Wall clock time and date at job start Tue Mar 31 2020 08:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48498 * 109.46927 * 269.99952 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99961 * 3 2 1 6 6 H 1.48501 * 109.47336 * 150.00234 * 3 2 1 7 7 C 1.37870 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00577 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46069 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31306 * 181.38862 * 10 9 7 12 12 N 1.46930 * 108.77423 * 305.36278 * 11 10 9 13 13 S 1.65593 * 120.63356 * 233.58561 * 12 11 10 14 14 O 1.42096 * 104.27690 * 159.61601 * 13 12 11 15 15 O 1.42100 * 104.27804 * 31.75617 * 13 12 11 16 16 C 1.81403 * 104.45182 * 275.68808 * 13 12 11 17 17 H 1.09001 * 109.52012 * 60.73114 * 16 13 12 18 18 C 1.53172 * 109.52254 * 180.91825 * 16 13 12 19 19 C 1.53184 * 109.03630 * 176.88564 * 18 16 13 20 20 C 1.53095 * 109.16379 * 303.02322 * 19 18 16 21 21 O 1.42905 * 109.41543 * 57.60168 * 20 19 18 22 22 C 1.42901 * 114.10137 * 298.84561 * 21 20 19 23 23 C 1.46924 * 118.73520 * 53.85988 * 12 11 10 24 24 C 1.53036 * 109.45861 * 300.06997 * 9 7 2 25 25 H 0.97004 * 120.00131 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.44576 * 60.03587 * 9 7 2 27 27 H 1.08997 * 109.50011 * 61.43768 * 10 9 7 28 28 H 1.09001 * 109.49780 * 301.33662 * 10 9 7 29 29 H 1.08997 * 109.58731 * 185.58062 * 11 10 9 30 30 H 1.09004 * 109.70591 * 65.22078 * 11 10 9 31 31 H 1.08993 * 109.54577 * 57.02288 * 18 16 13 32 32 H 1.08998 * 109.55005 * 296.75104 * 18 16 13 33 33 H 1.08995 * 109.52430 * 183.11263 * 19 18 16 34 34 H 1.09002 * 109.52334 * 62.92382 * 19 18 16 35 35 H 1.08992 * 109.48196 * 177.59227 * 20 19 18 36 36 H 1.09000 * 109.47645 * 297.62541 * 20 19 18 37 37 H 1.08997 * 109.48033 * 181.13543 * 22 21 20 38 38 H 1.08997 * 109.48318 * 301.16447 * 22 21 20 39 39 H 1.09010 * 109.58792 * 65.93087 * 23 12 11 40 40 H 1.09002 * 109.58652 * 186.34853 * 23 12 11 41 41 H 1.08994 * 109.49790 * 298.56373 * 24 9 7 42 42 H 1.09005 * 109.50086 * 58.66567 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2458 -3.6621 0.0015 11 6 1.4768 -4.9866 -0.0324 12 7 0.5233 -5.0084 1.0852 13 16 0.5107 -6.2689 2.1591 14 8 -0.1424 -5.7446 3.3071 15 8 1.8655 -6.6935 2.2170 16 6 -0.5188 -7.5322 1.3623 17 1 -0.0677 -7.8249 0.4142 18 6 -0.6283 -8.7553 2.2778 19 6 -1.5621 -9.7824 1.6299 20 6 -2.9218 -9.1298 1.3668 21 8 -2.7446 -7.9814 0.5351 22 6 -1.9188 -6.9665 1.1097 23 6 -0.4230 -3.8936 1.2283 24 6 0.3705 -2.5783 1.2508 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5573 -0.8885 27 1 2.8563 -3.6189 0.9034 28 1 2.8877 -3.5916 -0.8767 29 1 2.1754 -5.8173 0.0671 30 1 0.9369 -5.0741 -0.9752 31 1 -1.0331 -8.4529 3.2436 32 1 0.3586 -9.1965 2.4166 33 1 -1.6895 -10.6325 2.2999 34 1 -1.1325 -10.1215 0.6872 35 1 -3.5768 -9.8433 0.8669 36 1 -3.3690 -8.8273 2.3137 37 1 -1.8513 -6.1216 0.4244 38 1 -2.3530 -6.6355 2.0531 39 1 -1.1150 -3.8912 0.3860 40 1 -0.9784 -4.0030 2.1598 41 1 0.9983 -2.5450 2.1412 42 1 -0.3221 -1.7367 1.2618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543688708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:17 Heat of formation + Delta-G solvation = -129.256727 kcal Electronic energy + Delta-G solvation = -24397.192119 eV Core-core repulsion = 20889.815883 eV Total energy + Delta-G solvation = -3507.376237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.49531 -37.73121 -37.03803 -35.80277 -34.09659 -33.45562 -31.63456 -30.82094 -30.04629 -25.84885 -25.38481 -24.21931 -22.52337 -22.34716 -20.83018 -19.48242 -18.47762 -17.39504 -17.08641 -16.61946 -16.19946 -15.88948 -15.60070 -15.01410 -14.55786 -14.30377 -14.07482 -13.93897 -13.40198 -13.12323 -13.04884 -12.80057 -12.71960 -12.35784 -12.12577 -11.97424 -11.90553 -11.61956 -11.61331 -11.35597 -10.97741 -10.93440 -10.80337 -10.60826 -10.46053 -10.33673 -10.02864 -9.83513 -9.54839 -9.18744 -8.95469 -8.39933 -8.24362 -5.99427 -4.05232 0.30981 2.80862 3.30911 3.38053 3.41780 3.59968 3.90969 3.98413 4.16666 4.44126 4.45555 4.52307 4.68484 4.88345 5.03815 5.16155 5.18212 5.30215 5.30578 5.33498 5.38881 5.52513 5.63429 5.75049 5.79876 5.84562 6.08722 6.10926 6.32508 6.43995 6.47612 6.73668 6.82873 6.92202 7.09986 7.24193 7.44316 7.73479 7.98113 8.09722 8.44885 8.98239 9.59701 11.06098 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.003950 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.622731 B = 7087.278670 C = 7442.626093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.890 3.110 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.055 0.945 9 C 0.050 3.950 10 C -0.120 4.120 11 C 0.120 3.880 12 N -0.988 5.988 13 S 2.610 3.390 14 O -0.952 6.952 15 O -0.955 6.955 16 C -0.640 4.640 17 H 0.142 0.858 18 C -0.110 4.110 19 C -0.146 4.146 20 C 0.054 3.946 21 O -0.369 6.369 22 C 0.084 3.916 23 C 0.112 3.888 24 C -0.119 4.119 25 H 0.260 0.740 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.079 0.921 41 H 0.040 0.960 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -18.112 2.059 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.159 4.159 11 C -0.005 4.005 12 N -0.828 5.828 13 S 2.702 3.298 14 O -0.943 6.943 15 O -0.945 6.945 16 C -0.748 4.748 17 H 0.160 0.840 18 C -0.149 4.149 19 C -0.185 4.185 20 C -0.022 4.022 21 O -0.287 6.287 22 C 0.006 3.994 23 C -0.012 4.012 24 C -0.158 4.158 25 H 0.070 0.930 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.111 -18.009 2.700 18.914 hybrid contribution 0.310 0.596 -0.341 0.754 sum -4.801 -17.412 2.359 18.215 Atomic orbital electron populations 1.69834 1.05830 1.26413 1.50979 1.24951 0.94864 0.99021 0.95132 0.86623 0.79929 0.83593 0.78002 1.20795 1.21285 1.19997 1.21224 0.92963 0.90645 1.50201 0.92712 1.18614 0.92642 0.91551 0.94090 1.21942 0.98818 0.94053 1.01052 1.21547 0.90674 1.00336 0.87928 1.57583 1.46258 1.33933 1.45060 1.05079 0.75149 0.74717 0.74826 1.93562 1.77762 1.76530 1.46425 1.93573 1.31515 1.83135 1.86265 1.31355 1.13643 1.16142 1.13611 0.83971 1.21385 1.02011 0.93920 0.97558 1.22087 0.96402 0.98075 1.01942 1.22657 0.96166 0.87973 0.95438 1.87968 1.68648 1.28129 1.43995 1.22310 0.85768 0.90722 1.00609 1.21899 0.91045 0.87389 1.00831 1.22030 0.99965 0.94327 0.99504 0.93011 0.95418 0.92681 0.92186 0.90787 0.91986 0.90295 0.89865 0.90168 0.90559 0.88522 0.92773 0.87032 0.91300 0.92083 0.90312 0.94108 0.87824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.31 55.43 0.63 -23.96 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.51 -13.71 8.56 -34.44 -0.29 -14.01 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.05 1.17 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.40 5.30 -26.61 -0.14 -2.54 16 11 C 0.12 1.96 6.41 -3.71 -0.02 1.94 16 12 N -0.99 -16.27 2.94 -113.27 -0.33 -16.61 16 13 S 2.61 39.62 4.88 -107.50 -0.52 39.10 16 14 O -0.95 -16.77 16.29 -57.54 -0.94 -17.70 16 15 O -0.95 -16.92 16.78 -57.54 -0.97 -17.89 16 16 C -0.64 -7.21 3.06 -26.59 -0.08 -7.29 16 17 H 0.14 1.42 8.14 -51.92 -0.42 1.00 16 18 C -0.11 -1.07 5.32 -26.55 -0.14 -1.21 16 19 C -0.15 -1.17 6.14 -26.59 -0.16 -1.33 16 20 C 0.05 0.47 6.84 37.21 0.25 0.73 16 21 O -0.37 -4.32 10.77 -35.23 -0.38 -4.70 16 22 C 0.08 0.96 5.99 37.21 0.22 1.18 16 23 C 0.11 2.02 5.92 -3.49 -0.02 1.99 16 24 C -0.12 -2.69 5.17 -26.39 -0.14 -2.82 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 1.09 7.02 -51.93 -0.36 0.72 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.11 1.25 7.26 -51.93 -0.38 0.87 16 38 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 39 H 0.06 1.01 8.00 -51.92 -0.42 0.59 16 40 H 0.08 1.33 6.72 -51.93 -0.35 0.98 16 41 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.10 2.59 6.03 -51.93 -0.31 2.28 16 LS Contribution 336.73 15.07 5.07 5.07 Total: -1.00 -31.76 336.73 -10.12 -41.88 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.85 Total: -0.41 kcal Atomic # 6 Polarization: -20.00 SS G_CDS: -0.81 Total: -20.81 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.29 Total: -40.56 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -2.28 Total: -40.29 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 39.62 SS G_CDS: -0.52 Total: 39.10 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.76 -10.12 -41.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543688708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.376 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds