Wall clock time and date at job start Tue Mar 31 2020 08:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47051 * 2 1 4 4 H 1.08998 * 109.47176 * 304.99838 * 3 2 1 5 5 C 1.50705 * 109.46792 * 184.99777 * 3 2 1 6 6 H 1.07994 * 119.99880 * 239.99407 * 5 3 2 7 7 C 1.37878 * 120.00187 * 60.00435 * 5 3 2 8 8 N 1.31519 * 119.99802 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00094 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47089 * 59.99908 * 9 7 5 11 11 H 1.48502 * 109.46980 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47063 * 299.99712 * 9 7 5 13 13 N 1.46495 * 109.47024 * 65.00004 * 3 2 1 14 14 C 1.34783 * 120.00024 * 274.99803 * 13 3 2 15 15 O 1.21584 * 119.99646 * 0.02562 * 14 13 3 16 16 N 1.34777 * 120.00104 * 180.02562 * 14 13 3 17 17 C 1.40009 * 119.99837 * 184.58787 * 16 14 13 18 18 C 1.39294 * 119.84250 * 324.83623 * 17 16 14 19 19 C 1.36598 * 120.49367 * 180.02562 * 18 17 16 20 20 C 1.39610 * 119.93613 * 0.02562 * 19 18 17 21 21 N 1.36122 * 133.73068 * 180.02562 * 20 19 18 22 22 C 1.29872 * 108.81328 * 180.02562 * 21 20 19 23 23 C 1.50699 * 124.85689 * 179.97438 * 22 21 20 24 24 O 1.34290 * 110.29023 * 359.97438 * 22 21 20 25 25 C 1.35106 * 108.15730 * 0.02562 * 24 22 21 26 26 C 1.38543 * 119.83935 * 144.85765 * 17 16 14 27 27 H 1.08995 * 109.47111 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47453 * 300.00269 * 1 2 3 29 29 H 1.09007 * 109.46908 * 60.00218 * 1 2 3 30 30 H 1.09003 * 109.47435 * 239.99793 * 2 1 3 31 31 H 1.08997 * 109.47436 * 119.99849 * 2 1 3 32 32 H 0.97000 * 120.00226 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00429 * 95.00156 * 13 3 2 34 34 H 0.97003 * 119.99884 * 4.58608 * 16 14 13 35 35 H 1.08000 * 119.75519 * 359.97438 * 18 17 16 36 36 H 1.07995 * 120.02890 * 180.02562 * 19 18 17 37 37 H 1.09004 * 109.46949 * 270.02277 * 23 22 21 38 38 H 1.09003 * 109.46839 * 30.02224 * 23 22 21 39 39 H 1.09001 * 109.47216 * 150.02045 * 23 22 21 40 40 H 1.07999 * 120.16127 * 359.72750 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1729 9 14 6.0050 0.8812 -1.3817 10 1 6.5975 0.1472 -0.2348 11 1 6.3978 0.2178 -2.6508 12 1 6.4996 2.2815 -1.3820 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3415 2.6318 0.4320 16 7 0.0787 3.2674 2.5184 17 6 -1.2184 3.7715 2.6723 18 6 -1.8796 4.3288 1.5802 19 6 -3.1450 4.8250 1.7154 20 6 -3.7838 4.7758 2.9558 21 7 -5.0069 5.1745 3.4009 22 6 -5.1048 4.8932 4.6650 23 6 -6.3115 5.1811 5.5205 24 8 -3.9768 4.3091 5.1007 25 6 -3.1211 4.2165 4.0593 26 6 -1.8379 3.7142 3.9101 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.8294 -0.0618 -2.9495 33 1 2.2719 2.1232 1.9978 34 1 0.7208 3.3521 3.2405 35 1 -1.3878 4.3695 0.6195 36 1 -3.6508 5.2550 0.8636 37 1 -6.2157 6.1732 5.9617 38 1 -7.2106 5.1422 4.9054 39 1 -6.3811 4.4361 6.3131 40 1 -1.3245 3.2779 4.7542 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155661942.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:12:14 Heat of formation + Delta-G solvation = -13.615911 kcal Electronic energy + Delta-G solvation = -24046.686173 eV Core-core repulsion = 20441.173299 eV Total energy + Delta-G solvation = -3605.512875 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.25719 -41.58800 -39.22680 -37.07825 -36.09409 -35.22568 -34.26190 -32.78423 -32.09970 -31.40955 -29.12754 -27.98089 -25.11676 -24.52582 -23.50580 -22.86098 -22.09055 -21.37257 -20.01538 -19.29814 -18.35975 -18.14208 -17.89062 -17.26627 -16.98996 -16.35868 -16.04684 -15.36363 -15.26003 -15.02888 -14.84781 -14.53757 -14.35594 -14.09037 -13.95213 -13.55926 -13.43564 -13.27257 -13.15358 -12.88949 -12.73720 -12.64539 -12.43213 -12.17033 -12.06292 -11.58977 -11.56839 -11.16976 -11.03179 -10.88157 -10.51426 -9.89007 -9.69888 -8.93288 -8.14140 -6.31015 -0.38331 0.16330 1.23020 1.34488 1.47482 1.48589 1.56245 1.88618 2.17474 2.43802 2.64069 2.87978 3.15646 3.40027 3.48438 3.93780 4.00729 4.03792 4.28642 4.51752 4.53406 4.59416 4.66477 4.73910 4.77547 4.86716 4.94458 5.00628 5.09106 5.11011 5.26711 5.28068 5.40418 5.46039 5.55386 5.62534 5.73545 5.76471 5.88024 6.18360 6.24522 6.57417 6.76737 7.22617 7.36955 7.68743 8.90945 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.040057 B = 0.002742 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.833871 B =10209.685438 C =10351.828268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.296 3.704 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.265 1.265 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.711 5.711 14 C 0.695 3.305 15 O -0.607 6.607 16 N -0.672 5.672 17 C 0.200 3.800 18 C -0.125 4.125 19 C -0.051 4.051 20 C -0.018 4.018 21 N -0.510 5.510 22 C 0.243 3.757 23 C -0.060 4.060 24 O -0.218 6.218 25 C 0.015 3.985 26 C -0.122 4.122 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.026 0.974 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.265 0.735 33 H 0.404 0.596 34 H 0.425 0.575 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.539 8.029 17.795 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C 0.193 3.807 4 H 0.021 0.979 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.794 3.206 10 H -0.190 1.190 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.364 5.364 14 C 0.395 3.605 15 O -0.487 6.487 16 N -0.322 5.322 17 C 0.103 3.897 18 C -0.146 4.146 19 C -0.071 4.071 20 C -0.129 4.129 21 N -0.240 5.240 22 C 0.032 3.968 23 C -0.117 4.117 24 O -0.111 6.111 25 C -0.036 4.036 26 C -0.144 4.144 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.239 0.761 34 H 0.264 0.736 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.137 0.863 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -13.561 8.114 16.356 22.743 hybrid contribution 2.019 -0.419 0.259 2.078 sum -11.542 7.695 16.615 21.645 Atomic orbital electron populations 1.21646 0.97101 0.98848 1.00226 1.21811 0.93578 0.99344 1.01318 1.18290 0.93441 0.88789 0.80197 0.97907 1.21533 0.91324 1.38965 1.06704 0.90858 1.25733 1.03115 0.94451 0.95081 1.70039 1.37073 1.38257 1.09864 0.85446 0.79311 0.78384 0.77466 1.18958 1.21436 1.19722 1.45437 1.13924 1.58383 1.18624 1.16120 0.83102 0.78583 0.82675 1.90891 1.52645 1.65592 1.39534 1.42426 1.11837 1.60173 1.17750 1.17106 0.85154 0.94331 0.93099 1.21011 0.95395 0.98234 0.99951 1.20011 0.93574 0.98574 0.94919 1.20046 0.91962 1.04711 0.96161 1.70572 1.18468 1.24347 1.10604 1.27584 0.88635 0.90238 0.90348 1.20742 0.87337 1.05701 0.97934 1.84471 1.24340 1.66033 1.36232 1.19929 0.93794 1.03791 0.86087 1.19414 0.90832 1.05685 0.98492 0.94015 0.93998 0.95442 0.90946 0.94048 0.92616 0.76146 0.73614 0.84421 0.83686 0.86257 0.86707 0.86729 0.81615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.83 5.45 30.60 0.17 -5.66 16 3 C 0.30 14.56 2.24 44.25 0.10 14.66 16 4 H 0.00 0.18 7.58 -2.39 -0.02 0.16 16 5 C -0.55 -27.77 8.73 25.60 0.22 -27.55 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.86 5.29 84.65 0.45 1.31 16 8 N -0.91 -51.20 11.29 21.45 0.24 -50.96 16 9 Si 0.97 41.03 29.54 68.60 2.03 43.05 16 10 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 13 N -0.71 -27.37 5.03 -461.40 -2.32 -29.68 16 14 C 0.69 25.97 6.97 179.05 1.25 27.22 16 15 O -0.61 -27.46 10.89 -3.98 -0.04 -27.51 16 16 N -0.67 -18.41 5.34 -317.04 -1.69 -20.10 16 17 C 0.20 5.69 6.30 38.16 0.24 5.93 16 18 C -0.12 -3.94 8.62 22.14 0.19 -3.75 16 19 C -0.05 -1.52 10.04 22.22 0.22 -1.30 16 20 C -0.02 -0.52 7.24 39.32 0.28 -0.24 16 21 N -0.51 -13.99 11.34 -296.15 -3.36 -17.35 16 22 C 0.24 5.06 8.24 88.40 0.73 5.79 16 23 C -0.06 -0.47 10.51 71.24 0.75 0.27 16 24 O -0.22 -5.20 10.77 -10.45 -0.11 -5.31 16 25 C 0.01 0.40 7.43 22.87 0.17 0.57 16 26 C -0.12 -2.98 9.98 22.43 0.22 -2.76 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 29 H 0.03 1.32 7.84 -2.38 -0.02 1.30 16 30 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 33 H 0.40 12.69 8.56 -92.71 -0.79 11.90 16 34 H 0.42 8.12 8.84 -92.71 -0.82 7.30 16 35 H 0.14 4.97 6.20 -2.91 -0.02 4.95 16 36 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 37 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.11 0.41 8.14 -2.39 -0.02 0.40 16 40 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -70.16 334.54 -0.16 -70.32 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.51 Total: 27.83 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.61 Total: 9.71 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -7.13 Total: -118.09 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -0.16 Total: -32.82 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -70.16 -0.16 -70.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155661942.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.709 kcal (2) G-P(sol) polarization free energy of solvation -70.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds