Wall clock time and date at job start Tue Mar 31 2020 08:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47193 * 2 1 4 4 C 1.50708 * 109.46897 * 119.99770 * 2 1 3 5 5 H 1.08002 * 119.99456 * 120.00269 * 4 2 1 6 6 C 1.37865 * 119.99847 * 299.99623 * 4 2 1 7 7 N 1.31521 * 120.00587 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00018 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47192 * 60.00045 * 8 6 4 10 10 H 1.48503 * 109.47532 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47276 * 300.00120 * 8 6 4 12 12 C 1.50700 * 109.47125 * 239.99435 * 2 1 3 13 13 O 1.21291 * 120.00237 * 240.00357 * 12 2 1 14 14 N 1.34777 * 119.99699 * 60.00024 * 12 2 1 15 15 C 1.40138 * 119.99657 * 175.53570 * 14 12 2 16 16 C 1.38498 * 120.03072 * 34.67985 * 15 14 12 17 17 C 1.39289 * 119.86458 * 179.72762 * 16 15 14 18 18 C 1.48440 * 120.03603 * 180.29587 * 17 16 15 19 19 N 1.34054 * 126.67487 * 359.93149 * 18 17 16 20 20 N 1.28987 * 107.26624 * 179.83822 * 19 18 17 21 21 N 1.28733 * 108.94390 * 0.42836 * 20 19 18 22 22 H 0.97006 * 125.33540 * 179.74793 * 21 20 19 23 23 N 1.28865 * 109.32111 * 359.72466 * 21 20 19 24 24 C 1.39349 * 119.92915 * 0.53245 * 17 16 15 25 25 C 1.38013 * 120.05789 * 359.73356 * 24 17 16 26 26 C 1.38645 * 120.13686 * 359.97438 * 25 24 17 27 27 O 1.35943 * 119.96477 * 179.97438 * 26 25 24 28 28 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47233 * 60.00571 * 1 2 3 30 30 H 1.09000 * 109.47055 * 300.00590 * 1 2 3 31 31 H 0.96994 * 120.00397 * 179.97438 * 7 6 4 32 32 H 0.96996 * 120.00643 * 355.54217 * 14 12 2 33 33 H 1.08001 * 120.06759 * 359.96278 * 16 15 14 34 34 H 1.07994 * 119.96974 * 179.75291 * 24 17 16 35 35 H 1.07998 * 119.92624 * 180.02562 * 25 24 17 36 36 H 0.96706 * 114.00209 * 270.02235 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3224 -1.1193 4.0080 9 1 3.8074 -1.1188 4.0078 10 1 1.8269 -0.4197 5.2205 11 1 1.8279 -2.5196 4.0083 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6967 -1.1191 14 7 1.7067 -0.2501 -2.4545 15 6 2.2490 -0.8536 -3.5971 16 6 2.4851 -2.2182 -3.6145 17 6 3.0190 -2.8153 -4.7540 18 6 3.2674 -4.2786 -4.7791 19 7 3.0306 -5.1480 -3.7866 20 7 3.3788 -6.3158 -4.2095 21 7 3.8274 -6.2085 -5.4113 22 1 4.1574 -6.9413 -5.9546 23 7 3.7690 -4.9750 -5.7797 24 6 3.3242 -2.0368 -5.8688 25 6 3.0928 -0.6764 -5.8462 26 6 2.5559 -0.0803 -4.7154 27 8 2.3299 1.2601 -4.6968 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5139 0.8899 31 1 0.7082 1.1611 3.4843 32 1 1.0971 0.4989 -2.5447 33 1 2.2522 -2.8187 -2.7476 34 1 3.7419 -2.4985 -6.7512 35 1 3.3298 -0.0752 -6.7115 36 1 3.0787 1.7808 -4.3752 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589787708.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:20 Heat of formation + Delta-G solvation = 72.627427 kcal Electronic energy + Delta-G solvation = -23850.381925 eV Core-core repulsion = 20145.068499 eV Total energy + Delta-G solvation = -3705.313426 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.112 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -44.47854 -40.38117 -38.50362 -36.85611 -34.45653 -34.23402 -33.82770 -33.10542 -30.85571 -29.99222 -28.76241 -25.17883 -24.78545 -24.35138 -23.44226 -22.22892 -21.27528 -19.49363 -19.24358 -18.46291 -17.35775 -17.16865 -16.28083 -16.17271 -15.61998 -15.24265 -14.87410 -14.51392 -14.16814 -13.92997 -13.57030 -13.10977 -12.77996 -12.67812 -12.54756 -12.31222 -11.91689 -11.57805 -11.38667 -11.16484 -11.02265 -11.00508 -10.82124 -10.71499 -10.69513 -10.33227 -9.99700 -9.90335 -9.03278 -8.77126 -8.54705 -8.35586 -7.84988 -6.05552 -4.09377 0.61508 1.14741 1.37900 2.16511 2.27091 3.36711 3.39166 3.42892 3.43555 3.53795 3.73587 3.78289 4.18664 4.22314 4.46216 4.93197 5.11124 5.25187 5.28160 5.37513 5.50580 5.53376 5.84996 6.06381 6.16803 6.30295 6.34396 6.40806 6.57036 6.64048 6.77424 6.86413 7.06084 7.40896 7.60935 7.71064 7.89489 8.05095 8.12467 8.30362 8.97610 9.01611 9.56506 11.01939 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014371 B = 0.004190 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1947.863927 B = 6681.628634 C = 8328.287647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.057 0.943 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.516 3.484 13 O -0.518 6.518 14 N -0.682 5.682 15 C 0.140 3.860 16 C -0.070 4.070 17 C -0.014 4.014 18 C 0.228 3.772 19 N -0.256 5.256 20 N -0.051 5.051 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.299 5.299 24 C -0.092 4.092 25 C -0.130 4.130 26 C 0.089 3.911 27 O -0.493 6.493 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.096 0.904 31 H 0.262 0.738 32 H 0.413 0.587 33 H 0.161 0.839 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.966 -4.645 -19.352 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.074 0.926 4 C -0.542 4.542 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.201 1.201 12 C 0.308 3.692 13 O -0.391 6.391 14 N -0.329 5.329 15 C 0.043 3.957 16 C -0.093 4.093 17 C -0.019 4.019 18 C -0.052 4.052 19 N -0.129 5.129 20 N -0.047 5.047 21 N -0.078 5.078 22 H 0.327 0.673 23 N -0.151 5.151 24 C -0.113 4.113 25 C -0.149 4.149 26 C 0.041 3.959 27 O -0.304 6.304 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.250 0.750 33 H 0.179 0.821 34 H 0.152 0.848 35 H 0.154 0.846 36 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 3.833 -5.992 -18.953 20.244 hybrid contribution 0.699 0.091 0.386 0.804 sum 4.532 -5.901 -18.567 20.002 Atomic orbital electron populations 1.21785 0.96238 1.00141 1.01201 1.18900 0.94333 0.96893 0.88618 0.92583 1.21085 1.31332 1.12973 0.88850 0.90660 1.24929 0.95002 0.95013 0.99124 1.69854 1.36882 1.23018 1.23775 0.86492 0.79283 0.79785 0.81521 1.20179 1.21369 1.20093 1.22407 0.78328 0.84433 0.84073 1.90565 1.36859 1.25581 1.86124 1.44095 1.48126 1.36565 1.04080 1.18109 0.98599 0.91583 0.87401 1.21385 0.96851 0.93109 0.97936 1.17077 1.04264 0.84945 0.95564 1.23638 0.98767 0.96608 0.86187 1.76252 1.18002 0.94455 1.24143 1.78967 1.10809 1.18927 0.95957 1.47720 1.41137 1.07567 1.11386 0.67298 1.74871 1.22206 0.91652 1.26353 1.20877 1.00032 0.92950 0.97458 1.21040 1.00749 0.94824 0.98280 1.18374 1.00447 0.83694 0.93409 1.84787 1.43288 1.14219 1.88058 0.94715 0.96780 0.88557 0.92821 0.74984 0.82139 0.84822 0.84583 0.75243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.86 37.16 0.33 -2.71 16 2 C 0.03 0.81 2.65 -92.92 -0.25 0.56 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.50 -13.99 8.37 -34.44 -0.29 -14.28 16 5 H 0.08 2.21 6.75 -52.49 -0.35 1.85 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -24.73 11.32 55.43 0.63 -24.10 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.52 11.37 6.99 -10.99 -0.08 11.29 16 13 O -0.52 -12.91 12.88 5.55 0.07 -12.84 16 14 N -0.68 -11.88 5.11 -9.78 -0.05 -11.93 16 15 C 0.14 2.27 6.32 -83.54 -0.53 1.74 16 16 C -0.07 -1.21 8.35 -39.09 -0.33 -1.54 16 17 C -0.01 -0.21 5.88 -104.89 -0.62 -0.83 16 18 C 0.23 3.37 7.93 -156.30 -1.24 2.13 16 19 N -0.26 -4.20 12.23 32.15 0.39 -3.81 16 20 N -0.05 -0.68 13.47 60.35 0.81 0.13 16 21 N -0.23 -2.22 7.90 60.35 0.48 -1.74 16 22 H 0.47 1.93 8.96 -340.36 -3.05 -1.12 16 23 N -0.30 -3.55 12.07 32.17 0.39 -3.17 16 24 C -0.09 -1.09 9.69 -39.25 -0.38 -1.47 16 25 C -0.13 -1.45 9.96 -39.51 -0.39 -1.85 16 26 C 0.09 1.17 6.72 -39.01 -0.26 0.91 16 27 O -0.49 -5.59 13.05 -19.56 -0.26 -5.85 16 28 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.01 0.25 7.47 -51.93 -0.39 -0.14 16 30 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.41 6.32 7.86 -40.82 -0.32 6.00 16 33 H 0.16 3.26 6.01 -52.49 -0.32 2.94 16 34 H 0.13 1.30 7.87 -52.49 -0.41 0.88 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.39 2.95 9.06 45.56 0.41 3.36 16 LS Contribution 318.63 15.07 4.80 4.80 Total: -1.00 -33.67 318.63 -7.03 -40.69 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.15 Total: 5.62 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -4.12 Total: -4.48 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: 2.65 Total: -44.61 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.18 Total: -18.69 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.67 -7.03 -40.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589787708.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.318 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds