Wall clock time and date at job start Tue Mar 31 2020 08:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47070 * 2 1 4 4 H 1.08997 * 109.47409 * 174.08548 * 3 2 1 5 5 C 1.50704 * 109.47173 * 54.08549 * 3 2 1 6 6 H 1.08006 * 119.99821 * 239.99625 * 5 3 2 7 7 C 1.37874 * 120.00000 * 60.00301 * 5 3 2 8 8 N 1.31518 * 119.99950 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99808 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.46841 * 89.99986 * 9 7 5 11 11 H 1.48498 * 109.46940 * 209.99541 * 9 7 5 12 12 H 1.48495 * 109.47162 * 329.99986 * 9 7 5 13 13 N 1.46901 * 109.47369 * 294.08347 * 3 2 1 14 14 C 1.46895 * 111.00014 * 275.78811 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.20460 * 14 13 3 16 16 C 1.34714 * 125.66796 * 89.71455 * 15 14 13 17 17 C 1.40948 * 107.03456 * 179.85286 * 16 15 14 18 18 C 1.35951 * 106.73532 * 0.40589 * 17 16 15 19 19 C 1.47797 * 125.92652 * 179.75285 * 18 17 16 20 20 C 1.39590 * 120.12515 * 359.70045 * 19 18 17 21 21 C 1.37920 * 119.87908 * 179.72263 * 20 19 18 22 22 C 1.38578 * 120.11823 * 0.55452 * 21 20 19 23 23 F 1.35105 * 119.87521 * 179.70053 * 22 21 20 24 24 C 1.38575 * 120.24662 * 359.71700 * 22 21 20 25 25 C 1.37922 * 120.12144 * 0.02562 * 24 22 21 26 26 O 1.34323 * 125.66124 * 270.02075 * 15 14 13 27 27 H 1.08999 * 109.47481 * 298.55883 * 1 2 3 28 28 H 1.08998 * 109.46732 * 178.55551 * 1 2 3 29 29 H 1.08998 * 109.46710 * 58.56446 * 1 2 3 30 30 H 1.09000 * 109.46840 * 119.99832 * 2 1 3 31 31 H 1.08996 * 109.47559 * 239.99869 * 2 1 3 32 32 H 0.97006 * 119.99622 * 180.02562 * 8 7 5 33 33 H 1.00901 * 110.99371 * 39.74006 * 13 3 2 34 34 H 1.09005 * 109.47061 * 296.19731 * 14 13 3 35 35 H 1.08997 * 109.47274 * 56.20246 * 14 13 3 36 36 H 1.08001 * 126.48228 * 359.96448 * 16 15 14 37 37 H 1.07999 * 126.63145 * 180.14100 * 17 16 15 38 38 H 1.08000 * 120.05793 * 359.97438 * 20 19 18 39 39 H 1.08001 * 119.93766 * 180.27407 * 21 20 19 40 40 H 1.07996 * 119.93885 * 179.97438 * 24 22 21 41 41 H 1.07998 * 120.06445 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1059 5 6 1.4217 2.1939 1.1507 6 1 0.8148 3.0671 0.9616 7 6 1.6308 1.7667 2.4449 8 7 2.3694 0.7032 2.6750 9 14 0.8649 2.6986 3.8712 10 1 -0.4774 2.1362 4.1661 11 1 1.7310 2.5672 5.0703 12 1 0.7323 4.1331 3.5111 13 7 1.6704 2.0926 -1.2644 14 6 2.6511 1.7937 -2.3164 15 6 2.1915 2.3982 -3.6181 16 6 2.4849 3.6382 -4.0553 17 6 1.8611 3.7922 -5.3097 18 6 1.2071 2.6284 -5.5672 19 6 0.4057 2.3325 -6.7732 20 6 0.2635 3.2956 -7.7736 21 6 -0.4808 3.0121 -8.8996 22 6 -1.0964 1.7778 -9.0336 23 9 -1.8293 1.5074 -10.1358 24 6 -0.9633 0.8199 -8.0410 25 6 -0.2169 1.0909 -6.9132 26 8 1.4164 1.7921 -4.5325 27 1 -0.3634 0.4913 0.9026 28 1 -0.3633 -1.0273 -0.0259 29 1 -0.3633 0.5360 -0.8768 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 2.5162 0.4025 3.5855 33 1 0.7405 1.8248 -1.5503 34 1 3.6183 2.2148 -2.0417 35 1 2.7442 0.7137 -2.4301 36 1 3.0861 4.3744 -3.5424 37 1 1.8926 4.6671 -5.9420 38 1 0.7389 4.2596 -7.6679 39 1 -0.5877 3.7549 -9.6762 40 1 -1.4455 -0.1402 -8.1504 41 1 -0.1135 0.3436 -6.1405 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054182834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:10:17 Heat of formation + Delta-G solvation = -25.340053 kcal Electronic energy + Delta-G solvation = -23366.659807 eV Core-core repulsion = 19740.718574 eV Total energy + Delta-G solvation = -3625.941233 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.94309 -43.54611 -39.86596 -38.41771 -34.89509 -34.15130 -33.23484 -32.21731 -32.08759 -29.71974 -28.02294 -25.85397 -25.04302 -24.35547 -23.38304 -22.27964 -21.28948 -21.14311 -19.00105 -18.44422 -17.98179 -17.25490 -17.17312 -16.81792 -16.62299 -16.43327 -16.09859 -15.38056 -15.08521 -14.71965 -14.64957 -14.55332 -14.35663 -14.10366 -13.82683 -13.74505 -13.55189 -13.39181 -13.24999 -12.91968 -12.78137 -12.52783 -12.46665 -12.01701 -11.89287 -11.77177 -11.45070 -11.00703 -10.95790 -10.43350 -10.37009 -10.19145 -9.07464 -8.75976 -8.05437 -6.13631 -0.40991 0.19501 0.94761 1.43887 1.45931 1.55505 1.68664 1.80080 2.46847 2.64610 3.19479 3.23855 3.43718 3.66418 3.79565 3.85503 3.90812 4.10483 4.19942 4.25358 4.44104 4.51900 4.55633 4.61628 4.68590 4.74462 4.86900 4.87928 4.98166 5.01752 5.06950 5.08589 5.23626 5.30222 5.35287 5.39588 5.60157 5.66100 5.73272 5.78472 5.80619 6.18148 6.28942 6.60585 6.71553 6.96491 7.53744 8.99964 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.025838 B = 0.002611 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.407327 B =10720.957767 C =11104.026309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.140 4.140 3 C 0.221 3.779 4 H 0.008 0.992 5 C -0.500 4.500 6 H 0.052 0.948 7 C 0.016 3.984 8 N -0.919 5.919 9 Si 0.951 3.049 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.680 5.680 14 C 0.140 3.860 15 C -0.008 4.008 16 C -0.195 4.195 17 C -0.180 4.180 18 C 0.002 3.998 19 C -0.034 4.034 20 C -0.067 4.067 21 C -0.142 4.142 22 C 0.087 3.913 23 F -0.143 7.143 24 C -0.150 4.150 25 C -0.088 4.088 26 O -0.187 6.187 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.026 0.974 32 H 0.259 0.741 33 H 0.332 0.668 34 H 0.101 0.899 35 H 0.036 0.964 36 H 0.162 0.838 37 H 0.182 0.818 38 H 0.164 0.836 39 H 0.168 0.832 40 H 0.154 0.846 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.792 3.561 -22.855 23.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.180 4.180 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.539 4.539 6 H 0.070 0.930 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.312 5.312 14 C 0.011 3.989 15 C -0.058 4.058 16 C -0.215 4.215 17 C -0.198 4.198 18 C -0.047 4.047 19 C -0.034 4.034 20 C -0.084 4.084 21 C -0.161 4.161 22 C 0.068 3.932 23 F -0.122 7.122 24 C -0.169 4.169 25 C -0.106 4.106 26 O -0.085 6.085 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.150 0.850 34 H 0.119 0.881 35 H 0.054 0.946 36 H 0.180 0.820 37 H 0.200 0.800 38 H 0.182 0.818 39 H 0.185 0.815 40 H 0.171 0.829 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.569 3.757 -22.553 23.140 hybrid contribution -0.451 -0.809 0.868 1.269 sum -4.020 2.948 -21.685 22.250 Atomic orbital electron populations 1.21451 0.96164 0.99318 1.00721 1.21973 0.96371 1.00049 0.99567 1.19004 0.94373 0.89407 0.85914 0.97386 1.21231 1.30457 1.11445 0.90779 0.92994 1.25556 0.95939 0.95905 1.00862 1.70003 1.40071 1.25159 1.20742 0.85665 0.78277 0.79247 0.79097 1.20343 1.21203 1.19657 1.60897 1.04603 1.62945 1.02770 1.20386 0.96877 0.97617 0.84050 1.22604 0.97173 0.94135 0.91927 1.21768 1.05756 0.96637 0.97329 1.22105 1.00765 0.99000 0.97971 1.20685 1.03945 0.90492 0.89622 1.17983 0.98327 0.95801 0.91300 1.21174 0.97054 0.99378 0.90841 1.21315 0.98613 0.96166 0.99962 1.18039 0.95072 0.95660 0.84398 1.91500 1.75048 1.94344 1.51301 1.21225 1.01493 1.00742 0.93396 1.21229 0.95506 0.96305 0.97570 1.83964 1.55919 1.42303 1.26302 0.93794 0.93806 0.93767 0.91642 0.95527 0.93139 0.84973 0.88105 0.94562 0.82048 0.80025 0.81821 0.81481 0.82874 0.84818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.39 71.98 0.68 -4.32 16 2 C -0.14 -6.46 5.50 30.59 0.17 -6.29 16 3 C 0.22 10.77 2.33 44.17 0.10 10.87 16 4 H 0.01 0.44 7.86 -2.39 -0.02 0.42 16 5 C -0.50 -26.82 7.35 25.60 0.19 -26.63 16 6 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 7 C 0.02 0.85 5.22 84.65 0.44 1.29 16 8 N -0.92 -51.62 11.39 21.45 0.24 -51.38 16 9 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 13 N -0.68 -28.34 6.24 -499.47 -3.12 -31.46 16 14 C 0.14 4.91 6.01 85.56 0.51 5.43 16 15 C -0.01 -0.26 6.79 24.88 0.17 -0.09 16 16 C -0.20 -5.40 10.78 22.13 0.24 -5.16 16 17 C -0.18 -4.16 10.26 22.40 0.23 -3.93 16 18 C 0.00 0.05 7.03 24.27 0.17 0.22 16 19 C -0.03 -0.71 5.87 -20.09 -0.12 -0.83 16 20 C -0.07 -1.01 9.56 22.52 0.22 -0.79 16 21 C -0.14 -1.96 10.01 22.28 0.22 -1.74 16 22 C 0.09 1.49 7.30 22.43 0.16 1.66 16 23 F -0.14 -2.61 17.26 44.97 0.78 -1.83 16 24 C -0.15 -2.62 10.01 22.28 0.22 -2.39 16 25 C -0.09 -1.80 9.72 22.52 0.22 -1.58 16 26 O -0.19 -5.86 10.41 -6.35 -0.07 -5.92 16 27 H 0.04 2.03 7.05 -2.39 -0.02 2.01 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.69 6.42 -2.39 -0.02 1.68 16 30 H 0.07 3.42 6.25 -2.39 -0.01 3.40 16 31 H 0.03 1.12 7.24 -2.39 -0.02 1.10 16 32 H 0.26 13.99 8.31 -92.70 -0.77 13.22 16 33 H 0.33 13.58 6.55 -89.69 -0.59 12.99 16 34 H 0.10 3.43 8.13 -2.38 -0.02 3.41 16 35 H 0.04 1.28 7.23 -2.39 -0.02 1.26 16 36 H 0.16 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.18 2.78 7.26 -2.91 -0.02 2.76 16 38 H 0.16 1.58 6.99 -2.91 -0.02 1.56 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 2.11 8.06 -2.91 -0.02 2.08 16 41 H 0.13 2.78 7.91 -2.91 -0.02 2.76 16 Total: -1.00 -60.58 346.61 4.15 -56.43 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.47 Total: 23.09 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 3.83 Total: -34.28 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.87 Total: -82.84 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.07 Total: -5.92 kcal Atomic # 9 Polarization: -2.61 SS G_CDS: 0.78 Total: -1.83 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -60.58 4.15 -56.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054182834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.089 kcal (2) G-P(sol) polarization free energy of solvation -60.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds