Wall clock time and date at job start Tue Mar 31 2020 08:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 H 1.08997 * 109.47409 * 174.08548 * 3 2 1 5 5 C 1.50704 * 109.47173 * 54.08549 * 3 2 1 6 6 H 1.08006 * 119.99821 * 239.99625 * 5 3 2 7 7 C 1.37874 * 120.00000 * 60.00301 * 5 3 2 8 8 N 1.31518 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46841 * 89.99986 * 9 7 5 11 11 H 1.48498 * 109.46940 * 209.99541 * 9 7 5 12 12 H 1.48495 * 109.47162 * 329.99986 * 9 7 5 13 13 N 1.46901 * 109.47369 * 294.08347 * 3 2 1 14 14 C 1.46895 * 111.00014 * 275.78811 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.20460 * 14 13 3 16 16 C 1.34714 * 125.66796 * 89.71455 * 15 14 13 17 17 C 1.40948 * 107.03456 * 179.85286 * 16 15 14 18 18 C 1.35951 * 106.73532 * 0.40589 * 17 16 15 19 19 C 1.47797 * 125.92652 * 179.75285 * 18 17 16 20 20 C 1.39590 * 120.12515 * 359.70045 * 19 18 17 21 21 C 1.37920 * 119.87908 * 179.72263 * 20 19 18 22 22 C 1.38578 * 120.11823 * 0.55452 * 21 20 19 23 23 F 1.35105 * 119.87521 * 179.70053 * 22 21 20 24 24 C 1.38575 * 120.24662 * 359.71700 * 22 21 20 25 25 C 1.37922 * 120.12144 * 0.02562 * 24 22 21 26 26 O 1.34323 * 125.66124 * 270.02075 * 15 14 13 27 27 H 1.08999 * 109.47481 * 298.55883 * 1 2 3 28 28 H 1.08998 * 109.46732 * 178.55551 * 1 2 3 29 29 H 1.08998 * 109.46710 * 58.56446 * 1 2 3 30 30 H 1.09000 * 109.46840 * 119.99832 * 2 1 3 31 31 H 1.08996 * 109.47559 * 239.99869 * 2 1 3 32 32 H 0.97006 * 119.99622 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99371 * 39.74006 * 13 3 2 34 34 H 1.09005 * 109.47061 * 296.19731 * 14 13 3 35 35 H 1.08997 * 109.47274 * 56.20246 * 14 13 3 36 36 H 1.08001 * 126.48228 * 359.96448 * 16 15 14 37 37 H 1.07999 * 126.63145 * 180.14100 * 17 16 15 38 38 H 1.08000 * 120.05793 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.93766 * 180.27407 * 21 20 19 40 40 H 1.07996 * 119.93885 * 179.97438 * 24 22 21 41 41 H 1.07998 * 120.06445 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1059 5 6 1.4217 2.1939 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6308 1.7667 2.4449 8 7 2.3694 0.7032 2.6750 9 14 0.8649 2.6986 3.8712 10 1 -0.4774 2.1362 4.1661 11 1 1.7310 2.5672 5.0703 12 1 0.7323 4.1331 3.5111 13 7 1.6704 2.0926 -1.2644 14 6 2.6511 1.7937 -2.3164 15 6 2.1915 2.3982 -3.6181 16 6 2.4849 3.6382 -4.0553 17 6 1.8611 3.7922 -5.3097 18 6 1.2071 2.6284 -5.5672 19 6 0.4057 2.3325 -6.7732 20 6 0.2635 3.2956 -7.7736 21 6 -0.4808 3.0121 -8.8996 22 6 -1.0964 1.7778 -9.0336 23 9 -1.8293 1.5074 -10.1358 24 6 -0.9633 0.8199 -8.0410 25 6 -0.2169 1.0909 -6.9132 26 8 1.4164 1.7921 -4.5325 27 1 -0.3634 0.4913 0.9026 28 1 -0.3633 -1.0273 -0.0259 29 1 -0.3633 0.5360 -0.8768 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.5162 0.4025 3.5855 33 1 0.7405 1.8248 -1.5503 34 1 3.6183 2.2148 -2.0417 35 1 2.7442 0.7137 -2.4301 36 1 3.0861 4.3744 -3.5424 37 1 1.8926 4.6671 -5.9420 38 1 0.7389 4.2596 -7.6679 39 1 -0.5877 3.7549 -9.6762 40 1 -1.4455 -0.1402 -8.1504 41 1 -0.1135 0.3436 -6.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054182834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:17 Heat of formation + Delta-G solvation = -11.425103 kcal Electronic energy + Delta-G solvation = -23366.056409 eV Core-core repulsion = 19740.718574 eV Total energy + Delta-G solvation = -3625.337836 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.18171 -42.45724 -39.11007 -36.67847 -33.27585 -33.07260 -31.81628 -31.45539 -30.66773 -28.37797 -26.33897 -24.43546 -23.58120 -23.27010 -22.42686 -21.25798 -20.14516 -19.36381 -18.17234 -17.37376 -16.43976 -16.29640 -16.06878 -15.83597 -15.27055 -14.76811 -14.72629 -14.31039 -13.95490 -13.74238 -13.48008 -13.30614 -13.00596 -12.75309 -12.72773 -12.55314 -12.24989 -11.99588 -11.85702 -11.66644 -11.30825 -10.94075 -10.72936 -10.56803 -10.04155 -9.97391 -9.94427 -9.61193 -9.48921 -9.39819 -9.04008 -8.38590 -7.81634 -7.34192 -6.01358 -4.03067 0.42936 0.89864 1.98151 2.71255 2.85522 3.30835 3.37912 3.42442 3.43331 3.92640 4.36763 4.41114 4.46556 4.52297 4.87692 4.95594 5.05990 5.12514 5.30684 5.37823 5.49572 5.56956 5.73129 5.75765 5.78885 5.84879 5.94216 6.01753 6.21917 6.23535 6.31567 6.34108 6.50820 6.52270 6.63059 6.85855 7.15265 7.21102 7.29148 7.45985 7.63558 7.83479 8.19598 8.40753 8.52431 9.02189 9.60673 11.05780 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.002611 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.407327 B =10720.957767 C =11104.026309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.147 4.147 3 C 0.215 3.785 4 H 0.036 0.964 5 C -0.490 4.490 6 H 0.062 0.938 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.133 3.867 15 C 0.024 3.976 16 C -0.200 4.200 17 C -0.178 4.178 18 C 0.002 3.998 19 C -0.010 4.010 20 C -0.075 4.075 21 C -0.148 4.148 22 C 0.094 3.906 23 F -0.140 7.140 24 C -0.147 4.147 25 C -0.078 4.078 26 O -0.170 6.170 27 H 0.066 0.934 28 H 0.023 0.977 29 H 0.029 0.971 30 H 0.094 0.906 31 H 0.011 0.989 32 H 0.260 0.740 33 H 0.331 0.669 34 H 0.098 0.902 35 H 0.039 0.961 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.927 2.293 -20.942 21.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.528 4.528 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.310 5.310 14 C 0.004 3.996 15 C -0.027 4.027 16 C -0.219 4.219 17 C -0.197 4.197 18 C -0.048 4.048 19 C -0.011 4.011 20 C -0.093 4.093 21 C -0.167 4.167 22 C 0.075 3.925 23 F -0.119 7.119 24 C -0.166 4.166 25 C -0.096 4.096 26 O -0.067 6.067 27 H 0.085 0.915 28 H 0.042 0.958 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.116 0.884 35 H 0.057 0.943 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.703 2.485 -20.627 20.951 hybrid contribution -0.694 -0.412 0.439 0.918 sum -3.397 2.073 -20.188 20.576 Atomic orbital electron populations 1.21565 0.97584 0.98101 1.01286 1.22122 0.95171 1.00978 1.00348 1.19259 0.96335 0.88763 0.84845 0.94595 1.21023 1.30614 1.11613 0.89585 0.91933 1.24903 0.95506 0.95183 0.98708 1.69882 1.39133 1.24106 1.20427 0.86550 0.78974 0.80383 0.81841 1.20838 1.21398 1.19871 1.61042 1.03891 1.63210 1.02836 1.20528 0.97574 0.97577 0.83919 1.22934 0.94825 0.93217 0.91762 1.21497 1.06465 0.97303 0.96685 1.21757 1.01471 0.98131 0.98339 1.20125 1.04357 0.90550 0.89775 1.17813 0.97376 0.94707 0.91183 1.20899 0.97694 0.99008 0.91732 1.21010 0.99812 0.96174 0.99659 1.17816 0.95057 0.95064 0.84562 1.91504 1.74935 1.94260 1.51172 1.21088 1.01762 0.99933 0.93835 1.21189 0.94966 0.96282 0.97141 1.84003 1.55621 1.41403 1.25646 0.91454 0.95808 0.95217 0.88755 0.96996 0.93052 0.85048 0.88361 0.94284 0.82991 0.83436 0.84334 0.84202 0.84299 0.84267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.39 37.16 0.35 -2.35 16 2 C -0.15 -3.34 5.50 -26.73 -0.15 -3.48 16 3 C 0.22 5.12 2.33 -68.86 -0.16 4.96 16 4 H 0.04 0.93 7.86 -51.93 -0.41 0.53 16 5 C -0.49 -12.92 7.35 -34.44 -0.25 -13.17 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.54 5.22 -17.82 -0.09 1.45 16 8 N -0.90 -24.70 11.39 55.43 0.63 -24.07 16 9 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 N -0.68 -13.95 6.24 -109.22 -0.68 -14.63 16 14 C 0.13 2.31 6.01 -4.98 -0.03 2.28 16 15 C 0.02 0.38 6.79 -35.55 -0.24 0.14 16 16 C -0.20 -2.88 10.78 -39.80 -0.43 -3.31 16 17 C -0.18 -2.26 10.26 -39.38 -0.40 -2.67 16 18 C 0.00 0.02 7.03 -36.49 -0.26 -0.23 16 19 C -0.01 -0.12 5.87 -104.98 -0.62 -0.74 16 20 C -0.08 -0.69 9.56 -39.19 -0.37 -1.06 16 21 C -0.15 -1.26 10.01 -39.57 -0.40 -1.65 16 22 C 0.09 0.91 7.30 -39.33 -0.29 0.62 16 23 F -0.14 -1.42 17.26 2.25 0.04 -1.38 16 24 C -0.15 -1.39 10.01 -39.57 -0.40 -1.79 16 25 C -0.08 -0.83 9.72 -39.19 -0.38 -1.21 16 26 O -0.17 -2.68 10.41 4.63 0.05 -2.63 16 27 H 0.07 1.56 7.05 -51.93 -0.37 1.19 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.57 6.42 -51.93 -0.33 0.24 16 30 H 0.09 2.41 6.25 -51.93 -0.32 2.09 16 31 H 0.01 0.24 7.24 -51.93 -0.38 -0.13 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 33 H 0.33 6.75 6.55 -39.29 -0.26 6.49 16 34 H 0.10 1.63 8.13 -51.93 -0.42 1.21 16 35 H 0.04 0.68 7.23 -51.93 -0.38 0.30 16 36 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 37 H 0.15 1.41 7.26 -52.49 -0.38 1.03 16 38 H 0.14 0.97 6.99 -52.49 -0.37 0.60 16 39 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.14 1.44 7.91 -52.49 -0.42 1.03 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -28.06 346.61 -9.14 -37.20 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.26 Total: 6.52 kcal Atomic # 6 Polarization: -18.10 SS G_CDS: -4.12 Total: -22.22 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.05 Total: -38.70 kcal Atomic # 8 Polarization: -2.68 SS G_CDS: 0.05 Total: -2.63 kcal Atomic # 9 Polarization: -1.42 SS G_CDS: 0.04 Total: -1.38 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.06 -9.14 -37.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.777 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds