Wall clock time and date at job start Tue Mar 31 2020 08:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46640 * 214.99575 * 3 2 1 5 5 C 1.36904 * 119.99680 * 291.09526 * 4 3 2 6 6 H 1.07998 * 120.00348 * 164.27103 * 5 4 3 7 7 C 1.39016 * 120.00399 * 344.26913 * 5 4 3 8 8 N 1.31391 * 119.99611 * 28.52640 * 7 5 4 9 9 Si 1.86798 * 120.00331 * 208.52022 * 7 5 4 10 10 H 1.48502 * 109.46884 * 89.99976 * 9 7 5 11 11 H 1.48506 * 109.47070 * 209.99966 * 9 7 5 12 12 H 1.48502 * 109.47142 * 330.00178 * 9 7 5 13 13 C 1.34768 * 120.00172 * 111.09938 * 4 3 2 14 14 O 1.21640 * 119.99933 * 186.31943 * 13 4 3 15 15 C 1.47367 * 120.00001 * 6.31806 * 13 4 3 16 16 C 1.39904 * 120.06779 * 139.16038 * 15 13 4 17 17 C 1.36595 * 119.92732 * 180.27738 * 16 15 13 18 18 C 1.39319 * 120.07262 * 359.49610 * 17 16 15 19 19 S 1.76199 * 119.93254 * 180.25657 * 18 17 16 20 20 C 1.81395 * 103.00036 * 5.25701 * 19 18 17 21 21 C 1.53003 * 109.47204 * 69.65186 * 20 19 18 22 22 C 1.53005 * 109.47139 * 189.64851 * 20 19 18 23 23 C 1.39318 * 120.13525 * 0.50324 * 18 17 16 24 24 C 1.36591 * 120.07303 * 359.75449 * 23 18 17 25 25 H 4.40639 * 5.51393 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.47149 * 94.99821 * 3 2 1 27 27 H 1.08997 * 109.47247 * 334.99144 * 3 2 1 28 28 H 0.97004 * 120.00123 * 180.02562 * 8 7 5 29 29 H 1.07999 * 120.03692 * 0.02562 * 16 15 13 30 30 H 1.08007 * 119.96315 * 179.75127 * 17 16 15 31 31 H 1.08996 * 109.47400 * 309.65350 * 20 19 18 32 32 H 1.09001 * 109.46969 * 305.38387 * 21 20 19 33 33 H 1.08999 * 109.46942 * 65.38627 * 21 20 19 34 34 H 1.08999 * 109.47391 * 185.38521 * 21 20 19 35 35 H 1.08999 * 109.46886 * 60.00075 * 22 20 19 36 36 H 1.08999 * 109.46785 * 179.97438 * 22 20 19 37 37 H 1.08999 * 109.47024 * 299.99840 * 22 20 19 38 38 H 1.08002 * 119.96499 * 179.72864 * 23 18 17 39 39 H 1.08001 * 120.04138 * 179.97438 * 24 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1338 1.1325 0.7922 5 6 2.9590 2.4119 0.3377 6 1 3.0794 3.2461 1.0130 7 6 2.6265 2.6376 -0.9931 8 7 1.9511 1.7320 -1.6641 9 14 3.1397 4.2281 -1.8274 10 1 4.4764 4.0516 -2.4499 11 1 2.1481 4.5797 -2.8755 12 1 3.2027 5.3175 -0.8202 13 6 3.7546 0.9140 1.9683 14 8 4.0568 1.8530 2.6801 15 6 4.0673 -0.4624 2.3920 16 6 5.2936 -0.7463 3.0026 17 6 5.5828 -2.0241 3.3890 18 6 4.6539 -3.0422 3.1852 19 16 5.0281 -4.6880 3.6912 20 6 6.6193 -4.5016 4.5419 21 6 6.4099 -3.7449 5.8552 22 6 7.2046 -5.8840 4.8376 23 6 3.4318 -2.7627 2.5774 24 6 3.1388 -1.4879 2.1840 25 1 -1.0501 -0.0002 -0.0004 26 1 3.0094 0.0904 -1.0237 27 1 3.0098 -0.9305 0.4344 28 1 1.7193 1.8892 -2.5928 29 1 6.0125 0.0432 3.1645 30 1 6.5310 -2.2447 3.8568 31 1 7.3076 -3.9437 3.9070 32 1 5.9055 -2.7999 5.6536 33 1 5.7989 -4.3468 6.5278 34 1 7.3763 -3.5490 6.3197 35 1 7.3537 -6.4230 3.9020 36 1 8.1610 -5.7718 5.3483 37 1 6.5163 -6.4417 5.4726 38 1 2.7155 -3.5549 2.4168 39 1 2.1914 -1.2719 1.7125 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281023708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:34 Heat of formation + Delta-G solvation = 59.589663 kcal Electronic energy + Delta-G solvation = -21802.366879 eV Core-core repulsion = 18610.488556 eV Total energy + Delta-G solvation = -3191.878323 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.31781 -39.24250 -37.24759 -35.86073 -34.19279 -33.17465 -32.21132 -32.08976 -28.44832 -28.06522 -27.01603 -24.56927 -23.91066 -22.47664 -21.27862 -19.88440 -18.73350 -18.36529 -18.17082 -17.25999 -16.63615 -16.42994 -16.10043 -15.89226 -15.57250 -15.18201 -14.82132 -14.73862 -14.40146 -14.28085 -13.94984 -13.80134 -13.57756 -13.36301 -13.12483 -12.82567 -12.47749 -12.32919 -12.27439 -12.22649 -12.15867 -11.96722 -11.29084 -11.09801 -10.94821 -10.72064 -10.59648 -10.36158 -10.10753 -9.96274 -8.44346 -8.36187 -5.91291 -0.19168 0.34372 0.52522 1.33118 1.39442 1.41305 1.50092 1.84569 2.06263 2.29726 2.34728 2.67476 2.88297 3.21515 3.74529 3.82605 3.87014 3.89426 3.92502 3.95433 4.23785 4.31729 4.47243 4.54686 4.59903 4.73526 4.78282 4.87389 4.93780 4.98613 5.05992 5.14435 5.17603 5.25221 5.28847 5.37455 5.41022 5.44404 5.74970 5.97533 6.37639 7.04813 7.14117 7.31752 7.89374 8.50576 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.026021 B = 0.003562 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.811917 B = 7857.914349 C = 8435.826854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.142 4.142 3 C 0.206 3.794 4 N -0.434 5.434 5 C -0.363 4.363 6 H 0.076 0.924 7 C 0.017 3.983 8 N -0.849 5.849 9 Si 0.980 3.020 10 H -0.268 1.268 11 H -0.270 1.270 12 H -0.277 1.277 13 C 0.464 3.536 14 O -0.633 6.633 15 C -0.124 4.124 16 C -0.066 4.066 17 C -0.127 4.127 18 C -0.076 4.076 19 S -0.117 6.117 20 C -0.081 4.081 21 C -0.154 4.154 22 C -0.130 4.130 23 C -0.102 4.102 24 C -0.093 4.093 25 H 0.235 0.765 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.277 0.723 29 H 0.125 0.875 30 H 0.155 0.845 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.151 0.849 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.216 -16.909 7.245 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C -0.144 4.144 3 C 0.085 3.915 4 N -0.150 5.150 5 C -0.489 4.489 6 H 0.094 0.906 7 C -0.189 4.189 8 N -0.484 5.484 9 Si 0.803 3.197 10 H -0.193 1.193 11 H -0.195 1.195 12 H -0.202 1.202 13 C 0.256 3.744 14 O -0.523 6.523 15 C -0.130 4.130 16 C -0.087 4.087 17 C -0.151 4.151 18 C -0.190 4.190 19 S 0.127 5.873 20 C -0.209 4.209 21 C -0.213 4.213 22 C -0.189 4.189 23 C -0.125 4.125 24 C -0.113 4.113 25 H 0.251 0.749 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.143 0.857 30 H 0.172 0.828 31 H 0.118 0.882 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.169 0.831 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.701 -17.603 7.214 20.170 hybrid contribution 0.260 2.611 -0.529 2.677 sum 6.961 -14.992 6.684 17.830 Atomic orbital electron populations 1.25126 0.96292 1.02161 1.02995 1.23076 0.94594 0.98526 0.98185 1.19254 0.85252 0.89285 0.97741 1.43849 1.46907 1.06565 1.17675 1.19490 1.50755 0.83933 0.94759 0.90630 1.25982 0.94018 1.02710 0.96150 1.70248 1.29971 1.36958 1.11253 0.85160 0.78734 0.78027 0.77744 1.19338 1.19504 1.20216 1.18463 0.84068 0.89199 0.82713 1.90564 1.60974 1.45879 1.54866 1.20049 0.97363 0.92625 1.02970 1.20850 0.95007 0.97287 0.95559 1.21053 1.00150 0.91452 1.02409 1.22107 0.97208 0.98017 1.01630 1.85382 1.28448 1.04897 1.68566 1.23560 0.94772 1.02923 0.99649 1.22193 1.03533 0.99984 0.95554 1.21635 1.01809 0.92408 1.03005 1.20629 0.96190 0.96397 0.99283 1.21282 0.99317 0.92527 0.98201 0.74887 0.88874 0.87206 0.91234 0.85658 0.82761 0.88215 0.93174 0.91073 0.89639 0.91397 0.88832 0.91461 0.83092 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.16 19.25 74.32 1.43 -8.73 16 2 C -0.14 -6.53 9.83 31.13 0.31 -6.22 16 3 C 0.21 9.57 4.80 84.57 0.41 9.98 16 4 N -0.43 -23.35 2.70 -649.21 -1.75 -25.10 16 5 C -0.36 -21.06 9.09 84.09 0.76 -20.29 16 6 H 0.08 4.77 7.38 -2.91 -0.02 4.75 16 7 C 0.02 0.91 5.24 84.95 0.44 1.36 16 8 N -0.85 -43.39 8.59 21.68 0.19 -43.21 16 9 Si 0.98 42.35 29.64 68.60 2.03 44.38 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 12 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 13 C 0.46 24.53 7.26 86.65 0.63 25.16 16 14 O -0.63 -38.19 16.56 -4.16 -0.07 -38.26 16 15 C -0.12 -5.18 5.36 -20.07 -0.11 -5.28 16 16 C -0.07 -2.34 9.59 22.29 0.21 -2.13 16 17 C -0.13 -3.49 7.95 22.15 0.18 -3.32 16 18 C -0.08 -2.04 6.00 22.79 0.14 -1.91 16 19 S -0.12 -2.42 21.30 -56.49 -1.20 -3.62 16 20 C -0.08 -1.18 2.60 30.60 0.08 -1.10 16 21 C -0.15 -2.20 8.69 71.98 0.63 -1.58 16 22 C -0.13 -1.33 9.20 71.98 0.66 -0.67 16 23 C -0.10 -2.96 9.73 22.14 0.22 -2.74 16 24 C -0.09 -3.32 7.27 22.29 0.16 -3.16 16 25 H 0.23 7.43 7.80 -4.41 -0.03 7.39 16 26 H 0.09 4.57 6.37 -2.39 -0.02 4.56 16 27 H 0.11 4.45 3.75 -2.39 -0.01 4.44 16 28 H 0.28 13.22 8.31 -92.71 -0.77 12.45 16 29 H 0.13 4.47 8.06 -2.91 -0.02 4.44 16 30 H 0.15 3.26 4.92 -2.91 -0.01 3.24 16 31 H 0.10 1.41 6.89 -2.39 -0.02 1.39 16 32 H 0.05 0.92 6.01 -2.39 -0.01 0.90 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 39 H 0.13 4.98 4.97 -2.91 -0.01 4.96 16 Total: -1.00 -69.31 335.22 6.41 -62.91 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 1.07 Total: 23.53 kcal Atomic # 6 Polarization: -26.77 SS G_CDS: 6.15 Total: -20.62 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -1.56 Total: -68.31 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.07 Total: -38.26 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: -2.42 SS G_CDS: -1.20 Total: -3.62 kcal Total: -69.31 6.41 -62.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281023708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.495 kcal (2) G-P(sol) polarization free energy of solvation -69.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds