Wall clock time and date at job start Tue Mar 31 2020 08:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47580 * 2 1 4 4 N 1.46503 * 109.47333 * 179.97438 * 3 2 1 5 5 C 1.36682 * 119.99933 * 96.76229 * 4 3 2 6 6 H 1.07993 * 120.00500 * 160.56675 * 5 4 3 7 7 C 1.39183 * 119.99906 * 340.56312 * 5 4 3 8 8 N 1.31275 * 119.99806 * 358.08491 * 7 5 4 9 9 Si 1.86796 * 119.99912 * 178.08077 * 7 5 4 10 10 H 1.48496 * 109.47291 * 90.00125 * 9 7 5 11 11 H 1.48502 * 109.46949 * 210.00540 * 9 7 5 12 12 H 1.48502 * 109.47118 * 330.00185 * 9 7 5 13 13 C 1.34775 * 119.99969 * 276.76622 * 4 3 2 14 14 O 1.21594 * 120.00010 * 184.49029 * 13 4 3 15 15 C 1.47787 * 120.00073 * 4.48293 * 13 4 3 16 16 C 1.39623 * 121.11977 * 296.85838 * 15 13 4 17 17 C 1.38465 * 119.19099 * 180.25558 * 16 15 13 18 18 C 1.50697 * 119.15735 * 179.71308 * 17 16 15 19 19 N 1.31630 * 121.67625 * 359.44206 * 17 16 15 20 20 C 1.32439 * 122.05339 * 0.27146 * 19 17 16 21 21 O 1.34833 * 133.09397 * 180.02562 * 20 19 17 22 22 N 1.41332 * 109.41625 * 179.97438 * 21 20 19 23 23 C 1.29843 * 109.71738 * 359.97438 * 22 21 20 24 24 C 1.50705 * 126.33397 * 180.02562 * 23 22 21 25 25 C 1.40527 * 120.04284 * 0.02562 * 20 19 17 26 26 H 1.09003 * 109.47067 * 300.00430 * 1 2 3 27 27 H 1.09000 * 109.46918 * 60.00209 * 1 2 3 28 28 H 1.08996 * 109.47666 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47253 * 239.99303 * 2 1 3 30 30 H 1.09005 * 109.47089 * 120.00213 * 2 1 3 31 31 H 1.08997 * 109.47016 * 60.00057 * 3 2 1 32 32 H 1.09000 * 109.46824 * 299.99849 * 3 2 1 33 33 H 0.97007 * 119.99974 * 179.97438 * 8 7 5 34 34 H 1.08004 * 120.40206 * 359.97280 * 16 15 13 35 35 H 1.08994 * 109.47538 * 269.73124 * 18 17 16 36 36 H 1.09000 * 109.47813 * 29.73248 * 18 17 16 37 37 H 1.09001 * 109.47019 * 149.73455 * 18 17 16 38 38 H 1.08999 * 109.46801 * 264.29403 * 24 23 22 39 39 H 1.09000 * 109.46493 * 24.29306 * 24 23 22 40 40 H 1.09003 * 109.47043 * 144.29332 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1890 1.5816 -1.1746 6 1 5.2228 1.8937 -1.1641 7 6 3.5531 1.3210 -2.3849 8 7 2.3079 0.9054 -2.3959 9 14 4.4713 1.5628 -3.9935 10 1 5.1573 0.2997 -4.3666 11 1 3.5095 1.9379 -5.0610 12 1 5.4772 2.6432 -3.8317 13 6 4.1785 1.3050 1.1600 14 8 5.3916 1.3867 1.1718 15 6 3.4424 1.0553 2.4169 16 6 2.5440 1.9951 2.9259 17 6 1.8797 1.7222 4.1098 18 6 0.9151 2.7399 4.6619 19 7 2.0655 0.5944 4.7625 20 6 2.8992 -0.3392 4.3295 21 8 3.2546 -1.5495 4.8057 22 7 4.1983 -2.1388 3.9340 23 6 4.4364 -1.3379 2.9402 24 6 5.3811 -1.5934 1.7941 25 6 3.6193 -0.1420 3.1390 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 1.8645 0.7241 -3.2395 34 1 2.3726 2.9256 2.4049 35 1 1.4459 3.4196 5.3283 36 1 0.4748 3.3061 3.8410 37 1 0.1266 2.2302 5.2156 38 1 6.3451 -1.1320 2.0082 39 1 5.5130 -2.6676 1.6647 40 1 4.9682 -1.1653 0.8806 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048953511.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:00 Heat of formation + Delta-G solvation = 36.241432 kcal Electronic energy + Delta-G solvation = -25917.441147 eV Core-core repulsion = 22314.090249 eV Total energy + Delta-G solvation = -3603.350898 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.22279 -40.90739 -39.72454 -37.35256 -35.94534 -34.35052 -33.47330 -33.20564 -32.90948 -29.91183 -28.68376 -27.77717 -26.77715 -25.08792 -23.98494 -22.47142 -22.16915 -20.70829 -19.28293 -19.02719 -18.42901 -18.16534 -17.60826 -16.87062 -16.15991 -15.85368 -15.56400 -15.29979 -15.09709 -15.04261 -14.72340 -14.52749 -14.47945 -14.06191 -13.82083 -13.78101 -13.51867 -13.10822 -13.05320 -13.02565 -12.80621 -12.61151 -12.46650 -12.28649 -12.20397 -12.06462 -11.94638 -11.55851 -11.17148 -10.80696 -10.64348 -10.35542 -10.01922 -9.66368 -8.26865 -5.97140 -0.84786 -0.22342 0.71359 0.90707 1.37036 1.47218 1.56617 1.79541 2.18805 2.36201 2.50378 2.79790 2.94819 3.07970 3.29623 3.51008 3.60885 3.85632 4.06650 4.19951 4.31724 4.36892 4.43545 4.47943 4.49027 4.63193 4.76002 4.81614 4.83507 4.91177 4.93392 5.04674 5.07832 5.19937 5.34398 5.36731 5.41268 5.59857 5.83560 5.84433 6.04169 6.46623 6.48146 7.07925 7.33574 7.87493 8.61912 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.015815 B = 0.005911 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1770.067234 B = 4735.485731 C = 5365.118079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.110 4.110 3 C 0.119 3.881 4 N -0.422 5.422 5 C -0.336 4.336 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.864 5.864 9 Si 0.988 3.012 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.274 1.274 13 C 0.461 3.539 14 O -0.613 6.613 15 C 0.037 3.963 16 C -0.187 4.187 17 C 0.211 3.789 18 C -0.102 4.102 19 N -0.494 5.494 20 C 0.284 3.716 21 O -0.102 6.102 22 N -0.298 5.298 23 C 0.159 3.841 24 C -0.077 4.077 25 C -0.249 4.249 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.009 0.991 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.276 0.724 34 H 0.173 0.827 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.209 2.643 5.296 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.148 4.148 3 C -0.003 4.003 4 N -0.136 5.136 5 C -0.464 4.464 6 H 0.099 0.901 7 C -0.195 4.195 8 N -0.501 5.501 9 Si 0.813 3.187 10 H -0.204 1.204 11 H -0.194 1.194 12 H -0.199 1.199 13 C 0.250 3.750 14 O -0.501 6.501 15 C 0.024 3.976 16 C -0.207 4.207 17 C 0.069 3.931 18 C -0.159 4.159 19 N -0.217 5.217 20 C 0.101 3.899 21 O -0.104 6.104 22 N -0.048 5.048 23 C -0.020 4.020 24 C -0.135 4.135 25 C -0.257 4.257 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.124 0.876 33 H 0.087 0.913 34 H 0.190 0.810 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.112 0.888 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.022 1.244 6.530 8.970 hybrid contribution 1.008 0.498 -1.848 2.164 sum -5.014 1.742 4.681 7.078 Atomic orbital electron populations 1.21494 0.94350 1.01069 1.01616 1.21709 0.96614 0.97133 0.99356 1.21926 0.78475 0.97829 1.02074 1.43847 1.06916 1.57995 1.04891 1.19708 0.97708 1.45656 0.83286 0.90091 1.25987 0.96867 0.94979 1.01669 1.70041 1.10824 1.41227 1.28055 0.84992 0.78056 0.78460 0.77229 1.20418 1.19396 1.19857 1.18001 0.86977 0.85980 0.84069 1.90619 1.14377 1.58609 1.86502 1.20166 0.92281 0.91514 0.93665 1.22391 0.98157 1.01488 0.98708 1.22079 0.92584 0.89842 0.88577 1.21061 0.96500 0.94890 1.03436 1.66497 1.18606 1.01480 1.35153 1.20473 0.92036 0.88074 0.89273 1.89119 1.52843 1.25037 1.43413 1.79979 1.06013 1.15663 1.03114 1.24783 0.93041 0.89434 0.94768 1.20514 0.96663 1.04773 0.91540 1.21327 1.05668 0.98145 1.00511 0.92654 0.92208 0.93263 0.91259 0.97218 0.92276 0.87586 0.91346 0.80951 0.87366 0.86962 0.88849 0.87893 0.87208 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.91 71.98 0.71 -3.29 16 2 C -0.11 -4.31 5.57 30.59 0.17 -4.14 16 3 C 0.12 4.79 4.32 86.38 0.37 5.17 16 4 N -0.42 -19.73 2.63 -638.92 -1.68 -21.41 16 5 C -0.34 -16.97 9.40 84.16 0.79 -16.18 16 6 H 0.08 4.41 7.29 -2.91 -0.02 4.39 16 7 C 0.01 0.41 5.30 85.00 0.45 0.86 16 8 N -0.86 -38.79 7.85 21.70 0.17 -38.61 16 9 Si 0.99 38.14 29.55 68.60 2.03 40.17 16 10 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 11 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 12 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 13 C 0.46 21.45 5.67 86.77 0.49 21.95 16 14 O -0.61 -32.34 15.92 -4.01 -0.06 -32.41 16 15 C 0.04 1.46 4.08 -19.76 -0.08 1.38 16 16 C -0.19 -5.80 7.57 22.66 0.17 -5.63 16 17 C 0.21 5.77 6.77 42.64 0.29 6.05 16 18 C -0.10 -1.59 10.14 71.24 0.72 -0.86 16 19 N -0.49 -16.58 10.25 -296.45 -3.04 -19.62 16 20 C 0.28 10.92 8.64 85.16 0.74 11.65 16 21 O -0.10 -4.04 12.06 29.79 0.36 -3.68 16 22 N -0.30 -11.47 12.82 -43.68 -0.56 -12.03 16 23 C 0.16 6.18 7.46 44.92 0.33 6.51 16 24 C -0.08 -2.70 9.39 71.24 0.67 -2.03 16 25 C -0.25 -10.02 6.07 -19.99 -0.12 -10.15 16 26 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 3.12 6.27 -2.39 -0.01 3.11 16 30 H 0.01 0.38 7.18 -2.38 -0.02 0.36 16 31 H 0.06 2.05 4.97 -2.39 -0.01 2.04 16 32 H 0.11 4.57 5.84 -2.39 -0.01 4.56 16 33 H 0.28 11.69 8.31 -92.70 -0.77 10.92 16 34 H 0.17 4.49 7.36 -2.91 -0.02 4.47 16 35 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.07 3.01 6.93 -2.39 -0.02 3.00 16 Total: -1.00 -61.60 331.92 4.00 -57.59 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 1.08 Total: 18.71 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 5.71 Total: 11.29 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -5.11 Total: -91.67 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: 0.30 Total: -36.09 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -61.60 4.00 -57.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048953511.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.836 kcal (2) G-P(sol) polarization free energy of solvation -61.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds