Wall clock time and date at job start Tue Mar 31 2020 08:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47326 * 2 1 4 4 N 1.46497 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00150 * 269.58176 * 4 3 2 6 6 H 1.07993 * 120.00271 * 322.01089 * 5 4 3 7 7 C 1.38815 * 119.99684 * 142.01434 * 5 4 3 8 8 N 1.31625 * 119.99575 * 157.07395 * 7 5 4 9 9 Si 1.86793 * 120.00324 * 337.07062 * 7 5 4 10 10 H 1.48503 * 109.47233 * 95.70240 * 9 7 5 11 11 H 1.48502 * 109.47325 * 215.70302 * 9 7 5 12 12 H 1.48500 * 109.47179 * 335.70666 * 9 7 5 13 13 C 1.46506 * 119.99693 * 89.58149 * 4 3 2 14 14 C 1.50691 * 109.47158 * 90.00027 * 13 4 3 15 15 C 1.34726 * 125.66547 * 89.99869 * 14 13 4 16 16 C 1.40957 * 107.02977 * 180.02562 * 15 14 13 17 17 C 1.35943 * 106.74211 * 359.97438 * 16 15 14 18 18 C 1.47795 * 125.93152 * 180.02562 * 17 16 15 19 19 C 1.39595 * 120.11999 * 359.68117 * 18 17 16 20 20 C 1.37922 * 119.87803 * 179.74045 * 19 18 17 21 21 C 1.38580 * 120.11867 * 0.53320 * 20 19 18 22 22 F 1.35103 * 119.87509 * 179.69963 * 21 20 19 23 23 C 1.38580 * 120.24432 * 359.71866 * 21 20 19 24 24 C 1.37924 * 120.11914 * 0.02585 * 23 21 20 25 25 O 1.34327 * 125.66353 * 270.02285 * 14 13 4 26 26 H 1.08998 * 109.47397 * 59.99674 * 1 2 3 27 27 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47350 * 299.99949 * 1 2 3 29 29 H 1.08999 * 109.47047 * 240.00504 * 2 1 3 30 30 H 1.08998 * 109.47397 * 120.00326 * 2 1 3 31 31 H 1.08999 * 109.46646 * 60.00258 * 3 2 1 32 32 H 1.08998 * 109.47149 * 300.00478 * 3 2 1 33 33 H 0.96996 * 119.99515 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46918 * 329.99841 * 13 4 3 35 35 H 1.08998 * 109.46864 * 209.99918 * 13 4 3 36 36 H 1.07999 * 126.48486 * 359.75715 * 15 14 13 37 37 H 1.07999 * 126.62421 * 179.97438 * 16 15 14 38 38 H 1.08006 * 120.05828 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.93936 * 180.25660 * 20 19 18 40 40 H 1.08001 * 119.93692 * 179.97438 * 23 21 20 41 41 H 1.08005 * 120.05808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4513 1.1867 6 1 3.8205 2.0332 2.0185 7 6 5.3567 0.7123 1.3200 8 7 6.2429 1.0415 2.2359 9 14 5.6701 -0.7491 0.1996 10 1 6.5093 -0.3216 -0.9486 11 1 6.3751 -1.8128 0.9590 12 1 4.3752 -1.2746 -0.3024 13 6 4.2380 1.4330 -1.2679 14 6 4.4893 2.8505 -1.7134 15 6 5.5681 3.5934 -1.3980 16 6 5.4006 4.8483 -2.0177 17 6 4.2168 4.8009 -2.6844 18 6 3.6268 5.8956 -3.4831 19 6 4.2932 7.1169 -3.5977 20 6 3.7407 8.1332 -4.3487 21 6 2.5210 7.9475 -4.9797 22 9 1.9813 8.9485 -5.7092 23 6 1.8526 6.7390 -4.8650 24 6 2.3985 5.7141 -4.1208 25 8 3.6748 3.5832 -2.4905 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 7.0585 0.5249 2.3292 34 1 3.6491 0.9135 -2.0238 35 1 5.1903 0.9202 -1.1333 36 1 6.4012 3.2871 -0.7828 37 1 6.0812 5.6856 -1.9717 38 1 5.2416 7.2643 -3.1023 39 1 4.2574 9.0770 -4.4414 40 1 0.9021 6.5998 -5.3585 41 1 1.8769 4.7724 -4.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179555741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:44 Heat of formation + Delta-G solvation = 8.941023 kcal Electronic energy + Delta-G solvation = -23961.652354 eV Core-core repulsion = 20337.197660 eV Total energy + Delta-G solvation = -3624.454694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.03860 -42.01300 -38.91393 -36.58746 -33.16340 -32.73063 -31.99848 -31.30061 -31.09291 -28.71177 -25.98173 -25.42768 -23.36692 -22.72389 -22.05462 -20.90535 -20.23420 -19.70098 -18.00800 -17.35806 -16.75387 -16.24189 -15.79826 -15.64997 -15.33615 -14.97748 -14.50500 -14.22778 -13.99063 -13.77876 -13.52217 -13.07236 -13.04749 -12.74141 -12.55202 -12.53959 -12.38840 -12.30100 -11.83251 -11.37165 -11.29121 -11.12481 -10.89106 -10.76917 -10.56324 -10.23297 -9.95709 -9.70772 -9.64114 -9.32353 -9.05730 -8.66508 -7.44625 -7.04896 -6.13257 -3.55392 0.65296 1.06548 2.32290 3.10354 3.19275 3.23100 3.39274 3.42558 3.66071 4.08693 4.38488 4.55097 4.67306 4.75750 4.94424 5.06488 5.16482 5.19111 5.44309 5.51723 5.57590 5.66962 5.69384 5.75827 5.88908 5.92948 5.96184 5.97958 6.09781 6.14008 6.22147 6.35240 6.39166 6.45907 6.49550 6.57375 6.60651 6.71467 6.81631 7.00235 7.08107 7.70415 7.89613 8.27376 8.80762 9.54788 9.93792 11.01569 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.003687 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.371971 B = 7592.054699 C = 8653.794188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.149 3.851 4 N -0.589 5.589 5 C -0.271 4.271 6 H 0.081 0.919 7 C 0.042 3.958 8 N -0.889 5.889 9 Si 0.862 3.138 10 H -0.282 1.282 11 H -0.296 1.296 12 H -0.262 1.262 13 C 0.204 3.796 14 C 0.016 3.984 15 C -0.205 4.205 16 C -0.170 4.170 17 C -0.020 4.020 18 C 0.001 3.999 19 C -0.080 4.080 20 C -0.146 4.146 21 C 0.086 3.914 22 F -0.142 7.142 23 C -0.147 4.147 24 C -0.083 4.083 25 O -0.173 6.173 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.183 8.375 -12.791 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.024 3.976 4 N -0.309 5.309 5 C -0.400 4.400 6 H 0.098 0.902 7 C -0.159 4.159 8 N -0.529 5.529 9 Si 0.691 3.309 10 H -0.210 1.210 11 H -0.224 1.224 12 H -0.186 1.186 13 C 0.077 3.923 14 C -0.038 4.038 15 C -0.225 4.225 16 C -0.190 4.190 17 C -0.070 4.070 18 C 0.001 3.999 19 C -0.098 4.098 20 C -0.165 4.165 21 C 0.067 3.933 22 F -0.121 7.121 23 C -0.166 4.166 24 C -0.101 4.101 25 O -0.070 6.070 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.347 8.269 -12.796 16.505 hybrid contribution 0.491 -0.533 -0.458 0.857 sum -5.856 7.736 -13.255 16.426 Atomic orbital electron populations 1.21720 0.97006 1.00633 1.01112 1.22101 0.94008 1.00327 1.01996 1.21001 0.83269 0.93833 0.99508 1.44226 1.00883 1.84528 1.01282 1.18786 1.06400 1.24336 0.90465 0.90157 1.25463 0.96592 0.97502 0.96392 1.69884 1.08297 1.38933 1.35779 0.87138 0.78554 0.84919 0.80271 1.21021 1.22371 1.18602 1.20116 0.98376 0.85353 0.88463 1.24611 0.89177 0.97315 0.92696 1.21551 1.01724 0.93807 1.05467 1.21744 0.97200 0.99166 1.00870 1.20058 0.95260 0.85989 1.05691 1.17841 0.94442 0.91099 0.96533 1.20917 1.00085 0.90973 0.97875 1.20990 0.95161 1.00747 0.99599 1.17778 0.93914 0.85900 0.95675 1.91488 1.85795 1.59551 1.75282 1.21050 1.01361 0.92240 1.01915 1.21151 0.94492 0.99113 0.95345 1.84016 1.45236 1.21832 1.55868 0.93432 0.93609 0.93020 0.93151 0.91568 0.92763 0.94119 0.92470 0.92256 0.89505 0.83235 0.83929 0.84419 0.84384 0.84532 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.15 0.37 -1.67 16 2 C -0.14 -2.54 6.26 -26.73 -0.17 -2.70 16 3 C 0.15 2.90 5.67 -4.04 -0.02 2.87 16 4 N -0.59 -13.40 2.05 -174.61 -0.36 -13.76 16 5 C -0.27 -7.21 9.90 -15.06 -0.15 -7.36 16 6 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.04 1.15 5.29 -17.43 -0.09 1.05 16 8 N -0.89 -25.76 13.97 55.49 0.78 -24.99 16 9 Si 0.86 20.56 25.10 -169.99 -4.27 16.29 16 10 H -0.28 -6.50 6.68 56.52 0.38 -6.12 16 11 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.26 -6.04 7.11 56.52 0.40 -5.63 16 13 C 0.20 4.31 5.04 -5.19 -0.03 4.28 16 14 C 0.02 0.33 6.90 -35.56 -0.25 0.08 16 15 C -0.21 -4.11 10.78 -39.80 -0.43 -4.54 16 16 C -0.17 -2.90 10.26 -39.38 -0.40 -3.30 16 17 C -0.02 -0.34 7.03 -36.50 -0.26 -0.60 16 18 C 0.00 0.02 5.87 -104.98 -0.62 -0.60 16 19 C -0.08 -0.92 9.56 -39.19 -0.37 -1.30 16 20 C -0.15 -1.52 10.01 -39.57 -0.40 -1.92 16 21 C 0.09 0.97 7.30 -39.33 -0.29 0.68 16 22 F -0.14 -1.63 17.26 2.25 0.04 -1.59 16 23 C -0.15 -1.60 10.01 -39.57 -0.40 -2.00 16 24 C -0.08 -1.03 9.72 -39.19 -0.38 -1.41 16 25 O -0.17 -3.26 10.41 4.58 0.05 -3.21 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 32 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.06 1.11 8.07 -51.93 -0.42 0.70 16 35 H 0.09 1.95 3.38 -51.93 -0.18 1.78 16 36 H 0.15 3.13 8.06 -52.49 -0.42 2.70 16 37 H 0.14 1.97 7.26 -52.49 -0.38 1.58 16 38 H 0.14 1.34 6.99 -52.48 -0.37 0.97 16 39 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.14 1.63 7.91 -52.48 -0.42 1.22 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -28.92 350.16 -7.92 -36.84 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -5.56 Total: 3.57 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.88 Total: -18.43 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.42 Total: -38.75 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.05 Total: -3.21 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.04 Total: -1.59 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.27 Total: 16.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.92 -7.92 -36.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179555741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.783 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds