Wall clock time and date at job start Tue Mar 31 2020 08:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 H 1.08998 * 109.47176 * 304.99838 * 3 2 1 5 5 C 1.50705 * 109.46792 * 184.99777 * 3 2 1 6 6 H 1.07994 * 119.99880 * 239.99407 * 5 3 2 7 7 C 1.37878 * 120.00187 * 60.00435 * 5 3 2 8 8 N 1.31519 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47089 * 59.99908 * 9 7 5 11 11 H 1.48502 * 109.46980 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47063 * 299.99712 * 9 7 5 13 13 N 1.46495 * 109.47024 * 65.00004 * 3 2 1 14 14 C 1.34783 * 120.00024 * 274.99803 * 13 3 2 15 15 O 1.21584 * 119.99646 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00104 * 180.02562 * 14 13 3 17 17 C 1.40009 * 119.99837 * 184.58787 * 16 14 13 18 18 C 1.39294 * 119.84250 * 324.83623 * 17 16 14 19 19 C 1.36598 * 120.49367 * 180.02562 * 18 17 16 20 20 C 1.39610 * 119.93613 * 0.02562 * 19 18 17 21 21 N 1.36122 * 133.73068 * 180.02562 * 20 19 18 22 22 C 1.29872 * 108.81328 * 180.02562 * 21 20 19 23 23 C 1.50699 * 124.85689 * 179.97438 * 22 21 20 24 24 O 1.34290 * 110.29023 * 359.97438 * 22 21 20 25 25 C 1.35106 * 108.15730 * 0.02562 * 24 22 21 26 26 C 1.38543 * 119.83935 * 144.85765 * 17 16 14 27 27 H 1.08995 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47453 * 300.00269 * 1 2 3 29 29 H 1.09007 * 109.46908 * 60.00218 * 1 2 3 30 30 H 1.09003 * 109.47435 * 239.99793 * 2 1 3 31 31 H 1.08997 * 109.47436 * 119.99849 * 2 1 3 32 32 H 0.97000 * 120.00226 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00429 * 95.00156 * 13 3 2 34 34 H 0.97003 * 119.99884 * 4.58608 * 16 14 13 35 35 H 1.08000 * 119.75519 * 359.97438 * 18 17 16 36 36 H 1.07995 * 120.02890 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46949 * 270.02277 * 23 22 21 38 38 H 1.09003 * 109.46839 * 30.02224 * 23 22 21 39 39 H 1.09001 * 109.47216 * 150.02045 * 23 22 21 40 40 H 1.07999 * 120.16127 * 359.72750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1729 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2178 -2.6508 12 1 6.4996 2.2815 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6318 0.4320 16 7 0.0787 3.2674 2.5184 17 6 -1.2184 3.7715 2.6723 18 6 -1.8796 4.3288 1.5802 19 6 -3.1450 4.8250 1.7154 20 6 -3.7838 4.7758 2.9558 21 7 -5.0069 5.1745 3.4009 22 6 -5.1048 4.8932 4.6650 23 6 -6.3115 5.1811 5.5205 24 8 -3.9768 4.3091 5.1007 25 6 -3.1211 4.2165 4.0593 26 6 -1.8379 3.7142 3.9101 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0618 -2.9495 33 1 2.2719 2.1232 1.9978 34 1 0.7208 3.3521 3.2405 35 1 -1.3878 4.3695 0.6195 36 1 -3.6508 5.2550 0.8636 37 1 -6.2157 6.1732 5.9617 38 1 -7.2106 5.1422 4.9054 39 1 -6.3811 4.4361 6.3131 40 1 -1.3245 3.2779 4.7542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155661942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:15 Heat of formation + Delta-G solvation = 9.523818 kcal Electronic energy + Delta-G solvation = -24045.682759 eV Core-core repulsion = 20441.173299 eV Total energy + Delta-G solvation = -3604.509461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.24449 -40.19034 -37.94082 -35.48483 -34.87108 -33.97812 -32.46892 -31.39941 -30.87550 -30.32162 -27.61416 -26.58985 -23.54435 -23.15963 -22.29901 -21.74840 -20.75889 -19.60418 -18.54705 -18.11266 -17.22235 -16.89509 -16.57233 -15.80151 -15.29282 -14.83106 -14.49128 -14.27756 -14.03020 -13.92875 -13.55412 -13.45378 -13.22146 -12.72872 -12.68543 -12.58046 -12.16602 -11.67628 -11.59286 -11.36571 -11.28649 -11.02704 -10.86263 -10.54683 -10.36930 -10.23974 -9.87911 -9.60262 -9.47043 -9.10125 -8.76631 -8.55252 -8.05558 -7.73290 -6.16827 -4.26679 0.66138 1.29470 2.26988 2.34713 3.11071 3.22607 3.28575 3.30082 3.53255 3.74394 3.87661 4.28037 4.50122 4.80001 4.81862 4.98710 5.02419 5.09133 5.14811 5.20900 5.34032 5.41510 5.82537 5.95222 6.10148 6.14279 6.29371 6.37838 6.44721 6.52390 6.63297 6.91263 6.93767 7.07376 7.27962 7.31422 7.38434 7.57203 7.59511 7.80270 7.90240 8.13552 8.65023 8.76251 9.13518 9.41082 10.88412 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.002742 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.833871 B =10209.685438 C =10351.828268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.715 5.715 14 C 0.693 3.307 15 O -0.572 6.572 16 N -0.693 5.693 17 C 0.219 3.781 18 C -0.115 4.115 19 C -0.043 4.043 20 C -0.005 4.005 21 N -0.473 5.473 22 C 0.227 3.773 23 C -0.060 4.060 24 O -0.217 6.217 25 C 0.031 3.969 26 C -0.144 4.144 27 H 0.021 0.979 28 H 0.037 0.963 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.031 0.969 32 H 0.266 0.734 33 H 0.387 0.613 34 H 0.405 0.595 35 H 0.160 0.840 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 7.764 14.743 20.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.069 0.931 5 C -0.575 4.575 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.366 5.366 14 C 0.394 3.606 15 O -0.449 6.449 16 N -0.341 5.341 17 C 0.121 3.879 18 C -0.136 4.136 19 C -0.062 4.062 20 C -0.117 4.117 21 N -0.204 5.204 22 C 0.015 3.985 23 C -0.117 4.117 24 O -0.109 6.109 25 C -0.019 4.019 26 C -0.166 4.166 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.118 0.882 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.219 0.781 34 H 0.241 0.759 35 H 0.177 0.823 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.393 7.817 13.229 20.383 hybrid contribution 2.158 -0.422 1.114 2.465 sum -11.235 7.394 14.343 19.663 Atomic orbital electron populations 1.21819 0.98230 0.98007 1.01270 1.21965 0.92702 0.99803 1.02302 1.18758 0.94070 0.88934 0.79773 0.93068 1.21168 0.90563 1.39360 1.06396 0.92117 1.24874 0.98648 0.94742 0.95342 1.69881 1.35275 1.37318 1.09334 0.86497 0.84733 0.78318 0.77482 1.20174 1.21107 1.20184 1.45865 1.13084 1.58194 1.19447 1.16087 0.83813 0.78717 0.82011 1.90899 1.51723 1.64452 1.37817 1.42873 1.11360 1.61230 1.18659 1.17096 0.85021 0.93118 0.92620 1.21154 0.94874 0.97240 1.00360 1.19964 0.93720 0.98225 0.94332 1.19808 0.91258 1.04758 0.95826 1.70533 1.18525 1.22246 1.09055 1.26311 0.88312 0.93319 0.90529 1.20339 0.89714 1.03724 0.97936 1.84441 1.24030 1.65811 1.36663 1.19739 0.93144 1.03191 0.85847 1.19258 0.91374 1.07503 0.98485 0.95943 0.94357 0.93069 0.88192 0.95063 0.92415 0.78100 0.75944 0.82256 0.84476 0.88665 0.87898 0.89134 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.16 0.32 -2.69 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.88 2.24 -69.08 -0.15 6.73 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.06 11.29 55.43 0.63 -23.43 16 9 Si 0.90 20.09 29.54 -169.99 -5.02 15.06 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 11 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.72 -13.83 5.03 -59.81 -0.30 -14.13 16 14 C 0.69 12.91 6.97 -86.91 -0.61 12.31 16 15 O -0.57 -12.49 10.89 5.29 0.06 -12.43 16 16 N -0.69 -9.85 5.34 -14.18 -0.08 -9.93 16 17 C 0.22 3.19 6.30 -83.62 -0.53 2.66 16 18 C -0.12 -1.77 8.62 -39.78 -0.34 -2.11 16 19 C -0.04 -0.62 10.04 -39.66 -0.40 -1.02 16 20 C 0.00 -0.07 7.24 -84.66 -0.61 -0.68 16 21 N -0.47 -6.74 11.34 -8.67 -0.10 -6.84 16 22 C 0.23 2.62 8.24 -13.11 -0.11 2.51 16 23 C -0.06 -0.34 10.51 36.01 0.38 0.04 16 24 O -0.22 -2.84 10.77 3.48 0.04 -2.81 16 25 C 0.03 0.45 7.43 -38.65 -0.29 0.16 16 26 C -0.14 -1.89 9.98 -39.33 -0.39 -2.28 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 29 H 0.05 1.20 7.84 -51.92 -0.41 0.79 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 33 H 0.39 6.35 8.56 -40.82 -0.35 6.00 16 34 H 0.41 4.31 8.84 -40.82 -0.36 3.95 16 35 H 0.16 2.69 6.20 -52.49 -0.33 2.37 16 36 H 0.14 1.73 8.06 -52.49 -0.42 1.31 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 334.54 15.07 5.04 5.04 Total: -1.00 -31.40 334.54 -7.95 -39.35 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -4.94 Total: 9.91 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -3.27 Total: 0.20 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: 0.15 Total: -54.33 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: 0.10 Total: -15.24 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.40 -7.95 -39.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155661942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.871 kcal (2) G-P(sol) polarization free energy of solvation -31.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds