Wall clock time and date at job start Tue Mar 31 2020 07:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30626 * 1 3 3 Si 1.86796 * 120.00350 * 2 1 4 4 H 1.48501 * 109.47333 * 268.97620 * 3 2 1 5 5 H 1.48504 * 109.46930 * 28.96780 * 3 2 1 6 6 H 1.48499 * 109.47530 * 148.96798 * 3 2 1 7 7 C 1.40271 * 120.00017 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00129 * 350.23532 * 7 2 1 9 9 C 1.40887 * 120.00190 * 170.23702 * 7 2 1 10 10 C 1.40707 * 120.32804 * 324.79255 * 9 7 2 11 11 C 1.37593 * 119.88553 * 180.02562 * 10 9 7 12 12 C 1.38835 * 120.56945 * 0.02562 * 11 10 9 13 13 C 1.38223 * 120.67497 * 0.25257 * 12 11 10 14 14 C 1.39225 * 120.08862 * 359.49694 * 13 12 11 15 15 C 1.47437 * 120.28067 * 180.25191 * 14 13 12 16 16 O 1.21609 * 119.99894 * 174.13599 * 15 14 13 17 17 N 1.34777 * 119.99979 * 354.13394 * 15 14 13 18 18 C 1.46500 * 120.00166 * 180.02562 * 17 15 14 19 19 H 1.08998 * 110.01362 * 325.70003 * 18 17 15 20 20 C 1.54264 * 110.02930 * 87.09162 * 18 17 15 21 21 C 1.55016 * 104.13614 * 95.68821 * 20 18 17 22 22 C 1.54889 * 102.75582 * 37.94676 * 21 20 18 23 23 H 1.09009 * 110.48180 * 80.72696 * 22 21 20 24 24 C 1.50698 * 110.60107 * 203.31118 * 22 21 20 25 25 O 1.20827 * 119.99550 * 114.84053 * 24 22 21 26 26 O 1.34226 * 119.99973 * 294.83986 * 24 22 21 27 27 C 1.53877 * 110.03267 * 204.31084 * 18 17 15 28 28 H 0.97003 * 119.99931 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.05655 * 0.05188 * 10 9 7 30 30 H 1.07997 * 119.71939 * 179.97438 * 11 10 9 31 31 H 1.07992 * 119.66374 * 179.97438 * 12 11 10 32 32 H 1.08000 * 119.95451 * 179.71931 * 13 12 11 33 33 H 0.97003 * 119.99943 * 359.97438 * 17 15 14 34 34 H 1.08998 * 110.48615 * 214.35126 * 20 18 17 35 35 H 1.09001 * 110.49014 * 336.99768 * 20 18 17 36 36 H 1.09000 * 110.76223 * 279.62539 * 21 20 18 37 37 H 1.09006 * 110.90065 * 156.33210 * 21 20 18 38 38 H 0.96707 * 116.99806 * 179.97438 * 26 24 22 39 39 H 1.08997 * 110.02807 * 359.97438 * 27 18 17 40 40 H 1.09000 * 110.02998 * 121.38440 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6176 0.0000 4 1 2.5096 2.0339 -1.3998 5 1 1.4270 2.6588 0.6781 6 1 3.5268 1.4465 0.7217 7 6 2.0076 -1.2148 0.0005 8 1 1.4794 -2.1433 0.1596 9 6 3.4012 -1.2238 -0.2063 10 6 3.9949 -0.2992 -1.0853 11 6 5.3568 -0.3165 -1.2810 12 6 6.1537 -1.2402 -0.6182 13 6 5.5944 -2.1626 0.2460 14 6 4.2201 -2.1666 0.4686 15 6 3.6196 -3.1450 1.3938 16 8 2.4366 -3.0770 1.6669 17 7 4.3820 -4.1148 1.9368 18 6 3.7853 -5.0874 2.8556 19 1 3.0043 -4.6106 3.4480 20 6 3.1975 -6.2724 2.0620 21 6 4.3202 -7.3409 2.0901 22 6 4.9003 -7.1901 3.5183 23 1 4.2763 -7.7161 4.2409 24 6 6.3158 -7.7042 3.5727 25 8 7.2266 -6.9431 3.7991 26 8 6.5648 -9.0074 3.3696 27 6 4.8673 -5.6704 3.7815 28 1 -0.4850 0.8401 -0.0004 29 1 3.3829 0.4229 -1.6051 30 1 5.8096 0.3941 -1.9565 31 1 7.2210 -1.2409 -0.7830 32 1 6.2248 -2.8788 0.7520 33 1 5.3256 -4.1693 1.7186 34 1 2.2989 -6.6500 2.5499 35 1 2.9793 -5.9742 1.0366 36 1 5.0800 -7.1229 1.3395 37 1 3.9099 -8.3401 1.9433 38 1 7.4886 -9.2900 3.4140 39 1 5.8363 -5.2300 3.5468 40 1 4.6113 -5.4766 4.8232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574479235.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:27 Heat of formation + Delta-G solvation = -115.049127 kcal Electronic energy + Delta-G solvation = -24452.332867 eV Core-core repulsion = 20810.128767 eV Total energy + Delta-G solvation = -3642.204100 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.75263 -39.29603 -37.85451 -36.61741 -36.22840 -33.79569 -32.97215 -30.46075 -30.25342 -29.11528 -27.95202 -25.32252 -23.43747 -22.50709 -21.37960 -20.53261 -19.81609 -19.37571 -18.32975 -17.54656 -17.10996 -16.77648 -16.07299 -15.62401 -15.20805 -14.95955 -14.28132 -14.09394 -13.80585 -13.73565 -13.48203 -13.32847 -12.64787 -12.48234 -12.15425 -12.02625 -11.81349 -11.66790 -11.64151 -11.42201 -11.34044 -11.00679 -10.92862 -10.82229 -10.72010 -10.55502 -10.42414 -10.11209 -9.78334 -9.23026 -8.48904 -8.40086 -7.81509 -7.60189 -6.90955 -4.47275 1.97114 2.11617 2.60813 2.78044 3.09094 3.18143 3.29554 3.90149 3.95585 3.99883 4.28438 4.40961 4.60959 4.75412 5.13153 5.26672 5.31244 5.36201 5.41824 5.42955 5.59424 5.73557 5.80517 5.90347 5.92057 6.03089 6.09157 6.21287 6.24397 6.32898 6.44076 6.52332 6.80494 7.09704 7.15872 7.25228 7.40747 7.60020 7.65061 7.75653 8.02250 8.33140 8.46726 8.64016 8.84226 9.35998 10.06738 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.022535 B = 0.003781 C = 0.003410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.226258 B = 7403.311206 C = 8208.181670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.268 1.268 5 H -0.290 1.290 6 H -0.244 1.244 7 C -0.395 4.395 8 H 0.118 0.882 9 C 0.117 3.883 10 C -0.232 4.232 11 C -0.063 4.063 12 C -0.256 4.256 13 C -0.041 4.041 14 C -0.250 4.250 15 C 0.562 3.438 16 O -0.526 6.526 17 N -0.742 5.742 18 C 0.147 3.853 19 H 0.093 0.907 20 C -0.133 4.133 21 C -0.109 4.109 22 C -0.087 4.087 23 H 0.115 0.885 24 C 0.485 3.515 25 O -0.514 6.514 26 O -0.516 6.516 27 C -0.123 4.123 28 H 0.287 0.713 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.391 0.609 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.408 0.592 39 H 0.091 0.909 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.224 -12.640 5.151 16.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.142 4.142 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.422 4.422 8 H 0.136 0.864 9 C 0.113 3.887 10 C -0.251 4.251 11 C -0.082 4.082 12 C -0.275 4.275 13 C -0.059 4.059 14 C -0.255 4.255 15 C 0.355 3.645 16 O -0.403 6.403 17 N -0.397 5.397 18 C 0.041 3.959 19 H 0.111 0.889 20 C -0.172 4.172 21 C -0.147 4.147 22 C -0.107 4.107 23 H 0.133 0.867 24 C 0.328 3.672 25 O -0.402 6.402 26 O -0.328 6.328 27 C -0.161 4.161 28 H 0.098 0.902 29 H 0.124 0.876 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.226 0.774 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.879 -12.146 5.422 15.459 hybrid contribution 1.511 0.512 -0.078 1.597 sum 9.390 -11.634 5.344 15.877 Atomic orbital electron populations 1.69560 1.08196 1.30365 1.33598 1.26354 0.94878 1.01665 0.91265 0.86363 0.80912 0.79633 0.79295 1.19423 1.21754 1.16770 1.20050 0.90640 0.96341 1.35185 0.86425 1.17538 0.93163 0.89483 0.88550 1.21200 0.94715 1.04872 1.04335 1.20734 0.93768 0.96611 0.97081 1.20285 0.97839 1.02513 1.06898 1.20791 0.93622 0.96050 0.95483 1.19424 0.92745 1.06336 1.07023 1.18367 0.86034 0.80087 0.80038 1.90750 1.15374 1.73101 1.61098 1.46193 1.12796 1.31410 1.49262 1.21323 0.94979 0.89285 0.90321 0.88900 1.22851 0.97314 0.94700 1.02356 1.22515 0.98586 1.00395 0.93180 1.21928 0.89481 0.97748 1.01515 0.86726 1.23484 0.92643 0.79518 0.71578 1.90724 1.47267 1.57400 1.44773 1.84554 1.36582 1.27822 1.83818 1.22500 1.01188 0.91623 1.00754 0.90247 0.87631 0.88613 0.88578 0.88717 0.77426 0.90527 0.90091 0.90983 0.90249 0.73346 0.89029 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.55 13.92 55.56 0.77 -20.77 16 2 C 0.08 2.10 5.48 -17.30 -0.09 2.01 16 3 Si 0.91 20.96 24.47 -169.99 -4.16 16.80 16 4 H -0.27 -5.85 6.57 56.52 0.37 -5.48 16 5 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 6 H -0.24 -5.79 6.84 56.52 0.39 -5.40 16 7 C -0.40 -11.05 8.20 -37.82 -0.31 -11.36 16 8 H 0.12 3.61 6.18 -52.49 -0.32 3.29 16 9 C 0.12 3.02 5.08 -106.54 -0.54 2.48 16 10 C -0.23 -5.51 7.06 -38.89 -0.27 -5.79 16 11 C -0.06 -1.33 10.01 -39.60 -0.40 -1.72 16 12 C -0.26 -5.09 10.03 -39.37 -0.39 -5.48 16 13 C -0.04 -0.82 9.52 -39.22 -0.37 -1.19 16 14 C -0.25 -5.85 5.92 -104.36 -0.62 -6.46 16 15 C 0.56 12.48 7.71 -12.51 -0.10 12.38 16 16 O -0.53 -13.61 13.28 5.27 0.07 -13.54 16 17 N -0.74 -12.47 4.98 -53.79 -0.27 -12.73 16 18 C 0.15 2.06 3.23 -66.81 -0.22 1.84 16 19 H 0.09 1.47 7.58 -51.93 -0.39 1.08 16 20 C -0.13 -1.66 6.54 -25.00 -0.16 -1.82 16 21 C -0.11 -1.07 6.33 -24.67 -0.16 -1.22 16 22 C -0.09 -0.82 3.36 -90.11 -0.30 -1.12 16 23 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 24 C 0.49 4.93 7.63 36.00 0.27 5.21 16 25 O -0.51 -6.83 16.18 -18.75 -0.30 -7.13 16 26 O -0.52 -3.93 13.42 -39.25 -0.53 -4.46 16 27 C -0.12 -1.37 5.95 -25.61 -0.15 -1.52 16 28 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 29 H 0.11 2.47 4.69 -52.49 -0.25 2.23 16 30 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.09 1.57 6.44 -52.49 -0.34 1.24 16 33 H 0.39 5.84 6.37 -40.82 -0.26 5.58 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 36 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.41 1.47 9.10 45.56 0.41 1.88 16 39 H 0.09 1.14 6.32 -51.93 -0.33 0.81 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 328.60 15.07 4.95 4.95 Total: -1.00 -32.40 328.60 -7.31 -39.71 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -4.03 Total: 10.96 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.82 Total: -13.78 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.51 Total: -33.51 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.76 Total: -25.13 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.16 Total: 16.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.40 -7.31 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574479235.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.343 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds