Wall clock time and date at job start Tue Mar 31 2020 07:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99835 * 2 1 4 4 H 1.48495 * 109.46987 * 359.97438 * 3 2 1 5 5 H 1.48492 * 109.47039 * 119.99983 * 3 2 1 6 6 H 1.48501 * 109.46526 * 240.00072 * 3 2 1 7 7 C 1.37868 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00209 * 173.46053 * 7 2 1 9 9 C 1.50705 * 120.00282 * 353.46678 * 7 2 1 10 10 H 1.09003 * 109.46894 * 326.77107 * 9 7 2 11 11 C 1.50696 * 109.47008 * 206.77127 * 9 7 2 12 12 O 1.21285 * 120.00005 * 239.99605 * 11 9 7 13 13 N 1.34775 * 120.00261 * 59.99877 * 11 9 7 14 14 C 1.46504 * 120.00026 * 179.97438 * 13 11 9 15 15 H 1.08997 * 112.84669 * 336.19047 * 14 13 11 16 16 C 1.53778 * 113.61195 * 107.50381 * 14 13 11 17 17 C 1.53780 * 87.08179 * 89.11660 * 16 14 13 18 18 H 1.09000 * 113.61430 * 270.87979 * 17 16 14 19 19 C 1.50705 * 113.68904 * 139.99275 * 17 16 14 20 20 O 1.20822 * 119.99796 * 262.45793 * 19 17 16 21 21 O 1.34225 * 120.00261 * 82.46325 * 19 17 16 22 22 C 1.53771 * 87.08344 * 25.43016 * 17 16 14 23 23 C 1.50699 * 109.47305 * 86.76700 * 9 7 2 24 24 C 1.38236 * 119.99664 * 52.97224 * 23 9 7 25 25 C 1.38241 * 119.99854 * 179.78839 * 24 23 9 26 26 C 1.38236 * 119.99541 * 0.43781 * 25 24 23 27 27 C 1.38229 * 120.00439 * 359.81950 * 26 25 24 28 28 C 1.38233 * 120.00070 * 233.24810 * 23 9 7 29 29 H 0.97001 * 120.00189 * 174.55505 * 1 2 3 30 30 H 0.97006 * 120.00131 * 359.97438 * 13 11 9 31 31 H 1.09005 * 113.61382 * 203.66294 * 16 14 13 32 32 H 1.09001 * 113.61851 * 334.56222 * 16 14 13 33 33 H 0.96697 * 117.00167 * 179.97438 * 21 19 17 34 34 H 1.09004 * 113.61863 * 220.01940 * 22 17 16 35 35 H 1.09000 * 113.61924 * 89.11709 * 22 17 16 36 36 H 1.08000 * 120.00151 * 359.97438 * 24 23 9 37 37 H 1.07998 * 120.00164 * 180.27604 * 25 24 23 38 38 H 1.08004 * 119.99707 * 179.83685 * 26 25 24 39 39 H 1.08000 * 120.00749 * 180.02562 * 27 26 25 40 40 H 1.08000 * 120.00044 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2124 6 1 3.1028 1.6964 -1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1971 -0.1060 9 6 1.2583 -2.4948 0.1496 10 1 0.3919 -2.3449 0.7938 11 6 2.1677 -3.5280 0.7632 12 8 2.4195 -4.5494 0.1596 13 7 2.7013 -3.3171 1.9827 14 6 3.5849 -4.3218 2.5794 15 1 3.4197 -5.3220 2.1791 16 6 5.0644 -3.9032 2.6057 17 6 4.7780 -3.2645 3.9750 18 1 4.4468 -2.2279 3.9126 19 6 5.8825 -3.4663 4.9802 20 8 5.8043 -4.3568 5.7930 21 8 6.9532 -2.6568 4.9726 22 6 3.6250 -4.2721 4.1160 23 6 0.8007 -2.9696 -1.2054 24 6 1.7104 -3.0894 -2.2394 25 6 1.2914 -3.5291 -3.4812 26 6 -0.0389 -3.8404 -3.6914 27 6 -0.9496 -3.7156 -2.6590 28 6 -0.5298 -3.2799 -1.4160 29 1 -0.4850 -0.8362 -0.0797 30 1 2.5002 -2.5000 2.4654 31 1 5.7556 -4.7448 2.6525 32 1 5.3276 -3.1806 1.8332 33 1 7.6355 -2.8250 5.6367 34 1 2.7260 -3.8475 4.5627 35 1 3.9225 -5.2147 4.5756 36 1 2.7490 -2.8422 -2.0761 37 1 2.0029 -3.6269 -4.2878 38 1 -0.3668 -4.1814 -4.6624 39 1 -1.9889 -3.9591 -2.8231 40 1 -1.2413 -3.1825 -0.6093 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480334.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:21 Heat of formation + Delta-G solvation = -113.976593 kcal Electronic energy + Delta-G solvation = -24427.128582 eV Core-core repulsion = 20784.970990 eV Total energy + Delta-G solvation = -3642.157592 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.89454 -40.92948 -39.78594 -38.67954 -37.06103 -35.84138 -34.00036 -32.61848 -31.63002 -29.22568 -27.67815 -26.82035 -25.61299 -23.40398 -23.20343 -22.47912 -21.35016 -20.25155 -19.36502 -19.05906 -18.13716 -17.65908 -17.30117 -16.91087 -16.72534 -16.21080 -15.80203 -15.61513 -15.52243 -15.07898 -14.74162 -14.41455 -14.25703 -14.04183 -13.83469 -13.58628 -13.40041 -13.23379 -12.88584 -12.81111 -12.57169 -12.55623 -11.95547 -11.90938 -11.81847 -11.78117 -11.75552 -11.38287 -10.88284 -10.62694 -10.54656 -9.96055 -9.64768 -9.32967 -8.58482 -6.36239 0.66118 0.71803 1.12772 1.59363 1.64602 1.82678 1.84011 2.12074 2.36793 2.59958 3.10653 3.22633 3.28312 3.37541 3.74272 3.96877 4.11599 4.22373 4.26444 4.35589 4.40187 4.40951 4.57278 4.65207 4.68722 4.78678 4.84414 4.85257 4.91672 4.92879 5.07400 5.27057 5.33540 5.57783 5.65788 5.70662 5.73982 5.77045 6.06938 6.18017 6.32198 6.56004 6.69030 6.98695 7.41802 7.44916 8.79336 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.013793 B = 0.004476 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.486908 B = 6253.389401 C = 7589.585958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.008 4.008 3 Si 1.105 2.895 4 H -0.290 1.290 5 H -0.260 1.260 6 H -0.282 1.282 7 C -0.586 4.586 8 H 0.051 0.949 9 C 0.043 3.957 10 H 0.049 0.951 11 C 0.536 3.464 12 O -0.587 6.587 13 N -0.700 5.700 14 C 0.114 3.886 15 H 0.092 0.908 16 C -0.127 4.127 17 C -0.108 4.108 18 H 0.137 0.863 19 C 0.500 3.500 20 O -0.545 6.545 21 O -0.511 6.511 22 C -0.112 4.112 23 C -0.047 4.047 24 C -0.106 4.106 25 C -0.135 4.135 26 C -0.141 4.141 27 C -0.128 4.128 28 C -0.150 4.150 29 H 0.266 0.734 30 H 0.412 0.588 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.427 0.573 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.095 0.905 37 H 0.137 0.863 38 H 0.149 0.851 39 H 0.142 0.858 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.708 -4.589 5.420 10.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.210 4.210 3 Si 0.928 3.072 4 H -0.215 1.215 5 H -0.184 1.184 6 H -0.208 1.208 7 C -0.624 4.624 8 H 0.069 0.931 9 C 0.021 3.979 10 H 0.067 0.933 11 C 0.325 3.675 12 O -0.468 6.468 13 N -0.350 5.350 14 C 0.009 3.991 15 H 0.110 0.890 16 C -0.166 4.166 17 C -0.126 4.126 18 H 0.154 0.846 19 C 0.344 3.656 20 O -0.436 6.436 21 O -0.325 6.325 22 C -0.150 4.150 23 C -0.048 4.048 24 C -0.125 4.125 25 C -0.153 4.153 26 C -0.159 4.159 27 C -0.146 4.146 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.248 0.752 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.288 0.712 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.113 0.887 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.160 0.840 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.373 -3.840 5.022 9.712 hybrid contribution 0.462 -1.274 0.600 1.482 sum 7.834 -5.115 5.622 10.915 Atomic orbital electron populations 1.70864 1.07863 1.30959 1.46102 1.26973 0.96321 1.05483 0.92212 0.83068 0.74264 0.71862 0.77998 1.21536 1.18422 1.20757 1.21644 0.94247 0.90253 1.56218 0.93055 1.18110 0.95222 0.93556 0.90993 0.93332 1.21050 0.79637 0.86095 0.80709 1.90567 1.63445 1.30146 1.62641 1.45515 1.48576 1.22620 1.18318 1.21786 0.89922 0.93181 0.94252 0.89025 1.23341 0.97348 1.01286 0.94612 1.22597 0.92883 1.03551 0.93616 0.84555 1.23321 0.82223 0.77531 0.82566 1.90695 1.79391 1.33731 1.39779 1.84547 1.31705 1.56792 1.59407 1.23260 0.97518 1.00136 0.94095 1.20194 0.93576 0.94086 0.96929 1.20829 0.98727 0.99330 0.93567 1.21364 0.97132 1.00063 0.96709 1.21309 0.92962 1.01813 0.99838 1.21320 1.00524 0.99971 0.92746 1.21175 0.95417 1.01873 0.98410 0.92380 0.75197 0.87793 0.90442 0.71158 0.88816 0.87100 0.88684 0.84560 0.83378 0.84047 0.87295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.00 13.56 21.44 0.29 -50.71 16 2 C -0.01 -0.42 5.45 84.65 0.46 0.04 16 3 Si 1.11 45.59 29.91 68.60 2.05 47.65 16 4 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.26 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.59 -29.03 7.42 25.60 0.19 -28.84 16 8 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 9 C 0.04 2.01 1.92 -13.03 -0.03 1.98 16 10 H 0.05 2.41 6.82 -2.39 -0.02 2.40 16 11 C 0.54 23.21 7.04 87.66 0.62 23.83 16 12 O -0.59 -28.18 15.06 -3.05 -0.05 -28.23 16 13 N -0.70 -23.74 5.16 -440.04 -2.27 -26.01 16 14 C 0.11 3.17 4.32 45.52 0.20 3.36 16 15 H 0.09 2.83 7.46 -2.39 -0.02 2.82 16 16 C -0.13 -3.02 7.43 31.12 0.23 -2.78 16 17 C -0.11 -2.26 4.13 -11.02 -0.05 -2.30 16 18 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 19 C 0.50 10.59 7.86 71.24 0.56 11.15 16 20 O -0.55 -14.33 16.66 21.98 0.37 -13.96 16 21 O -0.51 -8.45 13.42 -51.37 -0.69 -9.13 16 22 C -0.11 -2.43 7.15 31.12 0.22 -2.21 16 23 C -0.05 -2.20 4.03 -19.87 -0.08 -2.28 16 24 C -0.11 -4.82 8.36 22.27 0.19 -4.64 16 25 C -0.13 -5.11 10.05 22.27 0.22 -4.88 16 26 C -0.14 -4.83 10.05 22.27 0.22 -4.61 16 27 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 28 C -0.15 -6.48 9.25 22.27 0.21 -6.28 16 29 H 0.27 14.78 6.30 -92.71 -0.58 14.19 16 30 H 0.41 13.01 8.59 -92.70 -0.80 12.21 16 31 H 0.10 2.19 8.10 -2.38 -0.02 2.17 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.43 3.18 9.10 -74.06 -0.67 2.50 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.11 2.35 7.44 -2.39 -0.02 2.34 16 36 H 0.09 4.49 7.86 -2.91 -0.02 4.47 16 37 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 38 H 0.15 3.82 8.06 -2.91 -0.02 3.79 16 39 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.11 4.52 7.96 -2.91 -0.02 4.50 16 Total: -1.00 -68.45 345.64 2.89 -65.56 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.20 Total: 37.72 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: 3.39 Total: -22.88 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.98 Total: -76.72 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.37 Total: -51.32 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.05 Total: 47.65 kcal Total: -68.45 2.89 -65.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480334.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.414 kcal (2) G-P(sol) polarization free energy of solvation -68.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds