Wall clock time and date at job start Tue Mar 31 2020 08:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99792 * 2 1 4 4 H 1.48498 * 109.46927 * 269.99952 * 3 2 1 5 5 H 1.48499 * 109.47282 * 29.99961 * 3 2 1 6 6 H 1.48501 * 109.47336 * 150.00234 * 3 2 1 7 7 C 1.37870 * 120.00399 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00577 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99934 * 359.97438 * 7 2 1 10 10 C 1.53037 * 109.46069 * 179.97438 * 9 7 2 11 11 C 1.53190 * 109.31306 * 181.38862 * 10 9 7 12 12 N 1.46930 * 108.77423 * 305.36278 * 11 10 9 13 13 S 1.65593 * 120.63356 * 233.58561 * 12 11 10 14 14 O 1.42096 * 104.27690 * 159.61601 * 13 12 11 15 15 O 1.42100 * 104.27804 * 31.75617 * 13 12 11 16 16 C 1.81403 * 104.45182 * 275.68808 * 13 12 11 17 17 H 1.09001 * 109.52012 * 60.73114 * 16 13 12 18 18 C 1.53172 * 109.52254 * 180.91825 * 16 13 12 19 19 C 1.53184 * 109.03630 * 176.88564 * 18 16 13 20 20 C 1.53095 * 109.16379 * 303.02322 * 19 18 16 21 21 O 1.42905 * 109.41543 * 57.60168 * 20 19 18 22 22 C 1.42901 * 114.10137 * 298.84561 * 21 20 19 23 23 C 1.46924 * 118.73520 * 53.85988 * 12 11 10 24 24 C 1.53036 * 109.45861 * 300.06997 * 9 7 2 25 25 H 0.97004 * 120.00131 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.44576 * 60.03587 * 9 7 2 27 27 H 1.08997 * 109.50011 * 61.43768 * 10 9 7 28 28 H 1.09001 * 109.49780 * 301.33662 * 10 9 7 29 29 H 1.08997 * 109.58731 * 185.58062 * 11 10 9 30 30 H 1.09004 * 109.70591 * 65.22078 * 11 10 9 31 31 H 1.08993 * 109.54577 * 57.02288 * 18 16 13 32 32 H 1.08998 * 109.55005 * 296.75104 * 18 16 13 33 33 H 1.08995 * 109.52430 * 183.11263 * 19 18 16 34 34 H 1.09002 * 109.52334 * 62.92382 * 19 18 16 35 35 H 1.08992 * 109.48196 * 177.59227 * 20 19 18 36 36 H 1.09000 * 109.47645 * 297.62541 * 20 19 18 37 37 H 1.08997 * 109.48033 * 181.13543 * 22 21 20 38 38 H 1.08997 * 109.48318 * 301.16447 * 22 21 20 39 39 H 1.09010 * 109.58792 * 65.93087 * 23 12 11 40 40 H 1.09002 * 109.58652 * 186.34853 * 23 12 11 41 41 H 1.08994 * 109.49790 * 298.56373 * 24 9 7 42 42 H 1.09005 * 109.50086 * 58.66567 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1939 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2458 -3.6621 0.0015 11 6 1.4768 -4.9866 -0.0324 12 7 0.5233 -5.0084 1.0852 13 16 0.5107 -6.2689 2.1591 14 8 -0.1424 -5.7446 3.3071 15 8 1.8655 -6.6935 2.2170 16 6 -0.5188 -7.5322 1.3623 17 1 -0.0677 -7.8249 0.4142 18 6 -0.6283 -8.7553 2.2778 19 6 -1.5621 -9.7824 1.6299 20 6 -2.9218 -9.1298 1.3668 21 8 -2.7446 -7.9814 0.5351 22 6 -1.9188 -6.9665 1.1097 23 6 -0.4230 -3.8936 1.2283 24 6 0.3705 -2.5783 1.2508 25 1 -0.4850 0.8401 0.0004 26 1 0.6247 -2.5573 -0.8885 27 1 2.8563 -3.6189 0.9034 28 1 2.8877 -3.5916 -0.8767 29 1 2.1754 -5.8173 0.0671 30 1 0.9369 -5.0741 -0.9752 31 1 -1.0331 -8.4529 3.2436 32 1 0.3586 -9.1965 2.4166 33 1 -1.6895 -10.6325 2.2999 34 1 -1.1325 -10.1215 0.6872 35 1 -3.5768 -9.8433 0.8669 36 1 -3.3690 -8.8273 2.3137 37 1 -1.8513 -6.1216 0.4244 38 1 -2.3530 -6.6355 2.0531 39 1 -1.1150 -3.8912 0.3860 40 1 -0.9784 -4.0030 2.1598 41 1 0.9983 -2.5450 2.1412 42 1 -0.3221 -1.7367 1.2618 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543688708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:07:17 Heat of formation + Delta-G solvation = -151.145617 kcal Electronic energy + Delta-G solvation = -24398.141293 eV Core-core repulsion = 20889.815883 eV Total energy + Delta-G solvation = -3508.325410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27883 -39.27763 -38.33345 -37.10224 -35.29628 -34.89157 -32.76117 -32.22504 -31.63284 -27.64061 -26.22436 -25.04954 -24.14844 -23.93146 -21.64063 -21.03826 -19.75768 -18.83421 -18.17245 -18.10674 -17.51743 -16.76407 -16.71001 -16.50568 -15.87997 -15.36221 -15.15690 -15.08305 -14.84690 -14.67633 -14.41467 -14.25684 -13.75170 -13.70132 -13.48206 -13.29209 -13.13953 -12.90261 -12.80336 -12.59008 -12.41398 -12.36034 -12.28528 -12.07822 -11.85936 -11.68564 -11.44482 -11.25628 -10.94617 -10.77759 -10.61895 -10.36668 -9.77542 -8.05498 -6.18239 -0.87553 1.41215 1.43252 1.52194 1.57222 2.45280 2.76403 2.88484 2.93674 3.20947 3.29354 3.54084 3.75885 3.84642 3.93462 4.10707 4.33954 4.36442 4.40242 4.49900 4.50850 4.55230 4.62794 4.69327 4.70145 4.81858 4.85067 4.89523 4.94319 4.99646 5.13726 5.18500 5.30255 5.35116 5.57857 5.66978 5.73487 6.05834 6.08459 6.18767 6.44173 6.92323 7.49133 8.97772 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.030275 B = 0.003950 C = 0.003761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.622731 B = 7087.278670 C = 7442.626093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.016 3.984 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.046 0.954 9 C 0.047 3.953 10 C -0.118 4.118 11 C 0.123 3.877 12 N -0.996 5.996 13 S 2.613 3.387 14 O -0.984 6.984 15 O -0.984 6.984 16 C -0.608 4.608 17 H 0.163 0.837 18 C -0.123 4.123 19 C -0.141 4.141 20 C 0.042 3.958 21 O -0.384 6.384 22 C 0.078 3.922 23 C 0.124 3.876 24 C -0.116 4.116 25 H 0.261 0.739 26 H 0.011 0.989 27 H 0.035 0.965 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.113 0.887 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.017 0.983 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.934 -20.353 1.482 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.064 0.936 9 C 0.028 3.972 10 C -0.157 4.157 11 C -0.002 4.002 12 N -0.834 5.834 13 S 2.711 3.289 14 O -0.974 6.974 15 O -0.975 6.975 16 C -0.720 4.720 17 H 0.181 0.819 18 C -0.162 4.162 19 C -0.179 4.179 20 C -0.034 4.034 21 O -0.302 6.302 22 C 0.000 4.000 23 C -0.001 4.001 24 C -0.156 4.156 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.124 0.876 34 H 0.098 0.902 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.705 -20.213 2.139 21.111 hybrid contribution 0.473 1.210 -0.141 1.307 sum -5.232 -19.003 1.998 19.811 Atomic orbital electron populations 1.69950 1.06783 1.27014 1.51373 1.25635 0.95704 1.01930 0.94981 0.85723 0.78676 0.80050 0.78166 1.20054 1.20947 1.20002 1.21618 0.92921 0.92555 1.50350 0.93565 1.18586 0.93110 0.91896 0.93609 1.21847 0.98311 0.95065 1.00469 1.21568 0.91011 0.98539 0.89084 1.57495 1.46258 1.34588 1.45061 1.04843 0.74856 0.74985 0.74262 1.93518 1.78011 1.77648 1.48246 1.93532 1.33869 1.83443 1.86629 1.31029 1.12338 1.14461 1.14162 0.81899 1.21625 1.03407 0.93622 0.97540 1.22105 0.95209 0.98066 1.02553 1.22961 0.97153 0.87486 0.95782 1.87961 1.68445 1.28918 1.44891 1.22370 0.85684 0.91090 1.00869 1.21645 0.90741 0.85530 1.02152 1.21845 0.99353 0.96403 0.97965 0.93013 0.97059 0.94569 0.91465 0.88714 0.89426 0.89986 0.88808 0.87632 0.90166 0.86548 0.92158 0.86879 0.91220 0.90221 0.89469 0.96443 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.37 11.31 21.44 0.24 -51.13 16 2 C 0.02 0.90 5.30 84.65 0.45 1.34 16 3 Si 0.95 43.78 29.54 68.60 2.03 45.81 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -29.52 8.56 25.60 0.22 -29.30 16 8 H 0.05 2.54 7.74 -2.91 -0.02 2.52 16 9 C 0.05 2.26 2.06 -11.51 -0.02 2.24 16 10 C -0.12 -4.76 5.30 30.67 0.16 -4.59 16 11 C 0.12 3.82 6.41 86.36 0.55 4.38 16 12 N -1.00 -31.83 2.94 -512.26 -1.51 -33.34 16 13 S 2.61 76.14 4.88 -56.49 -0.28 75.87 16 14 O -0.98 -34.25 16.29 -127.65 -2.08 -36.33 16 15 O -0.98 -33.88 16.78 -127.65 -2.14 -36.03 16 16 C -0.61 -11.97 3.06 30.68 0.09 -11.88 16 17 H 0.16 2.63 8.14 -2.39 -0.02 2.61 16 18 C -0.12 -1.99 5.32 30.71 0.16 -1.83 16 19 C -0.14 -1.68 6.14 30.69 0.19 -1.50 16 20 C 0.04 0.59 6.84 72.01 0.49 1.08 16 21 O -0.38 -7.83 10.77 -148.98 -1.60 -9.44 16 22 C 0.08 1.59 5.99 72.01 0.43 2.03 16 23 C 0.12 4.42 5.92 86.51 0.51 4.94 16 24 C -0.12 -5.43 5.17 30.82 0.16 -5.27 16 25 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.07 2.55 8.14 -2.39 -0.02 2.54 16 29 H 0.09 2.58 7.02 -2.39 -0.02 2.57 16 30 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 2.26 7.26 -2.39 -0.02 2.24 16 38 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 39 H 0.08 2.55 8.00 -2.38 -0.02 2.53 16 40 H 0.09 2.95 6.72 -2.39 -0.02 2.94 16 41 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 3.95 6.03 -2.38 -0.01 3.93 16 Total: -1.00 -69.79 336.73 -0.95 -70.74 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.99 Total: 12.21 kcal Atomic # 6 Polarization: -41.77 SS G_CDS: 3.40 Total: -38.37 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -1.26 Total: -84.46 kcal Atomic # 8 Polarization: -75.97 SS G_CDS: -5.82 Total: -81.80 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: 76.14 SS G_CDS: -0.28 Total: 75.87 kcal Total: -69.79 -0.95 -70.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543688708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.406 kcal (2) G-P(sol) polarization free energy of solvation -69.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds