315 1.14976 1.22788 0.92879 0.91386 1.08945 1.16692 0.83830 0.81683 0.83588 1.90524 1.63571 1.60191 1.35199 1.43377 1.09786 1.57933 1.05639 1.21117 0.93224 0.97880 0.87749 1.19527 0.84035 1.28195 1.13422 0.91577 1.26217 1.04647 0.94066 0.96115 1.70079 1.35482 1.28687 1.20038 0.84869 0.76723 0.78164 0.78471 1.19932 1.18609 1.19783 1.19565 0.94205 0.91523 1.06980 0.93273 0.83416 0.93494 0.81308 0.78612 0.79490 0.94365 0.91961 0.94930 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.98 10.57 113.37 1.20 2.18 16 2 O -0.35 -11.21 9.84 -56.85 -0.56 -11.77 16 3 C 0.47 19.40 7.88 70.23 0.55 19.96 16 4 O -0.50 -26.57 11.63 27.14 0.32 -26.25 16 5 C -0.10 -3.47 5.88 -20.05 -0.12 -3.58 16 6 C -0.05 -1.09 9.62 22.59 0.22 -0.88 16 7 C -0.09 -1.09 9.99 22.24 0.22 -0.87 16 8 C -0.06 -0.84 10.06 22.41 0.23 -0.61 16 9 C 0.06 1.55 7.37 39.14 0.29 1.84 16 10 N -0.40 -11.21 6.85 -51.64 -0.35 -11.56 16 11 H 0.47 7.87 8.96 -220.04 -1.97 5.89 16 12 N -0.23 -9.65 12.12 -45.06 -0.55 -10.19 16 13 C 0.01 0.58 5.28 43.72 0.23 0.81 16 14 C 0.55 33.49 4.78 86.63 0.41 33.90 16 15 O -0.61 -41.61 15.35 17.85 0.27 -41.34 16 16 N -0.45 -27.41 3.01 -662.77 -1.99 -29.40 16 17 C 0.14 7.75 8.51 127.77 1.09 8.84 16 18 C -0.32 -20.76 9.20 84.09 0.77 -19.99 16 19 H 0.07 4.56 7.50 -2.91 -0.02 4.54 16 20 C -0.01 -0.59 5.09 84.95 0.43 -0.16 16 21 N -0.90 -52.59 10.75 21.68 0.23 -52.36 16 22 Si 0.99 46.31 29.57 68.60 2.03 48.34 16 23 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 26 C -0.11 -4.45 6.20 -19.95 -0.12 -4.57 16 27 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 28 H 0.15 2.50 8.14 -2.39 -0.02 2.48 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.17 2.52 7.62 -2.91 -0.02 2.50 16 31 H 0.20 0.35 8.06 -2.91 -0.02 0.33 16 32 H 0.19 0.74 8.06 -2.91 -0.02 0.72 16 33 H 0.04 2.10 7.84 -2.39 -0.02 2.08 16 34 H 0.06 3.42 6.75 -2.39 -0.02 3.41 16 35 H 0.03 1.58 6.97 -2.39 -0.02 1.56 16 36 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -95.60 315.33 3.98 -91.63 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -0.82 Total: 6.05 kcal Atomic # 6 Polarization: 31.46 SS G_CDS: 5.40 Total: 36.86 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -2.66 Total: -103.52 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: 0.03 Total: -79.36 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -95.60 3.98 -91.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154607222.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.568 kcal (2) G-P(sol) polarization free energy of solvation -95.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds