Wall clock time and date at job start Tue Mar 31 2020 08:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30137 * 124.93811 * 2 1 4 4 C 1.35717 * 109.67998 * 179.97438 * 3 2 1 5 5 C 1.39911 * 133.41930 * 179.97438 * 4 3 2 6 6 C 1.36313 * 120.05324 * 179.72670 * 5 4 3 7 7 C 1.39920 * 120.54133 * 0.24997 * 6 5 4 8 8 C 1.48245 * 119.91079 * 179.97438 * 7 6 5 9 9 C 1.39849 * 119.53858 * 179.97438 * 8 7 6 10 10 C 1.37695 * 121.16656 * 180.02562 * 9 8 7 11 11 C 1.39590 * 120.19098 * 359.97438 * 10 9 8 12 12 C 1.43203 * 120.45360 * 180.02562 * 11 10 9 13 13 N 9.62756 * 139.81207 * 359.68351 * 4 1 2 14 14 C 1.46548 * 119.09603 * 0.02562 * 11 10 9 15 15 C 1.40848 * 120.55291 * 179.97438 * 14 11 10 16 16 H 1.07992 * 120.00035 * 329.51580 * 15 14 11 17 17 C 1.40231 * 119.99867 * 149.51388 * 15 14 11 18 18 N 1.30657 * 119.99918 * 162.31743 * 17 15 14 19 19 Si 1.86796 * 119.99990 * 342.31147 * 17 15 14 20 20 H 1.48506 * 109.46928 * 95.43081 * 19 17 15 21 21 H 1.48501 * 109.47586 * 215.42509 * 19 17 15 22 22 H 1.48498 * 109.47538 * 335.42822 * 19 17 15 23 23 C 1.38658 * 119.53918 * 359.73396 * 8 7 6 24 24 C 1.39062 * 120.17455 * 0.02804 * 7 6 5 25 25 C 1.38571 * 119.58898 * 359.97438 * 24 7 6 26 26 N 1.36017 * 124.93747 * 180.61876 * 2 1 3 27 27 H 0.97007 * 126.36329 * 359.36547 * 26 2 1 28 28 H 1.09002 * 109.46687 * 89.98361 * 1 2 3 29 29 H 1.09006 * 109.47240 * 209.97938 * 1 2 3 30 30 H 1.08999 * 109.47183 * 329.97979 * 1 2 3 31 31 H 1.08004 * 119.97159 * 0.02562 * 5 4 3 32 32 H 1.08001 * 119.73233 * 180.27903 * 6 5 4 33 33 H 1.07997 * 119.41578 * 359.97438 * 9 8 7 34 34 H 1.08005 * 119.89977 * 180.02562 * 10 9 8 35 35 H 0.97002 * 120.00273 * 179.97438 * 18 17 15 36 36 H 1.08001 * 120.13512 * 0.02562 * 23 8 7 37 37 H 1.08001 * 120.19982 * 179.97438 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0668 0.0000 4 6 3.5617 0.7097 0.0006 5 6 4.7569 1.4370 0.0004 6 6 5.9534 0.7840 0.0067 7 6 6.0002 -0.6144 0.0083 8 6 7.3092 -1.3102 0.0147 9 6 7.3469 -2.7082 0.0167 10 6 8.5439 -3.3888 0.0231 11 6 9.7505 -2.6869 0.0272 12 6 10.9986 -3.3889 0.0333 13 7 11.9887 -3.9459 0.0311 14 6 9.7225 -1.2216 0.0251 15 6 10.9216 -0.4827 0.0297 16 1 11.8019 -0.8849 0.5087 17 6 10.9722 0.7753 -0.5879 18 7 11.9403 1.6049 -0.3019 19 14 9.6559 1.2648 -1.8195 20 1 8.6003 2.0496 -1.1301 21 1 10.2648 2.0906 -2.8931 22 1 9.0559 0.0437 -2.4145 23 6 8.4790 -0.5659 0.0135 24 6 4.8221 -1.3532 0.0027 25 6 3.6022 -0.6959 -0.0038 26 7 2.2860 -1.1150 -0.0120 27 1 1.9750 -2.0338 -0.0133 28 1 -0.3633 0.0003 -1.0277 29 1 -0.3634 -0.8902 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.7314 2.5167 0.0000 32 1 6.8728 1.3506 0.0111 33 1 6.4208 -3.2638 0.0140 34 1 8.5491 -4.4688 0.0242 35 1 11.9755 2.4750 -0.7293 36 1 8.4351 0.5132 0.0083 37 1 4.8578 -2.4327 0.0035 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243963708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:48:56 Heat of formation + Delta-G solvation = 90.901916 kcal Electronic energy + Delta-G solvation = -22514.785793 eV Core-core repulsion = 19221.114071 eV Total energy + Delta-G solvation = -3293.671722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.107 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.06793 -40.09735 -38.27204 -36.91593 -35.74713 -34.21730 -33.07243 -32.57710 -31.55259 -30.49998 -28.12525 -27.34925 -24.64750 -23.79555 -22.54630 -22.13946 -21.74281 -19.55649 -19.30235 -18.67689 -18.05245 -17.03621 -16.49897 -16.44695 -15.89887 -15.50653 -15.29241 -14.95004 -14.73604 -14.52716 -14.40993 -14.08607 -13.98979 -13.80587 -13.55584 -13.41156 -13.30444 -12.99287 -12.90593 -12.71480 -12.64937 -12.28199 -12.02434 -11.83237 -11.66065 -11.54419 -11.09032 -10.91608 -9.89919 -9.61550 -9.33144 -9.05947 -8.55631 -6.66890 -0.46534 0.32498 0.67505 0.84726 1.26435 1.38739 1.49361 1.77001 1.96060 1.98889 2.05885 2.31287 2.59579 2.94787 3.21043 3.50963 3.52418 3.66989 3.81024 4.11123 4.18050 4.29073 4.38779 4.41675 4.55564 4.65804 4.73090 4.77042 4.79245 4.90999 5.07103 5.14172 5.17076 5.26322 5.42170 5.44053 5.49418 5.66783 5.73798 5.88261 5.98147 6.03780 6.22430 6.51086 6.52905 6.60486 6.90072 6.92183 8.00578 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.018534 B = 0.004129 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.394942 B = 6779.450475 C = 8084.166949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.289 3.711 3 N -0.537 5.537 4 C 0.025 3.975 5 C -0.079 4.079 6 C -0.125 4.125 7 C -0.040 4.040 8 C 0.022 3.978 9 C -0.218 4.218 10 C -0.009 4.009 11 C -0.185 4.185 12 C 0.302 3.698 13 N -0.524 5.524 14 C 0.120 3.880 15 C -0.460 4.460 16 H 0.054 0.946 17 C 0.053 3.947 18 N -0.823 5.823 19 Si 0.950 3.050 20 H -0.237 1.237 21 H -0.276 1.276 22 H -0.242 1.242 23 C -0.231 4.231 24 C -0.086 4.086 25 C 0.039 3.961 26 N -0.585 5.585 27 H 0.441 0.559 28 H 0.104 0.896 29 H 0.110 0.890 30 H 0.097 0.903 31 H 0.135 0.865 32 H 0.125 0.875 33 H 0.150 0.850 34 H 0.141 0.859 35 H 0.302 0.698 36 H 0.113 0.887 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.159 -2.589 -1.413 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.022 3.978 3 N -0.260 5.260 4 C -0.093 4.093 5 C -0.099 4.099 6 C -0.145 4.145 7 C -0.042 4.042 8 C 0.021 3.979 9 C -0.236 4.236 10 C -0.030 4.030 11 C -0.191 4.191 12 C -0.008 4.008 13 N -0.203 5.203 14 C 0.115 3.885 15 C -0.488 4.488 16 H 0.072 0.928 17 C -0.166 4.166 18 N -0.446 5.446 19 Si 0.771 3.229 20 H -0.161 1.161 21 H -0.203 1.203 22 H -0.165 1.165 23 C -0.250 4.250 24 C -0.107 4.107 25 C -0.071 4.071 26 N -0.199 5.199 27 H 0.283 0.717 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.153 0.847 32 H 0.143 0.857 33 H 0.167 0.833 34 H 0.159 0.841 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -24.684 -2.348 -1.413 24.835 hybrid contribution 0.713 -0.239 -0.208 0.780 sum -23.971 -2.586 -1.622 24.165 Atomic orbital electron populations 1.20614 0.80653 1.06236 1.05706 1.24524 0.97341 0.80395 0.95495 1.70365 1.00999 1.29615 1.25002 1.19363 0.92317 0.91564 1.06029 1.19990 0.88953 1.00222 1.00686 1.20946 0.97881 0.94188 1.01525 1.18680 0.91989 0.92738 1.00784 1.18622 0.90458 0.93821 0.95016 1.20686 0.97770 0.92057 1.13109 1.20883 0.89853 0.99466 0.92783 1.17242 0.86548 0.91305 1.23972 1.26029 0.92737 0.91113 0.90898 1.81018 1.11439 1.12529 1.15352 1.18492 0.92546 0.89864 0.87590 1.19511 0.97373 1.00580 1.31299 0.92821 1.26989 0.98168 0.94099 0.97342 1.69618 1.31630 1.07818 1.35536 0.85728 0.78450 0.80483 0.78214 1.16089 1.20260 1.16495 1.21095 0.91362 0.98638 1.13903 1.20171 0.87275 1.00757 1.02487 1.18783 0.86495 0.94763 1.07029 1.42964 1.03416 1.10814 1.62715 0.71671 0.87718 0.87139 0.88439 0.84691 0.85705 0.83253 0.84085 0.88705 0.86949 0.82475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.51 71.24 0.75 0.26 16 2 C 0.29 5.17 8.08 137.92 1.11 6.28 16 3 N -0.54 -14.47 11.27 -179.79 -2.03 -16.50 16 4 C 0.03 0.74 7.23 39.53 0.29 1.02 16 5 C -0.08 -2.38 10.03 22.23 0.22 -2.15 16 6 C -0.13 -4.01 9.33 22.23 0.21 -3.80 16 7 C -0.04 -1.25 5.88 -20.01 -0.12 -1.37 16 8 C 0.02 0.77 5.86 -20.13 -0.12 0.65 16 9 C -0.22 -6.66 9.36 22.53 0.21 -6.45 16 10 C -0.01 -0.32 9.74 22.47 0.22 -0.10 16 11 C -0.18 -7.97 5.95 -19.54 -0.12 -8.09 16 12 C 0.30 14.05 14.36 88.33 1.27 15.32 16 13 N -0.52 -25.63 18.54 19.00 0.35 -25.28 16 14 C 0.12 5.67 5.26 -19.90 -0.10 5.57 16 15 C -0.46 -24.62 9.02 23.39 0.21 -24.41 16 16 H 0.05 3.23 7.67 -2.91 -0.02 3.21 16 17 C 0.05 2.69 5.42 85.35 0.46 3.15 16 18 N -0.82 -42.94 13.92 21.87 0.30 -42.63 16 19 Si 0.95 39.05 24.53 68.60 1.68 40.73 16 20 H -0.24 -8.73 6.03 99.48 0.60 -8.13 16 21 H -0.28 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.24 -10.07 6.84 99.48 0.68 -9.39 16 23 C -0.23 -9.66 6.52 22.94 0.15 -9.51 16 24 C -0.09 -2.16 9.43 22.55 0.21 -1.95 16 25 C 0.04 0.97 7.29 38.81 0.28 1.25 16 26 N -0.59 -9.50 6.24 -179.27 -1.12 -10.62 16 27 H 0.44 3.37 8.96 -92.70 -0.83 2.54 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.08 8.14 -2.38 -0.02 0.06 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.14 3.67 8.06 -2.91 -0.02 3.65 16 32 H 0.13 4.14 5.40 -2.91 -0.02 4.13 16 33 H 0.15 3.30 6.08 -2.91 -0.02 3.28 16 34 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.30 13.97 8.29 -92.71 -0.77 13.21 16 36 H 0.11 4.67 2.89 -2.91 -0.01 4.66 16 37 H 0.16 2.92 6.11 -2.91 -0.02 2.90 16 Total: -1.00 -68.37 319.68 4.54 -63.84 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.20 Total: 14.79 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 5.14 Total: -24.33 kcal Atomic # 7 Polarization: -92.54 SS G_CDS: -2.49 Total: -95.03 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 1.68 Total: 40.73 kcal Total: -68.37 4.54 -63.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243963708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.737 kcal (2) G-P(sol) polarization free energy of solvation -68.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds