Wall clock time and date at job start Tue Mar 31 2020 07:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30822 * 1 3 3 Si 1.86801 * 119.99856 * 2 1 4 4 H 1.48500 * 109.46947 * 269.99997 * 3 2 1 5 5 H 1.48501 * 109.47279 * 30.00294 * 3 2 1 6 6 H 1.48504 * 109.46959 * 150.00206 * 3 2 1 7 7 C 1.39943 * 120.00140 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00261 * 195.14755 * 7 2 1 9 9 C 1.41402 * 120.00100 * 15.13745 * 7 2 1 10 10 C 1.40720 * 120.23996 * 27.74444 * 9 7 2 11 11 C 1.37615 * 119.74263 * 179.97438 * 10 9 7 12 12 C 1.38639 * 120.25090 * 359.97438 * 11 10 9 13 13 C 1.50694 * 119.74795 * 179.97438 * 12 11 10 14 14 N 1.46505 * 109.47231 * 90.00315 * 13 12 11 15 15 C 1.34770 * 120.00388 * 179.97438 * 14 13 12 16 16 O 1.21282 * 119.99901 * 0.02562 * 15 14 13 17 17 C 1.50694 * 120.00405 * 180.02562 * 15 14 13 18 18 H 1.08999 * 112.84880 * 21.71318 * 17 15 14 19 19 C 1.53778 * 113.61800 * 152.91177 * 17 15 14 20 20 C 1.53790 * 87.08026 * 89.11772 * 19 17 15 21 21 C 1.53777 * 87.08254 * 25.42934 * 20 19 17 22 22 H 1.09002 * 113.61108 * 89.11360 * 21 20 19 23 23 C 1.50693 * 113.62090 * 220.01820 * 21 20 19 24 24 O 1.20825 * 120.00229 * 121.07689 * 23 21 20 25 25 O 1.34231 * 119.99862 * 301.09054 * 23 21 20 26 26 C 1.38634 * 120.49750 * 0.28043 * 12 11 10 27 27 C 1.37620 * 120.25024 * 359.43829 * 26 12 11 28 28 H 0.97001 * 119.99937 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.12883 * 359.97438 * 10 9 7 30 30 H 1.07998 * 119.87525 * 180.02562 * 11 10 9 31 31 H 1.09001 * 109.47169 * 210.00262 * 13 12 11 32 32 H 1.08997 * 109.47575 * 330.00217 * 13 12 11 33 33 H 0.97000 * 119.99327 * 0.02562 * 14 13 12 34 34 H 1.09000 * 113.61687 * 203.66088 * 19 17 15 35 35 H 1.08995 * 113.61737 * 334.56922 * 19 17 15 36 36 H 1.08994 * 113.61462 * 139.98237 * 20 19 17 37 37 H 1.09000 * 113.60990 * 270.79888 * 20 19 17 38 38 H 0.96700 * 116.99946 * 179.97438 * 25 23 21 39 39 H 1.08002 * 119.87217 * 179.70101 * 26 12 11 40 40 H 1.07996 * 120.12942 * 180.27964 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4897 2.0464 -1.4001 5 1 1.4397 2.6527 0.7001 6 1 3.5398 1.4402 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0598 -1.2283 0.2439 9 6 1.3378 -2.4151 -0.3209 10 6 0.2143 -2.3967 -1.1679 11 6 -0.4299 -3.5738 -1.4733 12 6 0.0245 -4.7747 -0.9503 13 6 -0.6898 -6.0569 -1.2918 14 7 -0.0984 -6.6388 -2.4992 15 6 -0.5793 -7.7962 -2.9948 16 8 -1.5021 -8.3557 -2.4414 17 6 0.0294 -8.3950 -4.2364 18 1 1.0435 -8.0419 -4.4233 19 6 -0.1153 -9.9238 -4.3178 20 6 -1.4571 -9.6802 -5.0287 21 6 -0.8874 -8.3214 -5.4689 22 1 -0.3494 -8.3598 -6.4161 23 6 -1.8903 -7.1982 -5.4091 24 8 -1.6738 -6.2311 -4.7180 25 8 -3.0244 -7.2723 -6.1234 26 6 1.1272 -4.8040 -0.1106 27 6 1.7904 -3.6399 0.2038 28 1 -0.4850 0.8401 0.0004 29 1 -0.1412 -1.4624 -1.5768 30 1 -1.2921 -3.5622 -2.1235 31 1 -0.5911 -6.7593 -0.4641 32 1 -1.7452 -5.8491 -1.4680 33 1 0.6399 -6.1914 -2.9416 34 1 0.6336 -10.4003 -4.9503 35 1 -0.2176 -10.4051 -3.3452 36 1 -1.6433 -10.3645 -5.8563 37 1 -2.3040 -9.5999 -4.3471 38 1 -3.6373 -6.5278 -6.0526 39 1 1.4696 -5.7446 0.2950 40 1 2.6519 -3.6655 0.8545 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574479010.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:45:35 Heat of formation + Delta-G solvation = -116.291315 kcal Electronic energy + Delta-G solvation = -24126.831933 eV Core-core repulsion = 20484.573967 eV Total energy + Delta-G solvation = -3642.257965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.20892 -40.46152 -39.57542 -38.16362 -37.06639 -36.22616 -35.02737 -32.14887 -31.22594 -29.13125 -28.40972 -27.22826 -25.20250 -23.09544 -22.92685 -22.39790 -21.81754 -20.25557 -19.24887 -19.12828 -18.37696 -17.50096 -17.22061 -17.12249 -16.45781 -16.10232 -15.77409 -15.70649 -15.44689 -15.23652 -14.87349 -14.27620 -14.08232 -13.87415 -13.70611 -13.67254 -13.36542 -13.05746 -12.92329 -12.78599 -12.55449 -12.46757 -12.37182 -12.17177 -11.95359 -11.51834 -11.45342 -11.32254 -11.30975 -11.09323 -10.73037 -9.93294 -9.42306 -9.28222 -8.66079 -6.39751 0.82219 1.09720 1.20078 1.37495 1.47109 1.51151 1.62601 2.10406 2.19319 2.41960 2.78091 3.29034 3.53308 3.66748 3.74283 3.82435 4.13557 4.25974 4.28868 4.43856 4.48104 4.55538 4.62748 4.72269 4.75758 4.85694 5.01120 5.02635 5.09501 5.13628 5.30897 5.39126 5.41969 5.54789 5.61253 5.66262 5.87193 6.06227 6.17124 6.33034 6.65316 6.70254 6.89963 6.95467 6.97863 7.32504 8.31512 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.025542 B = 0.003044 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.990282 B = 9194.990907 C = 9752.723563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.498 4.498 8 H 0.079 0.921 9 C 0.088 3.912 10 C -0.186 4.186 11 C -0.083 4.083 12 C -0.223 4.223 13 C 0.199 3.801 14 N -0.697 5.697 15 C 0.526 3.474 16 O -0.593 6.593 17 C -0.129 4.129 18 H 0.130 0.870 19 C -0.106 4.106 20 C -0.119 4.119 21 C -0.085 4.085 22 H 0.180 0.820 23 C 0.473 3.527 24 O -0.540 6.540 25 O -0.511 6.511 26 C -0.069 4.069 27 C -0.237 4.237 28 H 0.288 0.712 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.038 0.962 33 H 0.405 0.595 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.422 0.578 39 H 0.119 0.881 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 -15.149 -13.440 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.182 4.182 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.180 1.180 7 C -0.528 4.528 8 H 0.098 0.902 9 C 0.086 3.914 10 C -0.205 4.205 11 C -0.102 4.102 12 C -0.225 4.225 13 C 0.076 3.924 14 N -0.345 5.345 15 C 0.314 3.686 16 O -0.475 6.475 17 C -0.150 4.150 18 H 0.148 0.852 19 C -0.144 4.144 20 C -0.156 4.156 21 C -0.104 4.104 22 H 0.197 0.803 23 C 0.316 3.684 24 O -0.430 6.430 25 O -0.324 6.324 26 C -0.087 4.087 27 C -0.256 4.256 28 H 0.098 0.902 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.240 0.760 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.130 0.870 37 H 0.082 0.918 38 H 0.282 0.718 39 H 0.137 0.863 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.251 -15.440 -12.853 20.092 hybrid contribution -0.263 2.098 0.286 2.133 sum -0.513 -13.343 -12.567 18.336 Atomic orbital electron populations 1.69879 1.09105 1.30591 1.35872 1.26807 0.95512 1.04684 0.91190 0.85158 0.79055 0.75713 0.79510 1.18679 1.19412 1.17955 1.19894 0.97556 0.92084 1.43228 0.90239 1.17997 0.91540 0.93292 0.88618 1.21198 1.00467 0.96527 1.02348 1.20683 0.98131 0.92804 0.98590 1.19212 1.01883 0.93174 1.08195 1.19597 0.94848 0.91389 0.86588 1.46097 1.36929 1.23329 1.28152 1.20532 0.82440 0.80256 0.85420 1.90624 1.31168 1.63126 1.62620 1.22593 1.01312 1.00221 0.90915 0.85214 1.22829 0.98119 0.91163 1.02279 1.22888 0.97951 0.93755 1.00996 1.22720 0.93863 0.92314 1.01454 0.80311 1.24002 0.81893 0.87437 0.75046 1.90837 1.77427 1.34951 1.39742 1.84468 1.31129 1.51604 1.65233 1.20684 0.94422 0.97101 0.96504 1.21200 1.04456 0.93198 1.06796 0.90165 0.88558 0.88982 0.92160 0.94348 0.75956 0.84661 0.91508 0.87032 0.91791 0.71752 0.86284 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.14 11.02 21.83 0.24 -43.90 16 2 C 0.03 1.66 5.17 85.26 0.44 2.10 16 3 Si 0.99 38.29 29.59 68.60 2.03 40.32 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.01 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 7 C -0.50 -26.85 9.05 23.46 0.21 -26.63 16 8 H 0.08 4.09 7.89 -2.91 -0.02 4.07 16 9 C 0.09 4.76 5.54 -21.29 -0.12 4.64 16 10 C -0.19 -10.00 8.67 22.73 0.20 -9.80 16 11 C -0.08 -4.02 9.67 22.22 0.21 -3.81 16 12 C -0.22 -9.68 5.27 -19.68 -0.10 -9.78 16 13 C 0.20 7.70 5.79 85.63 0.50 8.20 16 14 N -0.70 -23.18 4.88 -466.80 -2.28 -25.46 16 15 C 0.53 16.30 4.85 87.66 0.42 16.73 16 16 O -0.59 -22.51 15.22 -3.03 -0.05 -22.56 16 17 C -0.13 -2.50 4.16 -11.01 -0.05 -2.55 16 18 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 19 C -0.11 -1.51 7.44 31.12 0.23 -1.27 16 20 C -0.12 -1.85 7.21 31.12 0.22 -1.63 16 21 C -0.08 -1.37 4.21 -11.02 -0.05 -1.42 16 22 H 0.18 1.37 8.14 -2.39 -0.02 1.35 16 23 C 0.47 11.32 7.29 71.23 0.52 11.84 16 24 O -0.54 -17.75 14.99 21.97 0.33 -17.42 16 25 O -0.51 -9.65 13.42 -51.42 -0.69 -10.34 16 26 C -0.07 -2.95 9.67 22.22 0.21 -2.74 16 27 C -0.24 -11.48 9.80 22.73 0.22 -11.26 16 28 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 29 H 0.10 5.46 6.31 -2.91 -0.02 5.45 16 30 H 0.09 4.30 8.06 -2.91 -0.02 4.28 16 31 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 32 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.41 12.56 8.46 -92.71 -0.78 11.78 16 34 H 0.14 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.23 7.92 -2.39 -0.02 1.21 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.48 7.19 -2.39 -0.02 1.46 16 38 H 0.42 5.41 9.10 -74.06 -0.67 4.74 16 39 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 40 H 0.10 4.68 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -72.44 342.30 2.30 -70.14 By element: Atomic # 1 Polarization: 36.97 SS G_CDS: -0.37 Total: 36.60 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.08 Total: -27.38 kcal Atomic # 7 Polarization: -67.32 SS G_CDS: -2.04 Total: -69.36 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -0.41 Total: -50.32 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -72.44 2.30 -70.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479010.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.147 kcal (2) G-P(sol) polarization free energy of solvation -72.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds