Wall clock time and date at job start Tue Mar 31 2020 08:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 N 1.46503 * 109.47333 * 179.97438 * 3 2 1 5 5 C 1.36682 * 119.99933 * 96.76229 * 4 3 2 6 6 H 1.07993 * 120.00500 * 160.56675 * 5 4 3 7 7 C 1.39183 * 119.99906 * 340.56312 * 5 4 3 8 8 N 1.31275 * 119.99806 * 358.08491 * 7 5 4 9 9 Si 1.86796 * 119.99912 * 178.08077 * 7 5 4 10 10 H 1.48496 * 109.47291 * 90.00125 * 9 7 5 11 11 H 1.48502 * 109.46949 * 210.00540 * 9 7 5 12 12 H 1.48502 * 109.47118 * 330.00185 * 9 7 5 13 13 C 1.34775 * 119.99969 * 276.76622 * 4 3 2 14 14 O 1.21594 * 120.00010 * 184.49029 * 13 4 3 15 15 C 1.47787 * 120.00073 * 4.48293 * 13 4 3 16 16 C 1.39623 * 121.11977 * 296.85838 * 15 13 4 17 17 C 1.38465 * 119.19099 * 180.25558 * 16 15 13 18 18 C 1.50697 * 119.15735 * 179.71308 * 17 16 15 19 19 N 1.31630 * 121.67625 * 359.44206 * 17 16 15 20 20 C 1.32439 * 122.05339 * 0.27146 * 19 17 16 21 21 O 1.34833 * 133.09397 * 180.02562 * 20 19 17 22 22 N 1.41332 * 109.41625 * 179.97438 * 21 20 19 23 23 C 1.29843 * 109.71738 * 359.97438 * 22 21 20 24 24 C 1.50705 * 126.33397 * 180.02562 * 23 22 21 25 25 C 1.40527 * 120.04284 * 0.02562 * 20 19 17 26 26 H 1.09003 * 109.47067 * 300.00430 * 1 2 3 27 27 H 1.09000 * 109.46918 * 60.00209 * 1 2 3 28 28 H 1.08996 * 109.47666 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47253 * 239.99303 * 2 1 3 30 30 H 1.09005 * 109.47089 * 120.00213 * 2 1 3 31 31 H 1.08997 * 109.47016 * 60.00057 * 3 2 1 32 32 H 1.09000 * 109.46824 * 299.99849 * 3 2 1 33 33 H 0.97007 * 119.99974 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.40206 * 359.97280 * 16 15 13 35 35 H 1.08994 * 109.47538 * 269.73124 * 18 17 16 36 36 H 1.09000 * 109.47813 * 29.73248 * 18 17 16 37 37 H 1.09001 * 109.47019 * 149.73455 * 18 17 16 38 38 H 1.08999 * 109.46801 * 264.29403 * 24 23 22 39 39 H 1.09000 * 109.46493 * 24.29306 * 24 23 22 40 40 H 1.09003 * 109.47043 * 144.29332 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1890 1.5816 -1.1746 6 1 5.2228 1.8937 -1.1641 7 6 3.5531 1.3210 -2.3849 8 7 2.3079 0.9054 -2.3959 9 14 4.4713 1.5628 -3.9935 10 1 5.1573 0.2997 -4.3666 11 1 3.5095 1.9379 -5.0610 12 1 5.4772 2.6432 -3.8317 13 6 4.1785 1.3050 1.1600 14 8 5.3916 1.3867 1.1718 15 6 3.4424 1.0553 2.4169 16 6 2.5440 1.9951 2.9259 17 6 1.8797 1.7222 4.1098 18 6 0.9151 2.7399 4.6619 19 7 2.0655 0.5944 4.7625 20 6 2.8992 -0.3392 4.3295 21 8 3.2546 -1.5495 4.8057 22 7 4.1983 -2.1388 3.9340 23 6 4.4364 -1.3379 2.9402 24 6 5.3811 -1.5934 1.7941 25 6 3.6193 -0.1420 3.1390 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.8645 0.7241 -3.2395 34 1 2.3726 2.9256 2.4049 35 1 1.4459 3.4196 5.3283 36 1 0.4748 3.3061 3.8410 37 1 0.1266 2.2302 5.2156 38 1 6.3451 -1.1320 2.0082 39 1 5.5130 -2.6676 1.6647 40 1 4.9682 -1.1653 0.8806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048953511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:00 Heat of formation + Delta-G solvation = 53.030488 kcal Electronic energy + Delta-G solvation = -25916.713119 eV Core-core repulsion = 22314.090249 eV Total energy + Delta-G solvation = -3602.622870 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76500 -39.30506 -38.22392 -35.60715 -34.44971 -32.71771 -32.01644 -31.85141 -31.31428 -28.49556 -27.45043 -26.15296 -25.18727 -23.55548 -22.59970 -20.92865 -20.66074 -19.11335 -17.86608 -17.27805 -16.98123 -16.51540 -16.12690 -15.20841 -14.53151 -14.22539 -14.06645 -13.95578 -13.77836 -13.51171 -13.22248 -13.13102 -13.02013 -12.62346 -12.53579 -12.33991 -12.17205 -11.90781 -11.88350 -11.46059 -11.20234 -11.14187 -10.94642 -10.71811 -10.56356 -10.49090 -10.34480 -9.93956 -9.66328 -9.16065 -9.08880 -8.69537 -8.59610 -7.92104 -6.50984 -4.12227 0.57385 1.21117 2.17886 2.34428 2.99258 3.11617 3.15502 3.43532 3.70161 3.91457 3.95364 4.35495 4.42659 4.66874 4.77628 4.90959 5.07473 5.24810 5.36799 5.49619 5.54063 5.70134 5.77962 5.82800 5.86736 5.89415 5.93788 6.00224 6.12528 6.21751 6.29402 6.35767 6.55554 6.57843 6.71208 6.79849 7.15081 7.31058 7.32367 7.52505 7.82686 7.84196 8.24162 8.87526 9.10034 9.64260 10.40009 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.005911 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.067234 B = 4735.485731 C = 5365.118079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.114 3.886 4 N -0.415 5.415 5 C -0.299 4.299 6 H 0.106 0.894 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.933 3.067 10 H -0.275 1.275 11 H -0.281 1.281 12 H -0.268 1.268 13 C 0.462 3.538 14 O -0.575 6.575 15 C 0.056 3.944 16 C -0.193 4.193 17 C 0.197 3.803 18 C -0.103 4.103 19 N -0.490 5.490 20 C 0.294 3.706 21 O -0.092 6.092 22 N -0.295 5.295 23 C 0.166 3.834 24 C -0.086 4.086 25 C -0.228 4.228 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.097 0.903 30 H 0.022 0.978 31 H 0.035 0.965 32 H 0.120 0.880 33 H 0.271 0.729 34 H 0.150 0.850 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.221 1.639 4.846 6.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C -0.009 4.009 4 N -0.131 5.131 5 C -0.427 4.427 6 H 0.124 0.876 7 C -0.173 4.173 8 N -0.502 5.502 9 Si 0.760 3.240 10 H -0.201 1.201 11 H -0.207 1.207 12 H -0.193 1.193 13 C 0.250 3.750 14 O -0.461 6.461 15 C 0.043 3.957 16 C -0.215 4.215 17 C 0.055 3.945 18 C -0.161 4.161 19 N -0.213 5.213 20 C 0.111 3.889 21 O -0.094 6.094 22 N -0.044 5.044 23 C -0.014 4.014 24 C -0.143 4.143 25 C -0.235 4.235 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.041 0.959 31 H 0.054 0.946 32 H 0.137 0.863 33 H 0.082 0.918 34 H 0.167 0.833 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.992 0.246 6.078 7.276 hybrid contribution 0.446 0.762 -1.770 1.978 sum -3.546 1.008 4.308 5.670 Atomic orbital electron populations 1.21570 0.97042 1.00109 1.00659 1.21864 0.94389 0.98037 1.01458 1.21913 0.79840 0.97443 1.01688 1.43725 1.05957 1.58171 1.05213 1.19830 0.98124 1.42889 0.81821 0.87590 1.25444 0.96154 0.95745 0.99953 1.69966 1.10607 1.42343 1.27291 0.85798 0.79020 0.79073 0.80148 1.20120 1.20689 1.19276 1.17660 0.87231 0.86875 0.83242 1.90667 1.12620 1.57124 1.85701 1.20325 0.90753 0.90265 0.94388 1.22036 0.99564 1.01598 0.98264 1.21192 0.93302 0.90175 0.89800 1.20805 0.97356 0.95901 1.02009 1.66290 1.19031 1.01096 1.34870 1.20257 0.91496 0.87853 0.89277 1.89168 1.52593 1.24605 1.43054 1.80018 1.05767 1.15605 1.02999 1.24510 0.92923 0.89484 0.94473 1.20562 0.97287 1.03100 0.93374 1.21172 1.04776 0.97644 0.99895 0.94494 0.92388 0.94160 0.88428 0.95909 0.94649 0.86277 0.91801 0.83257 0.89670 0.89745 0.89923 0.88115 0.90064 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.91 37.16 0.37 -1.91 16 2 C -0.12 -2.37 5.57 -26.73 -0.15 -2.51 16 3 C 0.11 2.33 4.32 -4.04 -0.02 2.31 16 4 N -0.42 -9.52 2.63 -115.92 -0.30 -9.83 16 5 C -0.30 -7.31 9.40 -15.04 -0.14 -7.46 16 6 H 0.11 2.73 7.29 -52.49 -0.38 2.35 16 7 C 0.03 0.71 5.30 -17.44 -0.09 0.62 16 8 N -0.86 -19.46 7.85 55.51 0.44 -19.02 16 9 Si 0.93 18.54 29.55 -169.99 -5.02 13.52 16 10 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 13 C 0.46 10.49 5.67 -12.36 -0.07 10.42 16 14 O -0.58 -14.56 15.92 5.28 0.08 -14.48 16 15 C 0.06 1.12 4.08 -104.46 -0.43 0.69 16 16 C -0.19 -3.22 7.57 -38.98 -0.30 -3.51 16 17 C 0.20 2.99 6.77 -82.60 -0.56 2.43 16 18 C -0.10 -1.05 10.14 36.00 0.37 -0.69 16 19 N -0.49 -8.71 10.25 -9.26 -0.09 -8.81 16 20 C 0.29 5.74 8.64 -16.43 -0.14 5.60 16 21 O -0.09 -1.82 12.06 7.66 0.09 -1.72 16 22 N -0.29 -5.64 12.82 34.84 0.45 -5.19 16 23 C 0.17 3.16 7.46 -80.24 -0.60 2.56 16 24 C -0.09 -1.45 9.39 36.01 0.34 -1.11 16 25 C -0.23 -4.55 6.07 -104.82 -0.64 -5.19 16 26 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.10 2.18 6.27 -51.93 -0.33 1.85 16 30 H 0.02 0.46 7.18 -51.93 -0.37 0.09 16 31 H 0.04 0.65 4.97 -51.93 -0.26 0.39 16 32 H 0.12 2.61 5.84 -51.93 -0.30 2.30 16 33 H 0.27 5.86 8.31 -40.82 -0.34 5.52 16 34 H 0.15 2.18 7.36 -52.48 -0.39 1.80 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.69 8.07 -51.93 -0.42 0.28 16 37 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 1.93 6.93 -51.93 -0.36 1.57 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -27.53 331.92 -6.32 -33.85 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -4.90 Total: 4.42 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: -2.06 Total: 2.26 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 0.48 Total: -42.85 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: 0.18 Total: -16.20 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.02 Total: 13.52 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.53 -6.32 -33.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.882 kcal (2) G-P(sol) polarization free energy of solvation -27.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds