Wall clock time and date at job start Tue Mar 31 2020 08:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.47028 * 2 1 4 4 C 1.50703 * 109.46959 * 240.00973 * 2 1 3 5 5 H 1.08004 * 119.99320 * 275.04712 * 4 2 1 6 6 C 1.37873 * 120.00175 * 95.32286 * 4 2 1 7 7 N 1.31521 * 119.99903 * 184.55512 * 6 4 2 8 8 Si 1.86793 * 120.00274 * 4.55963 * 6 4 2 9 9 H 1.48504 * 109.47145 * 85.11704 * 8 6 4 10 10 H 1.48497 * 109.47229 * 205.11827 * 8 6 4 11 11 H 1.48504 * 109.47125 * 325.12116 * 8 6 4 12 12 C 1.50697 * 109.47259 * 120.00462 * 2 1 3 13 13 O 1.21284 * 119.99523 * 119.99890 * 12 2 1 14 14 N 1.34775 * 120.00047 * 299.99675 * 12 2 1 15 15 C 1.46503 * 119.99820 * 180.02562 * 14 12 2 16 16 H 1.09000 * 110.26410 * 325.69884 * 15 14 12 17 17 C 1.54347 * 110.29939 * 203.63053 * 15 14 12 18 18 C 1.54345 * 102.38764 * 267.42161 * 17 15 14 19 19 H 1.09004 * 110.30499 * 92.68156 * 18 17 15 20 20 C 1.50699 * 110.30366 * 214.73132 * 18 17 15 21 21 O 1.20833 * 119.99843 * 359.97438 * 20 18 17 22 22 O 1.34231 * 120.00171 * 180.02562 * 20 18 17 23 23 C 1.51369 * 105.17385 * 333.65624 * 18 17 15 24 24 C 1.38496 * 130.39317 * 197.20574 * 23 18 17 25 25 C 1.38095 * 120.21453 * 179.97438 * 24 23 18 26 26 C 1.38263 * 119.93818 * 359.97438 * 25 24 23 27 27 C 1.38099 * 119.92900 * 0.02562 * 26 25 24 28 28 C 1.38306 * 120.28455 * 359.97361 * 27 26 25 29 29 H 1.09002 * 109.47159 * 305.12993 * 1 2 3 30 30 H 1.09000 * 109.47373 * 65.12739 * 1 2 3 31 31 H 1.09000 * 109.47220 * 185.12806 * 1 2 3 32 32 H 0.97003 * 119.99882 * 180.02562 * 7 6 4 33 33 H 0.97004 * 119.99941 * 0.02562 * 14 12 2 34 34 H 1.09000 * 110.82420 * 25.64650 * 17 15 14 35 35 H 1.09001 * 110.81979 * 149.20301 * 17 15 14 36 36 H 0.96708 * 116.99511 * 180.02562 * 22 20 18 37 37 H 1.08000 * 119.89607 * 0.02562 * 24 23 18 38 38 H 1.08004 * 120.03462 * 180.02562 * 25 24 23 39 39 H 1.07996 * 120.03106 * 180.02562 * 26 25 24 40 40 H 1.08000 * 119.88886 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.1347 -1.7854 -1.2295 6 6 2.3665 0.0130 -2.3558 7 7 2.7191 -0.6116 -3.4583 8 14 2.3187 1.8799 -2.3146 9 1 3.6036 2.3962 -1.7780 10 1 2.1119 2.4003 -3.6899 11 1 1.2028 2.3273 -1.4430 12 6 2.0324 -0.7105 1.2304 13 8 2.7296 -1.6966 1.1189 14 7 1.7069 -0.2501 2.4545 15 6 2.1957 -0.9405 3.6506 16 1 2.2496 -2.0143 3.4712 17 6 1.2754 -0.6441 4.8537 18 6 1.9587 0.5799 5.4996 19 1 1.5300 1.5026 5.1084 20 6 1.8115 0.5304 6.9986 21 8 1.2203 -0.3867 7.5176 22 8 2.3362 1.5057 7.7570 23 6 3.4175 0.4701 5.1112 24 6 4.5373 1.0856 5.6454 25 6 5.7884 0.8292 5.1201 26 6 5.9248 -0.0452 4.0578 27 6 4.8094 -0.6599 3.5238 28 6 3.5549 -0.4054 4.0475 29 1 -0.3633 0.5914 0.8405 30 1 -0.3634 0.4322 -0.9323 31 1 -0.3634 -1.0235 0.0919 32 1 2.9546 -0.1027 -4.2498 33 1 1.1489 0.5384 2.5436 34 1 0.2686 -0.3942 4.5191 35 1 1.2573 -1.4871 5.5445 36 1 2.2165 1.4303 8.7137 37 1 4.4318 1.7678 6.4760 38 1 6.6597 1.3105 5.5392 39 1 6.9025 -0.2472 3.6461 40 1 4.9166 -1.3425 2.6937 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603119310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:28 Heat of formation + Delta-G solvation = -105.496205 kcal Electronic energy + Delta-G solvation = -24760.607664 eV Core-core repulsion = 21118.817810 eV Total energy + Delta-G solvation = -3641.789854 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.23660 -39.78343 -38.52386 -36.61995 -35.84706 -33.65688 -33.11297 -31.47229 -30.67244 -29.16371 -27.60605 -25.26003 -23.55432 -22.74432 -22.50401 -20.87393 -20.24316 -19.43926 -18.35663 -17.18232 -17.10964 -16.87521 -15.98992 -15.65073 -15.43309 -15.18394 -14.84085 -14.22757 -14.12620 -13.61730 -13.36886 -13.28436 -13.03588 -12.74504 -12.45272 -12.25064 -12.05897 -11.95355 -11.84313 -11.47716 -11.35495 -11.30654 -11.13071 -10.99662 -10.79245 -10.75154 -10.25760 -9.82672 -9.17565 -8.96851 -8.80369 -8.64236 -8.56518 -8.48106 -6.07169 -4.06376 1.19564 1.38185 1.92283 2.73620 3.23707 3.30285 3.33299 3.56501 3.61276 3.95308 4.09904 4.23167 4.37825 4.76486 4.84607 4.90493 5.04737 5.11094 5.15136 5.23678 5.44420 5.56520 5.64507 5.69628 5.78502 5.85865 6.07556 6.10597 6.12756 6.19695 6.37854 6.39715 6.51406 6.53346 6.62241 6.82267 6.93203 6.97603 7.17124 7.54879 7.58409 8.12231 8.53500 9.08450 9.13245 9.52567 11.06113 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.018444 B = 0.004225 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.726332 B = 6624.977772 C = 7180.222682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.004 4.004 3 H 0.054 0.946 4 C -0.494 4.494 5 H 0.086 0.914 6 C 0.072 3.928 7 N -0.895 5.895 8 Si 0.870 3.130 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.265 1.265 12 C 0.522 3.478 13 O -0.525 6.525 14 N -0.738 5.738 15 C 0.181 3.819 16 H 0.102 0.898 17 C -0.113 4.113 18 C -0.040 4.040 19 H 0.124 0.876 20 C 0.492 3.508 21 O -0.511 6.511 22 O -0.513 6.513 23 C -0.100 4.100 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.114 4.114 27 C -0.084 4.084 28 C -0.090 4.090 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.264 0.736 33 H 0.394 0.606 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.056 6.780 21.753 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.071 0.929 4 C -0.532 4.532 5 H 0.104 0.896 6 C -0.130 4.130 7 N -0.533 5.533 8 Si 0.697 3.303 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.189 1.189 12 C 0.310 3.690 13 O -0.399 6.399 14 N -0.392 5.392 15 C 0.075 3.925 16 H 0.119 0.881 17 C -0.151 4.151 18 C -0.059 4.059 19 H 0.141 0.859 20 C 0.334 3.666 21 O -0.399 6.399 22 O -0.325 6.325 23 C -0.100 4.100 24 C -0.120 4.120 25 C -0.139 4.139 26 C -0.132 4.132 27 C -0.103 4.103 28 C -0.092 4.092 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.228 0.772 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.267 0.733 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.395 5.825 21.136 21.928 hybrid contribution -0.171 1.536 0.595 1.657 sum 0.223 7.361 21.732 22.946 Atomic orbital electron populations 1.21946 0.96780 1.00532 0.99853 1.19357 0.94066 0.96955 0.92252 0.92854 1.20734 1.42896 0.96164 0.93411 0.89606 1.25018 0.94673 0.97921 0.95369 1.69886 1.45872 1.35656 1.01842 0.86976 0.78994 0.86834 0.77455 1.20154 1.21272 1.18947 1.21805 0.78847 0.84454 0.83848 1.90571 1.36739 1.26202 1.86364 1.46430 1.55126 1.32652 1.05005 1.20164 0.88335 0.98792 0.85169 0.88052 1.22667 0.98992 0.97019 0.96448 1.20607 0.95022 1.02950 0.87287 0.85852 1.23262 0.74065 0.78617 0.90674 1.90721 1.39718 1.34682 1.74780 1.84555 1.73487 1.49634 1.24794 1.20037 0.92522 0.99225 0.98263 1.20646 0.91364 0.99720 1.00298 1.21043 0.96930 0.98804 0.97076 1.21177 0.98728 0.96890 0.96413 1.20851 0.90984 0.99225 0.99193 1.20890 0.95421 0.97270 0.95586 0.95510 0.92452 0.93183 0.92557 0.77172 0.88655 0.87843 0.73267 0.85643 0.85843 0.85667 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.56 9.03 37.16 0.34 -2.22 16 2 C 0.00 -0.10 2.30 -92.92 -0.21 -0.32 16 3 H 0.05 1.18 5.28 -51.93 -0.27 0.91 16 4 C -0.49 -13.94 8.36 -34.44 -0.29 -14.23 16 5 H 0.09 2.76 7.61 -52.48 -0.40 2.36 16 6 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 7 N -0.89 -27.35 13.96 55.43 0.77 -26.58 16 8 Si 0.87 20.76 26.99 -169.99 -4.59 16.17 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -5.80 6.81 56.52 0.39 -5.42 16 12 C 0.52 11.00 7.14 -10.99 -0.08 10.92 16 13 O -0.53 -13.03 15.43 5.55 0.09 -12.94 16 14 N -0.74 -11.53 5.00 -53.92 -0.27 -11.80 16 15 C 0.18 2.54 3.18 -68.05 -0.22 2.32 16 16 H 0.10 1.60 7.60 -51.93 -0.39 1.20 16 17 C -0.11 -1.22 5.93 -25.32 -0.15 -1.37 16 18 C -0.04 -0.40 3.37 -91.89 -0.31 -0.71 16 19 H 0.12 1.03 8.14 -51.93 -0.42 0.60 16 20 C 0.49 4.97 7.55 36.01 0.27 5.24 16 21 O -0.51 -6.52 16.25 -18.76 -0.30 -6.82 16 22 O -0.51 -3.78 12.26 -39.26 -0.48 -4.26 16 23 C -0.10 -1.21 5.60 -104.12 -0.58 -1.79 16 24 C -0.10 -1.15 9.63 -39.54 -0.38 -1.53 16 25 C -0.12 -1.34 10.05 -39.62 -0.40 -1.74 16 26 C -0.11 -1.45 10.05 -39.62 -0.40 -1.84 16 27 C -0.08 -1.27 10.03 -39.61 -0.40 -1.67 16 28 C -0.09 -1.29 5.77 -104.19 -0.60 -1.90 16 29 H 0.03 0.40 7.71 -51.93 -0.40 0.00 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 33 H 0.39 5.05 8.12 -40.82 -0.33 4.72 16 34 H 0.09 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.10 1.17 7.02 -51.93 -0.36 0.80 16 36 H 0.41 1.30 9.10 45.56 0.41 1.71 16 37 H 0.13 1.17 7.13 -52.49 -0.37 0.80 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 39 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 40 H 0.13 2.24 8.05 -52.49 -0.42 1.82 16 LS Contribution 338.92 15.07 5.11 5.11 Total: -1.00 -35.19 338.92 -7.41 -42.61 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -4.23 Total: 7.39 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -3.51 Total: -8.88 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.50 Total: -38.37 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.70 Total: -24.02 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.59 Total: 16.17 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.19 -7.41 -42.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603119310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.889 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds