Wall clock time and date at job start Tue Mar 31 2020 08:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46895 * 2 1 4 4 C 1.36570 * 119.99579 * 264.39022 * 3 2 1 5 5 H 1.08000 * 120.00174 * 142.59819 * 4 3 2 6 6 C 1.39231 * 120.00178 * 322.59828 * 4 3 2 7 7 N 1.31253 * 120.00126 * 159.25461 * 6 4 3 8 8 Si 1.86805 * 120.00066 * 339.25305 * 6 4 3 9 9 H 1.48496 * 109.46925 * 95.25837 * 8 6 4 10 10 H 1.48501 * 109.47079 * 215.25531 * 8 6 4 11 11 H 1.48497 * 109.47030 * 335.26014 * 8 6 4 12 12 C 1.34767 * 120.00143 * 84.39315 * 3 2 1 13 13 O 1.21746 * 120.00191 * 179.97438 * 12 3 2 14 14 C 1.46370 * 119.99898 * 0.27030 * 12 3 2 15 15 C 1.34962 * 119.99812 * 172.60694 * 14 12 3 16 16 C 1.47140 * 120.00154 * 349.09507 * 15 14 12 17 17 C 1.39968 * 120.02158 * 316.12321 * 16 15 14 18 18 C 1.37112 * 119.97663 * 179.76287 * 17 16 15 19 19 C 1.39775 * 120.02220 * 0.48676 * 18 17 16 20 20 C 1.47694 * 119.98161 * 179.74185 * 19 18 17 21 21 O 1.21475 * 120.00611 * 180.02562 * 20 19 18 22 22 O 1.34730 * 119.99421 * 0.02562 * 20 19 18 23 23 C 1.45205 * 116.99910 * 179.97438 * 22 20 19 24 24 C 1.39777 * 120.04573 * 359.76434 * 19 18 17 25 25 C 1.37119 * 120.02184 * 0.02562 * 24 19 18 26 26 H 1.08998 * 109.46910 * 300.00261 * 1 2 3 27 27 H 1.09002 * 109.47190 * 60.00171 * 1 2 3 28 28 H 1.09001 * 109.47313 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46910 * 239.99739 * 2 1 3 30 30 H 1.08996 * 109.46876 * 119.99568 * 2 1 3 31 31 H 0.97003 * 120.00364 * 179.97438 * 7 6 4 32 32 H 1.07993 * 119.99998 * 352.61055 * 14 12 3 33 33 H 1.07999 * 119.99558 * 169.08733 * 15 14 12 34 34 H 1.07992 * 120.01017 * 359.97438 * 17 16 15 35 35 H 1.07991 * 119.99175 * 180.20834 * 18 17 16 36 36 H 1.08997 * 109.46961 * 300.00163 * 23 22 20 37 37 H 1.09001 * 109.47117 * 59.99938 * 23 22 20 38 38 H 1.09001 * 109.47426 * 179.97438 * 23 22 20 39 39 H 1.07997 * 119.99026 * 179.97438 * 24 19 18 40 40 H 1.08000 * 120.00654 * 180.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3549 1.9865 -1.1771 5 1 2.1352 3.0330 -1.3284 6 6 2.9813 1.2543 -2.1822 7 7 2.9435 1.6783 -3.4237 8 14 3.8756 -0.3314 -1.7635 9 1 2.9676 -1.4852 -1.9857 10 1 5.0723 -0.4689 -2.6320 11 1 4.2978 -0.3007 -0.3402 12 6 2.1354 2.0546 1.1615 13 8 2.5416 3.2023 1.1616 14 6 1.7804 1.4039 2.4236 15 6 2.0366 2.0208 3.5963 16 6 2.8812 3.2253 3.6248 17 6 4.0625 3.2702 2.8754 18 6 4.8464 4.3950 2.8988 19 6 4.4714 5.4926 3.6787 20 6 5.3193 6.7015 3.7077 21 8 4.9941 7.6556 4.3857 22 8 6.4537 6.7462 2.9821 23 6 7.2373 7.9662 3.0582 24 6 3.2946 5.4468 4.4316 25 6 2.5071 4.3246 4.4062 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.3803 1.1684 -4.1239 32 1 1.3134 0.4302 2.4165 33 1 1.6217 1.6304 4.5138 34 1 4.3547 2.4206 2.2762 35 1 5.7561 4.4311 2.3180 36 1 6.6354 8.8067 2.7128 37 1 7.5429 8.1380 4.0903 38 1 8.1221 7.8697 2.4290 39 1 3.0059 6.2953 5.0342 40 1 1.5977 4.2897 4.9877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491275607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:18 Heat of formation + Delta-G solvation = -48.393745 kcal Electronic energy + Delta-G solvation = -24413.309942 eV Core-core repulsion = 20773.996236 eV Total energy + Delta-G solvation = -3639.313706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.37483 -39.37050 -38.18602 -36.30673 -35.39352 -33.40937 -32.39852 -30.81409 -29.91215 -29.81825 -27.65909 -25.73929 -23.91531 -23.03921 -22.26471 -21.60124 -20.41428 -18.23560 -17.76064 -17.15917 -16.96865 -16.58966 -16.23466 -15.80634 -14.83636 -14.69864 -14.46364 -14.02187 -13.63387 -13.54103 -13.35652 -13.18394 -13.15393 -12.90507 -12.57872 -12.38994 -12.20167 -12.08863 -11.89487 -11.60399 -11.29754 -11.03917 -10.83059 -10.78256 -10.76263 -10.36585 -10.20582 -9.96917 -9.59530 -9.15911 -8.83169 -8.51232 -7.83717 -7.63254 -6.52898 -4.02419 0.70696 1.83751 1.87757 2.81049 2.88270 2.95803 3.14933 3.16670 4.02219 4.17426 4.19741 4.38564 4.87586 4.91695 5.05571 5.07790 5.14766 5.15356 5.27643 5.38572 5.43706 5.47155 5.67796 5.68876 5.80512 5.82471 5.88025 6.09236 6.15485 6.27320 6.32176 6.35800 6.46733 6.52966 6.64145 6.67395 6.77272 6.96628 7.22157 7.44404 7.87345 8.20685 8.42859 8.88030 9.20738 9.72990 10.58393 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.016577 B = 0.004259 C = 0.003631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.673634 B = 6572.903704 C = 7708.772292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 N -0.446 5.446 4 C -0.309 4.309 5 H 0.108 0.892 6 C 0.060 3.940 7 N -0.853 5.853 8 Si 0.878 3.122 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.262 1.262 12 C 0.469 3.531 13 O -0.553 6.553 14 C -0.167 4.167 15 C -0.089 4.089 16 C -0.004 4.004 17 C -0.044 4.044 18 C -0.071 4.071 19 C -0.135 4.135 20 C 0.513 3.487 21 O -0.518 6.518 22 O -0.354 6.354 23 C 0.037 3.963 24 C -0.067 4.067 25 C -0.126 4.126 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.276 0.724 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.129 0.871 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.161 -0.767 13.217 13.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.043 4.043 3 N -0.165 5.165 4 C -0.437 4.437 5 H 0.125 0.875 6 C -0.147 4.147 7 N -0.489 5.489 8 Si 0.706 3.294 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.186 1.186 12 C 0.260 3.740 13 O -0.437 6.437 14 C -0.188 4.188 15 C -0.110 4.110 16 C -0.004 4.004 17 C -0.063 4.063 18 C -0.089 4.089 19 C -0.136 4.136 20 C 0.360 3.640 21 O -0.409 6.409 22 O -0.270 6.270 23 C -0.057 4.057 24 C -0.086 4.086 25 C -0.144 4.144 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.142 0.858 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.147 0.853 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.354 0.080 13.112 13.322 hybrid contribution 0.364 -0.814 -0.216 0.917 sum 2.718 -0.734 12.897 13.200 Atomic orbital electron populations 1.22150 0.95987 1.01091 1.02878 1.21916 0.94918 0.85880 1.01546 1.43725 1.55229 1.11186 1.06399 1.19085 1.37462 0.98265 0.88839 0.87481 1.25445 0.96194 0.98366 0.94697 1.69675 1.39743 1.39833 0.99604 0.86932 0.79962 0.82858 0.79689 1.20115 1.21242 1.18639 1.18165 0.84119 0.88150 0.83543 1.90755 1.49390 1.17707 1.85866 1.23510 1.01846 0.99689 0.93763 1.22131 0.97120 0.94273 0.97448 1.19131 0.93653 0.93590 0.94045 1.20980 0.92768 0.98425 0.94079 1.21057 0.99658 0.92026 0.96169 1.18985 0.96944 0.92813 1.04896 1.21404 0.79280 0.87476 0.75839 1.90780 1.71859 1.37624 1.40617 1.86594 1.34711 1.41191 1.64513 1.23237 0.94727 0.85015 1.02687 1.20785 0.92444 0.98060 0.97265 1.20916 0.99821 0.92981 1.00675 0.92741 0.91458 0.92602 0.90811 0.91852 0.91322 0.85776 0.85206 0.85811 0.85123 0.91936 0.92083 0.88123 0.85317 0.85616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 10.04 37.16 0.37 -2.21 16 2 C 0.08 1.52 4.32 -4.04 -0.02 1.50 16 3 N -0.45 -10.24 2.19 -116.42 -0.25 -10.50 16 4 C -0.31 -8.38 9.37 -15.07 -0.14 -8.52 16 5 H 0.11 3.31 7.90 -52.49 -0.41 2.90 16 6 C 0.06 1.60 5.30 -17.43 -0.09 1.50 16 7 N -0.85 -23.81 13.95 55.51 0.77 -23.04 16 8 Si 0.88 19.61 24.93 -169.99 -4.24 15.37 16 9 H -0.27 -5.68 6.69 56.52 0.38 -5.31 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 12 C 0.47 10.28 6.55 -12.99 -0.09 10.20 16 13 O -0.55 -13.83 12.04 5.15 0.06 -13.77 16 14 C -0.17 -2.75 8.62 -37.48 -0.32 -3.08 16 15 C -0.09 -1.30 9.80 -37.13 -0.36 -1.66 16 16 C 0.00 -0.06 4.54 -104.99 -0.48 -0.54 16 17 C -0.04 -0.80 6.56 -39.34 -0.26 -1.06 16 18 C -0.07 -1.23 9.58 -39.42 -0.38 -1.60 16 19 C -0.14 -2.29 5.88 -104.88 -0.62 -2.90 16 20 C 0.51 8.55 7.89 34.59 0.27 8.82 16 21 O -0.52 -9.28 16.12 -19.25 -0.31 -9.59 16 22 O -0.35 -5.27 9.80 -40.58 -0.40 -5.67 16 23 C 0.04 0.40 10.57 101.05 1.07 1.47 16 24 C -0.07 -1.05 9.55 -39.41 -0.38 -1.43 16 25 C -0.13 -1.88 9.75 -39.34 -0.38 -2.27 16 26 H 0.05 0.80 7.41 -51.93 -0.38 0.42 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.48 3.41 -51.93 -0.18 1.31 16 30 H 0.06 1.00 6.53 -51.93 -0.34 0.66 16 31 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.12 1.67 6.03 -52.49 -0.32 1.36 16 33 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.12 2.36 7.02 -52.49 -0.37 2.00 16 35 H 0.13 2.12 7.59 -52.49 -0.40 1.72 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.13 1.84 7.63 -52.49 -0.40 1.44 16 40 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -32.12 336.89 -6.00 -38.12 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.92 Total: 5.77 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -1.80 Total: -1.78 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.52 Total: -33.54 kcal Atomic # 8 Polarization: -28.38 SS G_CDS: -0.65 Total: -29.02 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.24 Total: 15.37 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.12 -6.00 -38.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491275607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.272 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds