Wall clock time and date at job start Tue Mar 31 2020 07:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99604 * 2 1 4 4 H 1.48502 * 109.47108 * 269.99770 * 3 2 1 5 5 H 1.48492 * 109.47420 * 29.99574 * 3 2 1 6 6 H 1.48500 * 109.47184 * 150.00140 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99805 * 359.97438 * 7 2 1 9 9 C 1.50702 * 120.00375 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47235 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99851 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46877 * 179.97438 * 11 10 9 13 13 C 1.38254 * 120.00295 * 269.90818 * 12 11 10 14 14 C 1.38204 * 119.99840 * 179.97438 * 13 12 11 15 15 C 1.38262 * 120.00497 * 0.09078 * 14 13 12 16 16 C 1.38207 * 119.99568 * 359.97438 * 15 14 13 17 17 C 1.50701 * 119.99822 * 179.97438 * 16 15 14 18 18 O 1.42899 * 109.47103 * 269.97599 * 17 16 15 19 19 C 1.42903 * 114.00342 * 180.02562 * 18 17 16 20 20 C 1.52991 * 109.47131 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47308 * 60.00152 * 20 19 18 22 22 F 1.39904 * 109.47112 * 180.02562 * 20 19 18 23 23 F 1.39898 * 109.47429 * 299.99704 * 20 19 18 24 24 C 1.38220 * 119.99654 * 90.00316 * 12 11 10 25 25 H 0.97001 * 120.00518 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46783 * 59.99854 * 9 7 2 27 27 H 1.08997 * 109.46509 * 299.99792 * 9 7 2 28 28 H 1.00903 * 110.99759 * 303.95354 * 10 9 7 29 29 H 1.08997 * 109.47028 * 59.99796 * 11 10 9 30 30 H 1.08996 * 109.47091 * 299.99468 * 11 10 9 31 31 H 1.07997 * 119.99709 * 0.04961 * 13 12 11 32 32 H 1.08000 * 119.99746 * 180.02562 * 14 13 12 33 33 H 1.07991 * 120.00010 * 179.97438 * 15 14 13 34 34 H 1.08993 * 109.47341 * 29.98219 * 17 16 15 35 35 H 1.09001 * 109.46864 * 149.98303 * 17 16 15 36 36 H 1.08999 * 109.46858 * 300.00220 * 19 18 17 37 37 H 1.08994 * 109.46670 * 60.00004 * 19 18 17 38 38 H 1.08000 * 119.99660 * 0.27001 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5116 -1.1939 0.0011 10 7 4.0013 -2.5789 0.0010 11 6 5.4698 -2.6180 0.0009 12 6 5.9341 -4.0517 0.0015 13 6 6.1490 -4.7084 1.1990 14 6 6.5743 -6.0234 1.1993 15 6 6.7867 -6.6817 0.0022 16 6 6.5731 -6.0248 -1.1949 17 6 6.8052 -6.7421 -2.4998 18 8 8.1600 -6.5528 -2.9130 19 6 8.4866 -7.1955 -4.1469 20 6 9.9534 -6.9273 -4.4889 21 9 10.7695 -7.4312 -3.4704 22 9 10.2730 -7.5560 -5.6972 23 9 10.1591 -5.5490 -4.6124 24 6 6.1470 -4.7096 -1.1954 25 1 -0.4851 0.8400 -0.0004 26 1 3.8745 -0.6799 0.8911 27 1 3.8752 -0.6803 -0.8889 28 1 3.6255 -3.0953 0.7821 29 1 5.8467 -2.1140 0.8909 30 1 5.8466 -2.1140 -0.8890 31 1 5.9833 -4.1941 2.1341 32 1 6.7417 -6.5364 2.1348 33 1 7.1194 -7.7091 0.0026 34 1 6.6106 -7.8065 -2.3689 35 1 6.1343 -6.3407 -3.2593 36 1 8.3267 -8.2694 -4.0506 37 1 7.8505 -6.8032 -4.9403 38 1 5.9848 -4.1947 -2.1308 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519816632.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:49 Heat of formation + Delta-G solvation = -176.261140 kcal Electronic energy + Delta-G solvation = -23477.498348 eV Core-core repulsion = 19290.783156 eV Total energy + Delta-G solvation = -4186.715193 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.119 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.42631 -47.99360 -47.87036 -39.67481 -38.23712 -35.56299 -32.84509 -32.16184 -31.04630 -29.91311 -27.56761 -26.12225 -24.41291 -23.65182 -22.05457 -21.16387 -20.52330 -18.97757 -18.95268 -18.12836 -16.99386 -16.75050 -16.41807 -16.35153 -15.42209 -15.18198 -14.81229 -14.72030 -14.56658 -14.34290 -14.14049 -14.05388 -14.04948 -13.87174 -13.67826 -13.20812 -12.75432 -12.71070 -12.56553 -12.32103 -11.87629 -11.76546 -11.70170 -11.07774 -10.95901 -10.63574 -10.47446 -10.29728 -9.88944 -9.32854 -8.84149 -8.67416 -8.60687 -7.52100 -6.08160 -4.06539 1.20064 1.46006 2.15914 2.98909 3.27348 3.34631 3.36650 3.43757 3.60850 3.81559 4.13803 4.39849 4.52511 4.57167 4.67347 4.68025 4.91959 4.99274 5.07777 5.19939 5.24101 5.34261 5.52265 5.54306 5.75950 5.92655 6.11974 6.14186 6.37572 6.48166 6.51668 6.68968 6.78348 6.97822 7.02337 7.55888 7.83612 8.27221 8.61424 8.99625 9.53390 11.05049 Molecular weight = 303.12amu Principal moments of inertia in cm(-1) A = 0.019387 B = 0.002519 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.956892 B =11115.040234 C =11871.401063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.674 5.674 11 C 0.091 3.909 12 C -0.071 4.071 13 C -0.104 4.104 14 C -0.125 4.125 15 C -0.102 4.102 16 C -0.102 4.102 17 C 0.109 3.891 18 O -0.367 6.367 19 C 0.017 3.983 20 C 0.461 3.539 21 F -0.176 7.176 22 F -0.179 7.179 23 F -0.174 7.174 24 C -0.072 4.072 25 H 0.264 0.736 26 H -0.015 1.015 27 H 0.023 0.977 28 H 0.337 0.663 29 H 0.030 0.970 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.122 0.878 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.667 -17.543 -6.133 27.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.039 4.039 12 C -0.071 4.071 13 C -0.122 4.122 14 C -0.143 4.143 15 C -0.121 4.121 16 C -0.102 4.102 17 C 0.034 3.966 18 O -0.287 6.287 19 C -0.062 4.062 20 C 0.407 3.593 21 F -0.158 7.158 22 F -0.160 7.160 23 F -0.156 7.156 24 C -0.091 4.091 25 H 0.074 0.926 26 H 0.003 0.997 27 H 0.041 0.959 28 H 0.154 0.846 29 H 0.048 0.952 30 H 0.093 0.907 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 19.607 -17.345 -6.719 27.027 hybrid contribution 0.585 1.092 0.688 1.417 sum 20.192 -16.253 -6.031 26.613 Atomic orbital electron populations 1.69895 1.06170 1.26927 1.50888 1.24906 0.94760 0.98970 0.94697 0.86817 0.80242 0.83794 0.78629 1.20105 1.21188 1.19243 1.21044 0.88863 0.94837 1.50738 0.90285 1.20029 0.96718 0.84817 0.94870 1.60545 1.03413 1.16849 1.49691 1.20937 0.91145 0.91007 1.00772 1.19972 0.97712 0.96626 0.92814 1.21161 0.98494 0.94746 0.97836 1.21048 1.00588 0.94851 0.97786 1.20936 0.99513 0.99687 0.91949 1.19362 1.02745 0.94905 0.93224 1.21449 0.81588 0.99309 0.94287 1.88022 1.30126 1.74100 1.36415 1.23501 0.90715 1.00871 0.91121 1.20198 0.90078 0.74634 0.74400 1.93218 1.75720 1.87112 1.59734 1.93209 1.93942 1.82499 1.46365 1.93233 1.95979 1.30749 1.95619 1.20942 0.96800 0.93083 0.98282 0.92608 0.99730 0.95900 0.84587 0.95185 0.90734 0.86078 0.86041 0.86302 0.91712 0.91346 0.88617 0.88422 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.52 -14.76 9.87 -34.44 -0.34 -15.10 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.16 3.95 4.51 -4.98 -0.02 3.92 16 10 N -0.67 -13.87 6.48 -116.34 -0.75 -14.62 16 11 C 0.09 1.52 5.81 -4.97 -0.03 1.49 16 12 C -0.07 -1.04 5.39 -104.62 -0.56 -1.60 16 13 C -0.10 -1.35 9.70 -39.59 -0.38 -1.74 16 14 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 15 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 16 C -0.10 -1.21 5.51 -104.63 -0.58 -1.78 16 17 C 0.11 0.98 6.06 36.01 0.22 1.20 16 18 O -0.37 -3.66 10.21 -35.23 -0.36 -4.02 16 19 C 0.02 0.11 5.90 37.15 0.22 0.33 16 20 C 0.46 3.94 3.32 37.15 0.12 4.06 16 21 F -0.18 -1.77 17.26 2.25 0.04 -1.73 16 22 F -0.18 -1.44 17.32 2.25 0.04 -1.40 16 23 F -0.17 -1.85 17.26 2.25 0.04 -1.81 16 24 C -0.07 -0.99 9.36 -39.58 -0.37 -1.36 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H -0.01 -0.36 7.20 -51.93 -0.37 -0.73 16 27 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 28 H 0.34 6.77 8.72 -39.29 -0.34 6.43 16 29 H 0.03 0.49 8.08 -51.93 -0.42 0.07 16 30 H 0.07 1.23 8.09 -51.93 -0.42 0.81 16 31 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 342.06 15.07 5.15 5.15 Total: -1.00 -32.22 342.06 -7.26 -39.48 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.92 Total: 0.98 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.60 Total: -12.04 kcal Atomic # 7 Polarization: -41.48 SS G_CDS: 0.02 Total: -41.46 kcal Atomic # 8 Polarization: -3.66 SS G_CDS: -0.36 Total: -4.02 kcal Atomic # 9 Polarization: -5.05 SS G_CDS: 0.12 Total: -4.93 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.22 -7.26 -39.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519816632.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.779 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds