Wall clock time and date at job start Tue Mar 31 2020 08:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30137 * 124.93811 * 2 1 4 4 C 1.35717 * 109.67998 * 179.97438 * 3 2 1 5 5 C 1.39911 * 133.41930 * 179.97438 * 4 3 2 6 6 C 1.36313 * 120.05324 * 179.72670 * 5 4 3 7 7 C 1.39920 * 120.54133 * 0.24997 * 6 5 4 8 8 C 1.48245 * 119.91079 * 179.97438 * 7 6 5 9 9 C 1.39849 * 119.53858 * 179.97438 * 8 7 6 10 10 C 1.37695 * 121.16656 * 180.02562 * 9 8 7 11 11 C 1.39590 * 120.19098 * 359.97438 * 10 9 8 12 12 C 1.43203 * 120.45360 * 180.02562 * 11 10 9 13 13 N 9.62756 * 139.81207 * 359.68351 * 4 1 2 14 14 C 1.46548 * 119.09603 * 0.02562 * 11 10 9 15 15 C 1.40848 * 120.55291 * 179.97438 * 14 11 10 16 16 H 1.07992 * 120.00035 * 329.51580 * 15 14 11 17 17 C 1.40231 * 119.99867 * 149.51388 * 15 14 11 18 18 N 1.30657 * 119.99918 * 162.31743 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 342.31147 * 17 15 14 20 20 H 1.48506 * 109.46928 * 95.43081 * 19 17 15 21 21 H 1.48501 * 109.47586 * 215.42509 * 19 17 15 22 22 H 1.48498 * 109.47538 * 335.42822 * 19 17 15 23 23 C 1.38658 * 119.53918 * 359.73396 * 8 7 6 24 24 C 1.39062 * 120.17455 * 0.02804 * 7 6 5 25 25 C 1.38571 * 119.58898 * 359.97438 * 24 7 6 26 26 N 1.36017 * 124.93747 * 180.61876 * 2 1 3 27 27 H 0.97007 * 126.36329 * 359.36547 * 26 2 1 28 28 H 1.09002 * 109.46687 * 89.98361 * 1 2 3 29 29 H 1.09006 * 109.47240 * 209.97938 * 1 2 3 30 30 H 1.08999 * 109.47183 * 329.97979 * 1 2 3 31 31 H 1.08004 * 119.97159 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.73233 * 180.27903 * 6 5 4 33 33 H 1.07997 * 119.41578 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.89977 * 180.02562 * 10 9 8 35 35 H 0.97002 * 120.00273 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.13512 * 0.02562 * 23 8 7 37 37 H 1.08001 * 120.19982 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0668 0.0000 4 6 3.5617 0.7097 0.0006 5 6 4.7569 1.4370 0.0004 6 6 5.9534 0.7840 0.0067 7 6 6.0002 -0.6144 0.0083 8 6 7.3092 -1.3102 0.0147 9 6 7.3469 -2.7082 0.0167 10 6 8.5439 -3.3888 0.0231 11 6 9.7505 -2.6869 0.0272 12 6 10.9986 -3.3889 0.0333 13 7 11.9887 -3.9459 0.0311 14 6 9.7225 -1.2216 0.0251 15 6 10.9216 -0.4827 0.0297 16 1 11.8019 -0.8849 0.5087 17 6 10.9722 0.7753 -0.5879 18 7 11.9403 1.6049 -0.3019 19 14 9.6559 1.2648 -1.8195 20 1 8.6003 2.0496 -1.1301 21 1 10.2648 2.0906 -2.8931 22 1 9.0559 0.0437 -2.4145 23 6 8.4790 -0.5659 0.0135 24 6 4.8221 -1.3532 0.0027 25 6 3.6022 -0.6959 -0.0038 26 7 2.2860 -1.1150 -0.0120 27 1 1.9750 -2.0338 -0.0133 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.7314 2.5167 0.0000 32 1 6.8728 1.3506 0.0111 33 1 6.4208 -3.2638 0.0140 34 1 8.5491 -4.4688 0.0242 35 1 11.9755 2.4750 -0.7293 36 1 8.4351 0.5132 0.0083 37 1 4.8578 -2.4327 0.0035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243963708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:57 Heat of formation + Delta-G solvation = 107.015501 kcal Electronic energy + Delta-G solvation = -22514.087056 eV Core-core repulsion = 19221.114071 eV Total energy + Delta-G solvation = -3292.972984 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.107 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.06847 -38.64377 -36.91289 -35.16520 -34.07436 -33.15092 -31.93568 -31.04453 -30.39632 -29.37486 -26.95717 -25.72627 -23.27508 -22.53531 -21.20849 -20.94458 -20.58330 -17.98349 -17.72476 -17.56902 -16.81933 -15.54231 -15.53369 -15.05419 -14.52612 -14.05454 -13.93621 -13.72798 -13.32640 -13.28864 -13.09561 -12.97387 -12.77708 -12.61693 -12.26466 -12.03925 -11.74505 -11.69094 -11.38058 -11.30392 -11.09172 -10.94947 -10.69235 -10.39986 -10.17351 -10.03404 -9.81267 -9.42914 -8.55918 -8.23420 -7.97936 -7.31706 -7.21007 -4.85628 0.79166 1.55723 2.02806 2.43707 2.80075 2.82109 2.92407 3.03555 3.13979 3.70821 3.80317 3.80949 4.05162 4.27751 4.38100 4.58516 4.93454 5.06533 5.12917 5.14886 5.18853 5.26360 5.43467 5.46809 5.52371 5.58820 5.71989 5.82176 6.02556 6.22837 6.34239 6.38366 6.48319 6.58938 6.69814 6.86403 6.94761 6.99608 7.25049 7.29702 7.34744 7.53662 7.69279 7.88046 7.96032 8.23066 8.36719 8.69877 9.67840 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.004129 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.394942 B = 6779.450475 C = 8084.166949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.270 3.730 3 N -0.493 5.493 4 C 0.039 3.961 5 C -0.067 4.067 6 C -0.118 4.118 7 C -0.008 4.008 8 C 0.012 3.988 9 C -0.241 4.241 10 C -0.016 4.016 11 C -0.166 4.166 12 C 0.296 3.704 13 N -0.497 5.497 14 C 0.126 3.874 15 C -0.414 4.414 16 H 0.098 0.902 17 C 0.083 3.917 18 N -0.774 5.774 19 Si 0.905 3.095 20 H -0.259 1.259 21 H -0.283 1.283 22 H -0.235 1.235 23 C -0.213 4.213 24 C -0.109 4.109 25 C 0.050 3.950 26 N -0.601 5.601 27 H 0.420 0.580 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.294 0.706 36 H 0.114 0.886 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.600 -0.718 -0.891 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.003 3.997 3 N -0.214 5.214 4 C -0.078 4.078 5 C -0.086 4.086 6 C -0.138 4.138 7 C -0.009 4.009 8 C 0.011 3.989 9 C -0.260 4.260 10 C -0.037 4.037 11 C -0.172 4.172 12 C -0.015 4.015 13 N -0.175 5.175 14 C 0.120 3.880 15 C -0.441 4.441 16 H 0.116 0.884 17 C -0.142 4.142 18 N -0.395 5.395 19 Si 0.729 3.271 20 H -0.184 1.184 21 H -0.210 1.210 22 H -0.157 1.157 23 C -0.232 4.232 24 C -0.130 4.130 25 C -0.058 4.058 26 N -0.214 5.214 27 H 0.258 0.742 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -19.101 -0.436 -0.903 19.128 hybrid contribution -0.586 -0.655 -0.435 0.981 sum -19.688 -1.091 -1.339 19.763 Atomic orbital electron populations 1.20324 0.84500 1.04461 1.03987 1.23516 0.95507 0.81230 0.99460 1.70324 1.01176 1.27635 1.22263 1.19051 0.91741 0.90444 1.06598 1.19905 0.88922 0.99639 1.00144 1.20988 0.97893 0.93935 1.00964 1.18795 0.92203 0.92578 0.97361 1.18330 0.90180 0.93019 0.97401 1.20136 0.96388 0.92491 1.16970 1.20489 0.91072 0.97664 0.94468 1.16921 0.85759 0.91564 1.22926 1.25689 0.92583 0.91637 0.91566 1.81042 1.10962 1.11327 1.14206 1.18364 0.92469 0.89176 0.88001 1.19670 0.97700 0.98824 1.27865 0.88385 1.26377 0.96582 0.94611 0.96583 1.69589 1.29549 1.06897 1.33492 0.86400 0.79978 0.80808 0.79873 1.18446 1.20968 1.15730 1.21069 0.91331 0.98282 1.12470 1.20017 0.88083 0.99660 1.05228 1.18764 0.85138 0.95265 1.06679 1.42970 1.04939 1.09597 1.63892 0.74174 0.89618 0.90391 0.88718 0.85406 0.84713 0.87721 0.87606 0.89470 0.86834 0.85291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.51 36.01 0.38 -0.06 16 2 C 0.27 2.98 8.08 -154.82 -1.25 1.73 16 3 N -0.49 -7.30 11.27 -8.18 -0.09 -7.39 16 4 C 0.04 0.62 7.23 -84.62 -0.61 0.01 16 5 C -0.07 -1.04 10.03 -39.65 -0.40 -1.43 16 6 C -0.12 -1.95 9.33 -39.65 -0.37 -2.32 16 7 C -0.01 -0.13 5.88 -104.85 -0.62 -0.75 16 8 C 0.01 0.22 5.86 -105.03 -0.62 -0.40 16 9 C -0.24 -4.22 9.36 -39.18 -0.37 -4.59 16 10 C -0.02 -0.30 9.74 -39.28 -0.38 -0.68 16 11 C -0.17 -3.59 5.95 -104.12 -0.62 -4.21 16 12 C 0.30 6.73 14.36 -22.47 -0.32 6.41 16 13 N -0.50 -11.80 18.54 41.84 0.78 -11.03 16 14 C 0.13 2.88 5.26 -104.68 -0.55 2.33 16 15 C -0.41 -10.31 9.02 -37.85 -0.34 -10.65 16 16 H 0.10 2.67 7.67 -52.49 -0.40 2.26 16 17 C 0.08 1.96 5.42 -17.30 -0.09 1.87 16 18 N -0.77 -18.85 13.92 55.56 0.77 -18.08 16 19 Si 0.91 18.45 24.53 -169.99 -4.17 14.28 16 20 H -0.26 -4.85 6.03 56.52 0.34 -4.51 16 21 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 22 H -0.23 -4.91 6.84 56.52 0.39 -4.52 16 23 C -0.21 -4.45 6.52 -38.54 -0.25 -4.70 16 24 C -0.11 -1.60 9.43 -39.15 -0.37 -1.97 16 25 C 0.05 0.72 7.29 -84.00 -0.61 0.11 16 26 N -0.60 -6.37 6.24 -8.01 -0.05 -6.42 16 27 H 0.42 2.84 8.96 -40.82 -0.37 2.47 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.13 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.14 2.23 5.40 -52.49 -0.28 1.95 16 33 H 0.10 1.53 6.08 -52.49 -0.32 1.21 16 34 H 0.11 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 36 H 0.11 2.32 2.89 -52.49 -0.15 2.17 16 37 H 0.13 1.62 6.11 -52.49 -0.32 1.30 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -28.94 319.68 -8.51 -37.45 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -3.17 Total: 5.68 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -7.39 Total: -19.30 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 1.41 Total: -42.92 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -4.17 Total: 14.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.94 -8.51 -37.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243963708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.463 kcal (2) G-P(sol) polarization free energy of solvation -28.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds