Wall clock time and date at job start Tue Mar 31 2020 08:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00165 * 2 1 4 4 N 1.46503 * 109.47389 * 124.70758 * 3 2 1 5 5 C 1.46497 * 119.99798 * 94.71690 * 4 3 2 6 6 C 1.50697 * 109.47217 * 84.38211 * 5 4 3 7 7 H 1.08002 * 120.00089 * 359.97438 * 6 5 4 8 8 C 1.37883 * 120.00031 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99862 * 179.97438 * 8 6 5 10 10 Si 1.86791 * 120.00042 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46908 * 269.99804 * 10 8 6 12 12 H 1.48500 * 109.47449 * 29.99876 * 10 8 6 13 13 H 1.48501 * 109.47365 * 150.00033 * 10 8 6 14 14 C 1.34776 * 120.00055 * 274.72229 * 4 3 2 15 15 O 1.21284 * 119.99714 * 4.89956 * 14 4 3 16 16 C 1.50692 * 120.00172 * 184.90328 * 14 4 3 17 17 H 1.09004 * 109.70674 * 314.21705 * 16 14 4 18 18 C 1.53467 * 109.71058 * 74.80266 * 16 14 4 19 19 O 1.43178 * 108.23915 * 179.42143 * 18 16 14 20 20 C 1.36104 * 116.70702 * 313.76817 * 19 18 16 21 21 C 1.38704 * 119.40229 * 197.25932 * 20 19 18 22 22 C 1.38199 * 120.06782 * 180.10742 * 21 20 19 23 23 C 1.38253 * 120.11377 * 0.02562 * 22 21 20 24 24 C 1.38197 * 120.11389 * 359.97438 * 23 22 21 25 25 C 1.38703 * 120.06503 * 359.91619 * 24 23 22 26 26 O 1.36109 * 119.39891 * 180.37058 * 25 24 23 27 27 H 1.08011 * 119.99623 * 5.02293 * 1 2 3 28 28 H 1.07998 * 120.00691 * 185.02944 * 1 2 3 29 29 H 1.07997 * 119.99960 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47638 * 4.70449 * 3 2 1 31 31 H 1.09003 * 109.47090 * 244.70776 * 3 2 1 32 32 H 1.09002 * 109.47881 * 324.37661 * 5 4 3 33 33 H 1.09012 * 109.47071 * 204.37552 * 5 4 3 34 34 H 0.97000 * 119.99845 * 180.02562 * 9 8 6 35 35 H 1.08994 * 109.71270 * 299.11262 * 18 16 14 36 36 H 1.09007 * 109.70515 * 59.69594 * 18 16 14 37 37 H 1.07998 * 119.96571 * 0.13585 * 21 20 19 38 38 H 1.07996 * 119.93767 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.94256 * 179.97438 * 23 22 21 40 40 H 1.07993 * 119.97180 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9888 1.3348 1.1355 5 6 4.3836 0.9250 0.9546 6 6 5.1868 2.0908 0.4382 7 1 4.7062 3.0418 0.2619 8 6 6.5352 1.9434 0.1907 9 7 7.2360 2.9607 -0.2604 10 14 7.3665 0.2988 0.4963 11 1 7.8705 0.2508 1.8924 12 1 6.3873 -0.7976 0.2855 13 1 8.5026 0.1357 -0.4460 14 6 2.5568 1.7390 2.3464 15 8 1.3833 1.9931 2.5178 16 6 3.5317 1.8754 3.4873 17 1 4.1780 0.9984 3.5254 18 6 4.3829 3.1375 3.2927 19 8 5.2866 3.2434 4.3983 20 6 4.7607 3.0509 5.6387 21 6 5.4662 3.4829 6.7520 22 6 4.9461 3.2924 8.0182 23 6 3.7219 2.6705 8.1789 24 6 3.0137 2.2377 7.0739 25 6 3.5289 2.4278 5.8002 26 8 2.8165 2.0030 4.7211 27 1 -0.5400 0.9318 -0.0819 28 1 -0.5401 -0.9316 0.0820 29 1 1.8499 -0.9353 -0.0004 30 1 1.3583 2.1319 0.0843 31 1 2.6254 1.4002 -0.9292 32 1 4.4315 0.1049 0.2381 33 1 4.7927 0.5968 1.9102 34 1 8.1845 2.8569 -0.4348 35 1 4.9468 3.0609 2.3631 36 1 3.7370 4.0150 3.2596 37 1 6.4228 3.9690 6.6293 38 1 5.4971 3.6300 8.8835 39 1 3.3182 2.5228 9.1697 40 1 2.0578 1.7519 7.2021 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292455708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:38 Heat of formation + Delta-G solvation = -63.222547 kcal Electronic energy + Delta-G solvation = -25239.389495 eV Core-core repulsion = 21599.432764 eV Total energy + Delta-G solvation = -3639.956731 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.55138 -40.85051 -38.56178 -38.37011 -37.23434 -35.28458 -34.18393 -32.35938 -31.63075 -30.07171 -29.70448 -27.49959 -25.90906 -24.59951 -23.78838 -22.46935 -21.03785 -20.36427 -19.79077 -19.14535 -18.88614 -18.24037 -17.50481 -17.12213 -16.73079 -16.26133 -16.03801 -15.72897 -15.66815 -15.52389 -15.14274 -14.90885 -14.80888 -14.66239 -14.35369 -14.20340 -13.75509 -13.24420 -13.06368 -12.82139 -12.76367 -12.52887 -12.35670 -12.28763 -12.16690 -12.00064 -11.73743 -11.57734 -11.02345 -10.78503 -10.29451 -9.68053 -9.65609 -9.11764 -8.34249 -6.41714 0.28974 0.30370 1.11349 1.28866 1.38371 1.41262 1.47757 1.63737 2.08485 2.30940 2.55124 2.74022 2.99007 3.11468 3.31662 3.52185 3.58393 3.99936 4.07989 4.12262 4.17069 4.27197 4.40585 4.45849 4.48218 4.54001 4.71372 4.72264 4.81517 4.86761 5.01168 5.19647 5.21641 5.33826 5.46425 5.49345 5.65430 5.71871 5.79057 5.86757 6.05985 6.33428 6.38873 6.62893 6.95889 7.23357 8.79887 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.011485 B = 0.006167 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2437.409954 B = 4539.232215 C = 6407.365660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.184 4.184 3 C 0.145 3.855 4 N -0.577 5.577 5 C 0.205 3.795 6 C -0.545 4.545 7 H 0.048 0.952 8 C 0.035 3.965 9 N -0.927 5.927 10 Si 0.924 3.076 11 H -0.269 1.269 12 H -0.236 1.236 13 H -0.283 1.283 14 C 0.528 3.472 15 O -0.560 6.560 16 C 0.047 3.953 17 H 0.111 0.889 18 C 0.030 3.970 19 O -0.313 6.313 20 C 0.015 3.985 21 C -0.124 4.124 22 C -0.106 4.106 23 C -0.107 4.107 24 C -0.121 4.121 25 C 0.019 3.981 26 O -0.305 6.305 27 H 0.095 0.905 28 H 0.118 0.882 29 H 0.117 0.883 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.058 0.942 33 H 0.040 0.960 34 H 0.270 0.730 35 H 0.155 0.845 36 H 0.063 0.937 37 H 0.144 0.856 38 H 0.171 0.829 39 H 0.172 0.828 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.387 -4.900 11.853 13.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C 0.024 3.976 4 N -0.308 5.308 5 C 0.084 3.916 6 C -0.583 4.583 7 H 0.066 0.934 8 C -0.167 4.167 9 N -0.564 5.564 10 Si 0.747 3.253 11 H -0.194 1.194 12 H -0.159 1.159 13 H -0.209 1.209 14 C 0.314 3.686 15 O -0.439 6.439 16 C -0.013 4.013 17 H 0.128 0.872 18 C -0.045 4.045 19 O -0.228 6.228 20 C -0.029 4.029 21 C -0.143 4.143 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.140 4.140 25 C -0.025 4.025 26 O -0.220 6.220 27 H 0.113 0.887 28 H 0.136 0.864 29 H 0.135 0.865 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.172 0.828 36 H 0.081 0.919 37 H 0.162 0.838 38 H 0.188 0.812 39 H 0.189 0.811 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -5.819 -4.712 11.785 13.962 hybrid contribution 0.736 -0.253 -0.754 1.083 sum -5.083 -4.964 11.031 13.121 Atomic orbital electron populations 1.23983 0.95433 1.02712 0.97982 1.23237 0.96704 0.98206 1.02160 1.20559 0.91994 0.96288 0.88785 1.47835 1.12136 1.63070 1.07730 1.19917 0.77370 0.96154 0.98181 1.21344 0.93831 0.97564 1.45530 0.93378 1.25609 0.97763 0.99793 0.93510 1.70003 1.08688 1.32942 1.44809 0.86058 0.79442 0.80992 0.78804 1.19365 1.15939 1.20860 1.19641 0.87713 0.77511 0.83744 1.90634 1.18191 1.51698 1.83380 1.22820 0.93505 1.01047 0.83962 0.87169 1.23957 0.93972 0.95298 0.91305 1.86385 1.36445 1.87364 1.12572 1.19577 0.95101 1.01583 0.86690 1.20823 1.01428 1.01762 0.90288 1.21380 0.96163 0.98617 0.96228 1.21365 0.94528 0.97720 0.98836 1.20781 1.02175 1.02722 0.88283 1.19491 0.93248 1.00992 0.88785 1.86276 1.36625 1.83113 1.15955 0.88667 0.86379 0.86520 0.91148 0.88517 0.92425 0.94207 0.92033 0.82794 0.91860 0.83848 0.81194 0.81097 0.83801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.24 14.31 67.78 0.97 -3.27 16 2 C -0.18 -5.41 9.81 25.65 0.25 -5.16 16 3 C 0.15 5.02 5.78 85.63 0.50 5.51 16 4 N -0.58 -22.66 2.45 -830.50 -2.04 -24.70 16 5 C 0.21 8.35 3.85 85.63 0.33 8.68 16 6 C -0.54 -26.64 7.22 25.60 0.18 -26.46 16 7 H 0.05 2.67 7.93 -2.91 -0.02 2.65 16 8 C 0.03 1.77 5.47 84.66 0.46 2.24 16 9 N -0.93 -51.99 13.96 21.45 0.30 -51.69 16 10 Si 0.92 38.25 27.47 68.60 1.88 40.14 16 11 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 12 H -0.24 -8.71 6.54 99.48 0.65 -8.06 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 14 C 0.53 22.14 6.95 87.65 0.61 22.75 16 15 O -0.56 -25.79 16.28 15.47 0.25 -25.54 16 16 C 0.05 1.87 2.64 30.00 0.08 1.95 16 17 H 0.11 4.23 6.48 -2.39 -0.02 4.21 16 18 C 0.03 1.26 6.45 72.14 0.46 1.73 16 19 O -0.31 -12.82 10.42 -82.51 -0.86 -13.68 16 20 C 0.02 0.54 6.49 22.56 0.15 0.69 16 21 C -0.12 -3.41 9.96 22.37 0.22 -3.19 16 22 C -0.11 -2.10 10.04 22.26 0.22 -1.88 16 23 C -0.11 -2.09 10.04 22.26 0.22 -1.86 16 24 C -0.12 -3.26 9.96 22.37 0.22 -3.03 16 25 C 0.02 0.68 6.49 22.56 0.15 0.83 16 26 O -0.31 -12.30 9.65 -69.17 -0.67 -12.96 16 27 H 0.09 2.48 7.86 -2.90 -0.02 2.46 16 28 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 29 H 0.12 3.18 8.06 -2.91 -0.02 3.15 16 30 H 0.07 2.51 7.30 -2.39 -0.02 2.49 16 31 H 0.10 3.25 8.04 -2.39 -0.02 3.23 16 32 H 0.06 2.20 7.17 -2.39 -0.02 2.18 16 33 H 0.04 1.57 5.33 -2.38 -0.01 1.56 16 34 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 35 H 0.15 7.11 4.59 -2.39 -0.01 7.10 16 36 H 0.06 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.14 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 39 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 40 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -64.88 335.93 4.90 -59.98 By element: Atomic # 1 Polarization: 27.95 SS G_CDS: 1.00 Total: 28.94 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 5.03 Total: -0.50 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.74 Total: -76.39 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.28 Total: -52.18 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 1.88 Total: 40.14 kcal Total: -64.88 4.90 -59.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292455708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.240 kcal (2) G-P(sol) polarization free energy of solvation -64.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds