Wall clock time and date at job start Tue Mar 31 2020 07:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86794 * 120.00491 * 2 1 4 4 H 1.48503 * 109.47246 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.47095 * 120.00267 * 3 2 1 6 6 H 1.48503 * 109.47205 * 239.99724 * 3 2 1 7 7 C 1.37885 * 119.99587 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99709 * 186.40114 * 7 2 1 9 9 C 1.50700 * 120.00046 * 6.40970 * 7 2 1 10 10 H 1.09001 * 109.47250 * 33.07399 * 9 7 2 11 11 C 1.50692 * 109.47314 * 153.07594 * 9 7 2 12 12 O 1.21287 * 120.00120 * 119.99706 * 11 9 7 13 13 N 1.34775 * 120.00063 * 299.99981 * 11 9 7 14 14 C 1.46500 * 120.00157 * 180.02562 * 13 11 9 15 15 H 1.09000 * 112.84843 * 336.18471 * 14 13 11 16 16 C 1.53772 * 113.61987 * 107.49840 * 14 13 11 17 17 C 1.53779 * 87.08551 * 89.11452 * 16 14 13 18 18 H 1.08999 * 113.61558 * 270.88778 * 17 16 14 19 19 C 1.50695 * 113.69493 * 139.99130 * 17 16 14 20 20 O 1.20829 * 120.00343 * 262.46745 * 19 17 16 21 21 O 1.34231 * 119.99845 * 82.46640 * 19 17 16 22 22 C 1.53781 * 113.61329 * 205.00030 * 14 13 11 23 23 C 1.50700 * 109.46544 * 273.07448 * 9 7 2 24 24 C 1.38233 * 120.00377 * 306.42556 * 23 9 7 25 25 C 1.38230 * 120.00286 * 179.74756 * 24 23 9 26 26 C 1.38242 * 119.99673 * 0.55116 * 25 24 23 27 27 C 1.38227 * 119.99972 * 359.69911 * 26 25 24 28 28 C 1.38233 * 120.00289 * 0.02877 * 27 26 25 29 29 H 0.96994 * 120.00652 * 175.60171 * 1 2 3 30 30 H 0.97000 * 120.00337 * 359.97438 * 13 11 9 31 31 H 1.09007 * 113.61807 * 203.66276 * 16 14 13 32 32 H 1.09004 * 113.61533 * 334.56562 * 16 14 13 33 33 H 0.96701 * 116.99669 * 180.02562 * 21 19 17 34 34 H 1.08994 * 113.61763 * 25.42156 * 22 14 13 35 35 H 1.09006 * 113.61625 * 156.25141 * 22 14 13 36 36 H 1.08001 * 119.99863 * 359.97438 * 24 23 9 37 37 H 1.08003 * 120.00601 * 180.27518 * 25 24 23 38 38 H 1.08007 * 119.99850 * 179.72689 * 26 25 24 39 39 H 1.08002 * 119.99797 * 179.97438 * 27 26 25 40 40 H 1.08000 * 120.00138 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1030 1.6962 1.2125 6 1 3.1030 1.6962 -1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0794 -1.1971 0.1048 9 6 1.2579 -2.4952 -0.1446 10 1 0.3887 -2.3459 -0.7852 11 6 2.1648 -3.5287 -0.7613 12 8 2.4193 -4.5496 -0.1580 13 7 2.6932 -3.3185 -1.9832 14 6 3.5744 -4.3234 -2.5830 15 1 4.0533 -4.9630 -1.8416 16 6 2.9256 -5.0991 -3.7414 17 6 3.4586 -3.9981 -4.6734 18 1 2.7713 -3.1615 -4.7986 19 6 3.9913 -4.5189 -5.9833 20 8 5.1779 -4.6983 -6.1245 21 8 3.1477 -4.7836 -6.9932 22 6 4.5511 -3.7456 -3.6208 23 6 0.8062 -2.9691 1.2128 24 6 1.7224 -3.0999 2.2395 25 6 1.3072 -3.5296 3.4860 26 6 -0.0226 -3.8394 3.7026 27 6 -0.9379 -3.7135 2.6745 28 6 -0.5236 -3.2785 1.4296 29 1 -0.4851 -0.8375 -0.0644 30 1 2.4894 -2.5021 -2.4659 31 1 3.3750 -6.0763 -3.9184 32 1 1.8376 -5.1361 -3.6869 33 1 3.5361 -5.1163 -7.8139 34 1 4.7753 -2.6898 -3.4690 35 1 5.4455 -4.3520 -3.7638 36 1 2.7622 -2.8629 2.0688 37 1 2.0223 -3.6276 4.2894 38 1 -0.3463 -4.1794 4.6753 39 1 -1.9767 -3.9560 2.8437 40 1 -1.2387 -3.1805 0.6262 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480335.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:24 Heat of formation + Delta-G solvation = -94.029793 kcal Electronic energy + Delta-G solvation = -24359.799106 eV Core-core repulsion = 20718.506472 eV Total energy + Delta-G solvation = -3641.292633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.89132 -39.50160 -38.45081 -37.28566 -36.19167 -34.01393 -32.55614 -30.88758 -30.04684 -27.70163 -26.45567 -25.84306 -23.77754 -22.18469 -21.66087 -21.13787 -19.77059 -19.14182 -18.31681 -17.53910 -16.91921 -16.23657 -15.92580 -15.68648 -15.51753 -14.72672 -14.41106 -14.03971 -13.86253 -13.70077 -13.59551 -13.01486 -12.66150 -12.60585 -12.45738 -12.27007 -12.09002 -11.85749 -11.71120 -11.58386 -11.02303 -10.89921 -10.80798 -10.73099 -10.40795 -10.32021 -10.23839 -10.17389 -9.05234 -8.89360 -8.65167 -8.54552 -8.04723 -7.68358 -6.60743 -4.36796 2.01396 2.26148 2.30949 2.89368 3.31535 3.33361 3.48287 3.52511 3.75006 4.25085 4.35513 4.36423 4.72789 4.81351 4.88747 5.13253 5.19103 5.54009 5.59580 5.64106 5.67117 5.74713 5.80435 5.83469 5.88657 5.94646 6.05818 6.25191 6.31214 6.37565 6.43780 6.57703 6.84743 6.94479 7.05225 7.26907 7.33098 7.54729 7.72213 7.79170 7.92149 8.14305 8.19496 8.56592 9.04378 9.35327 10.78028 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.004337 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.130748 B = 6453.817086 C = 7756.222592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.032 3.968 3 Si 1.068 2.932 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.595 4.595 8 H 0.058 0.942 9 C 0.044 3.956 10 H 0.065 0.935 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.713 5.713 14 C 0.127 3.873 15 H 0.106 0.894 16 C -0.134 4.134 17 C -0.113 4.113 18 H 0.127 0.873 19 C 0.490 3.510 20 O -0.518 6.518 21 O -0.515 6.515 22 C -0.127 4.127 23 C -0.019 4.019 24 C -0.078 4.078 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.129 4.129 28 C -0.127 4.127 29 H 0.273 0.727 30 H 0.406 0.594 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.406 0.594 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.336 -6.616 -7.689 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.175 4.175 3 Si 0.895 3.105 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.211 1.211 7 C -0.633 4.633 8 H 0.077 0.923 9 C 0.023 3.977 10 H 0.083 0.917 11 C 0.326 3.674 12 O -0.438 6.438 13 N -0.365 5.365 14 C 0.020 3.980 15 H 0.124 0.876 16 C -0.173 4.173 17 C -0.132 4.132 18 H 0.144 0.856 19 C 0.333 3.667 20 O -0.406 6.406 21 O -0.327 6.327 22 C -0.165 4.165 23 C -0.020 4.020 24 C -0.096 4.096 25 C -0.151 4.151 26 C -0.164 4.164 27 C -0.147 4.147 28 C -0.145 4.145 29 H 0.085 0.915 30 H 0.241 0.759 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.105 0.895 35 H 0.123 0.877 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.126 0.874 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.447 -5.593 -6.853 9.493 hybrid contribution 0.315 -1.401 -0.920 1.705 sum 3.762 -6.994 -7.773 11.112 Atomic orbital electron populations 1.70793 1.06841 1.31418 1.43502 1.25860 0.96335 1.02568 0.92767 0.83535 0.74979 0.75128 0.76818 1.20649 1.21257 1.21141 1.21539 0.94758 0.89364 1.57591 0.92340 1.18158 0.95574 0.93441 0.90546 0.91718 1.21366 0.79693 0.86792 0.79519 1.90598 1.61837 1.29411 1.61932 1.45651 1.49628 1.21891 1.19314 1.21602 0.91075 0.91340 0.93947 0.87581 1.23425 1.02459 0.96942 0.94494 1.22653 1.01392 1.01643 0.87480 0.85551 1.23483 0.84327 0.73489 0.85384 1.90703 1.17834 1.49608 1.82438 1.84591 1.44403 1.78111 1.25566 1.23369 0.97057 1.03685 0.92406 1.20086 0.92509 0.92476 0.96951 1.20787 0.99467 0.97271 0.92097 1.20989 0.95648 1.01365 0.97074 1.20828 0.93796 1.03439 0.98334 1.20881 0.98522 1.01562 0.93727 1.20959 0.95907 1.00776 0.96884 0.91501 0.75859 0.89037 0.89650 0.73534 0.89463 0.87667 0.86995 0.87403 0.87518 0.87406 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.08 13.63 55.43 0.76 -23.33 16 2 C 0.03 0.81 5.45 -17.82 -0.10 0.71 16 3 Si 1.07 22.82 29.91 -169.99 -5.08 17.74 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.29 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.60 -14.49 7.45 -34.44 -0.26 -14.74 16 8 H 0.06 1.45 7.82 -52.49 -0.41 1.04 16 9 C 0.04 1.00 1.94 -94.08 -0.18 0.82 16 10 H 0.07 1.51 6.63 -51.93 -0.34 1.17 16 11 C 0.54 11.25 7.04 -10.99 -0.08 11.17 16 12 O -0.56 -13.01 15.03 5.55 0.08 -12.93 16 13 N -0.71 -11.92 5.16 -53.02 -0.27 -12.20 16 14 C 0.13 1.77 4.32 -67.12 -0.29 1.48 16 15 H 0.11 1.64 7.46 -51.93 -0.39 1.25 16 16 C -0.13 -1.57 7.43 -25.92 -0.19 -1.76 16 17 C -0.11 -1.23 4.13 -90.96 -0.38 -1.61 16 18 H 0.13 1.27 8.14 -51.93 -0.42 0.84 16 19 C 0.49 5.54 7.86 36.00 0.28 5.82 16 20 O -0.52 -7.20 16.66 -18.75 -0.31 -7.51 16 21 O -0.52 -4.64 13.42 -39.26 -0.53 -5.17 16 22 C -0.13 -1.49 7.15 -25.91 -0.19 -1.67 16 23 C -0.02 -0.44 4.17 -104.62 -0.44 -0.88 16 24 C -0.08 -1.75 8.33 -39.59 -0.33 -2.08 16 25 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 26 C -0.15 -2.70 10.05 -39.58 -0.40 -3.09 16 27 C -0.13 -2.46 10.05 -39.59 -0.40 -2.86 16 28 C -0.13 -2.71 9.50 -39.58 -0.38 -3.08 16 29 H 0.27 7.30 6.49 -40.82 -0.26 7.03 16 30 H 0.41 6.37 8.59 -40.82 -0.35 6.02 16 31 H 0.09 0.98 8.10 -51.92 -0.42 0.56 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.41 1.88 9.10 45.56 0.41 2.30 16 34 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.10 1.22 7.44 -51.93 -0.39 0.84 16 36 H 0.11 2.56 7.88 -52.49 -0.41 2.15 16 37 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.11 2.17 7.96 -52.49 -0.42 1.75 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -31.43 346.12 -8.17 -39.59 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -4.31 Total: 13.37 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: -3.71 Total: -14.78 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.48 Total: -35.52 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: -0.76 Total: -25.61 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.08 Total: 17.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.43 -8.17 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480335.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.437 kcal (2) G-P(sol) polarization free energy of solvation -31.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds