Wall clock time and date at job start Tue Mar 31 2020 08:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42895 * 114.00111 * 2 1 4 4 C 1.50700 * 109.47272 * 179.97438 * 3 2 1 5 5 C 1.33391 * 122.53664 * 269.97254 * 4 3 2 6 6 S 1.75887 * 109.58714 * 179.77732 * 5 4 3 7 7 C 1.75880 * 90.97291 * 0.31797 * 6 5 4 8 8 C 1.50696 * 125.20205 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.47343 * 269.69107 * 8 7 6 10 10 C 1.38854 * 120.00629 * 179.97438 * 9 8 7 11 11 C 1.39566 * 119.84597 * 179.97438 * 10 9 8 12 12 C 1.36338 * 120.16116 * 180.25508 * 11 10 9 13 13 C 1.40893 * 119.83636 * 359.50729 * 12 11 10 14 14 C 1.41133 * 120.15364 * 180.25178 * 13 12 11 15 15 H 1.07994 * 120.00344 * 24.83920 * 14 13 12 16 16 C 1.39866 * 119.99916 * 204.83980 * 14 13 12 17 17 N 1.30910 * 119.99864 * 17.95871 * 16 14 13 18 18 Si 1.86802 * 120.00165 * 197.96719 * 16 14 13 19 19 H 1.48492 * 109.47275 * 59.99742 * 18 16 14 20 20 H 1.48502 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46916 * 299.99642 * 18 16 14 22 22 C 1.40883 * 119.68755 * 0.47142 * 13 12 11 23 23 C 1.36338 * 119.83541 * 359.77859 * 22 13 12 24 24 C 1.33385 * 109.59598 * 359.68349 * 7 6 5 25 25 H 1.09003 * 109.47227 * 60.00412 * 1 2 3 26 26 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47516 * 300.00492 * 1 2 3 28 28 H 1.09004 * 109.47612 * 59.99287 * 3 2 1 29 29 H 1.09003 * 109.46854 * 299.99794 * 3 2 1 30 30 H 1.07989 * 125.20319 * 0.06117 * 5 4 3 31 31 H 1.09007 * 109.47283 * 149.69133 * 8 7 6 32 32 H 1.09002 * 109.47280 * 29.69296 * 8 7 6 33 33 H 0.97005 * 119.99646 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.91752 * 359.97438 * 11 10 9 35 35 H 1.07995 * 120.08351 * 179.74617 * 12 11 10 36 36 H 0.97001 * 120.00040 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.07962 * 179.76054 * 22 13 12 38 38 H 1.08005 * 119.92015 * 179.97438 * 23 22 13 39 39 H 1.07996 * 122.54236 * 180.26627 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2273 1.1305 1.1255 6 16 5.9357 0.9885 0.7321 7 6 5.5731 1.0235 -0.9886 8 6 6.5946 0.9415 -2.0935 9 7 7.0349 2.2918 -2.4528 10 6 7.9807 2.4705 -3.4535 11 6 8.3974 3.7584 -3.7935 12 6 9.3219 3.9416 -4.7787 13 6 9.8645 2.8262 -5.4469 14 6 10.8258 3.0078 -6.4641 15 1 11.4385 3.8971 -6.4756 16 6 10.9851 2.0361 -7.4574 17 7 10.0433 1.1506 -7.6637 18 14 12.5419 2.0016 -8.4893 19 1 13.7181 1.8062 -7.6044 20 1 12.4650 0.8837 -9.4639 21 1 12.6800 3.2871 -9.2198 22 6 9.4395 1.5291 -5.0982 23 6 8.5105 1.3613 -4.1145 24 6 4.2552 1.1274 -1.1660 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.6886 1.8465 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 3.8191 1.1625 2.1247 31 1 6.1498 0.4606 -2.9647 32 1 7.4508 0.3584 -1.7542 33 1 6.6662 3.0611 -1.9910 34 1 7.9831 4.6122 -3.2780 35 1 9.6403 4.9390 -5.0435 36 1 10.1536 0.4768 -8.3528 37 1 9.8484 0.6699 -5.6090 38 1 8.1834 0.3675 -3.8463 39 1 3.8019 1.1624 -2.1456 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594920607.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:25:30 Heat of formation + Delta-G solvation = 11.592028 kcal Electronic energy + Delta-G solvation = -20569.200637 eV Core-core repulsion = 17375.240980 eV Total energy + Delta-G solvation = -3193.959657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.08404 -38.01181 -37.21325 -35.10772 -33.13443 -31.00018 -29.45176 -28.67790 -27.82417 -26.02020 -25.84252 -23.90479 -21.97124 -20.85084 -19.92904 -19.12417 -17.48906 -17.19289 -16.69738 -16.31223 -15.77209 -15.54526 -15.04876 -14.82030 -14.32307 -13.83075 -13.52714 -13.10836 -13.05235 -12.80657 -12.51288 -12.47409 -12.11760 -12.06997 -11.78352 -11.61108 -11.54263 -11.17298 -11.00043 -10.86770 -10.75690 -10.45174 -10.00626 -9.70822 -9.30512 -9.22112 -8.79405 -8.56276 -8.51282 -7.48611 -6.63365 -6.39190 -4.02593 0.81987 1.51514 1.88713 2.39770 2.93932 3.11173 3.15272 3.18524 3.36886 3.76856 4.06416 4.43782 4.63720 4.73754 4.77594 4.92968 4.99014 5.06281 5.11261 5.18782 5.34566 5.50014 5.57441 5.83641 5.89103 6.10638 6.21141 6.28461 6.32081 6.37158 6.81946 6.91246 6.94672 7.20963 7.36789 7.54923 7.69851 7.84703 8.16033 8.29001 8.48572 8.69557 8.80129 9.07026 9.15992 10.38469 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.028746 B = 0.002435 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.810141 B =11496.622937 C =11864.782674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.123 3.877 4 C -0.108 4.108 5 C -0.198 4.198 6 S 0.121 5.879 7 C -0.181 4.181 8 C 0.209 3.791 9 N -0.757 5.757 10 C 0.091 3.909 11 C -0.156 4.156 12 C -0.187 4.187 13 C 0.075 3.925 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.807 5.807 18 Si 0.903 3.097 19 H -0.266 1.266 20 H -0.281 1.281 21 H -0.268 1.268 22 C -0.125 4.125 23 C -0.164 4.164 24 C -0.111 4.111 25 H 0.042 0.958 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.163 0.837 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.386 0.614 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.277 0.723 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.700 -2.069 14.975 21.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.044 3.956 4 C -0.121 4.121 5 C -0.335 4.335 6 S 0.387 5.613 7 C -0.299 4.299 8 C 0.082 3.918 9 N -0.394 5.394 10 C -0.006 4.006 11 C -0.178 4.178 12 C -0.207 4.207 13 C 0.072 3.928 14 C -0.498 4.498 15 H 0.090 0.910 16 C -0.141 4.141 17 N -0.435 5.435 18 Si 0.728 3.272 19 H -0.191 1.191 20 H -0.206 1.206 21 H -0.193 1.193 22 C -0.144 4.144 23 C -0.186 4.186 24 C -0.142 4.142 25 H 0.061 0.939 26 H 0.105 0.895 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.181 0.819 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.218 0.782 34 H 0.104 0.896 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.106 0.894 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.271 -2.751 15.648 20.702 hybrid contribution -1.085 0.534 -1.157 1.674 sum -14.356 -2.217 14.491 20.518 Atomic orbital electron populations 1.22758 0.81015 1.02872 0.99987 1.87985 1.19526 1.27536 1.95393 1.21018 0.88748 0.84964 1.00864 1.18549 0.95240 1.05827 0.92458 1.25550 0.96707 1.08987 1.02207 1.84392 1.05288 1.71340 1.00324 1.24637 0.98014 1.09798 0.97441 1.19397 0.92983 0.87190 0.92207 1.43865 1.48343 1.04540 1.42641 1.17322 0.95604 0.93748 0.93907 1.19796 1.02742 0.93375 1.01926 1.20547 1.01397 0.97363 1.01395 1.17500 0.92289 0.90741 0.92276 1.19332 1.17723 1.04800 1.07958 0.90972 1.25802 0.96584 0.94596 0.97092 1.69849 1.30697 1.14463 1.28445 0.86458 0.82824 0.78459 0.79412 1.19088 1.20595 1.19276 1.20934 0.98844 0.97984 0.96686 1.20093 1.02591 0.95052 1.00836 1.19995 0.92337 1.02487 0.99369 0.93923 0.89543 0.94122 0.92503 0.92157 0.81936 0.91430 0.92384 0.78171 0.89597 0.89025 0.91258 0.86345 0.89404 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.11 10.69 -35.23 -0.38 -4.49 16 3 C 0.12 1.15 6.19 36.01 0.22 1.37 16 4 C -0.11 -1.21 5.43 -106.25 -0.58 -1.79 16 5 C -0.20 -2.07 10.98 29.04 0.32 -1.75 16 6 S 0.12 1.40 23.33 -107.50 -2.51 -1.11 16 7 C -0.18 -2.40 5.88 -36.01 -0.21 -2.61 16 8 C 0.21 3.23 5.38 -5.20 -0.03 3.20 16 9 N -0.76 -13.39 5.69 -59.67 -0.34 -13.73 16 10 C 0.09 1.99 6.67 -83.69 -0.56 1.43 16 11 C -0.16 -3.53 9.82 -39.77 -0.39 -3.93 16 12 C -0.19 -4.66 9.74 -39.26 -0.38 -5.04 16 13 C 0.07 2.04 5.57 -106.79 -0.60 1.44 16 14 C -0.47 -12.75 9.03 -37.88 -0.34 -13.09 16 15 H 0.07 1.90 7.91 -52.49 -0.41 1.48 16 16 C 0.07 1.93 5.13 -17.34 -0.09 1.85 16 17 N -0.81 -21.54 10.96 55.54 0.61 -20.93 16 18 Si 0.90 19.34 29.60 -169.99 -5.03 14.31 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 21 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 22 C -0.12 -3.28 8.64 -39.27 -0.34 -3.62 16 23 C -0.16 -3.85 9.23 -39.77 -0.37 -4.22 16 24 C -0.11 -1.39 9.85 -41.21 -0.41 -1.79 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.43 8.12 -51.93 -0.42 0.01 16 29 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 30 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 32 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 33 H 0.39 6.27 8.46 -40.82 -0.35 5.93 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 36 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 37 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 38 H 0.09 1.88 6.68 -52.48 -0.35 1.52 16 39 H 0.14 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -29.23 346.39 -10.25 -39.48 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.20 Total: 8.49 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -2.63 Total: -27.23 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.27 Total: -34.66 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.38 Total: -4.49 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.51 Total: -1.11 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.23 -10.25 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594920607.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.071 kcal (2) G-P(sol) polarization free energy of solvation -29.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds