Wall clock time and date at job start Tue Mar 31 2020 08:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47326 * 2 1 4 4 N 1.46497 * 109.47192 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00150 * 269.58176 * 4 3 2 6 6 H 1.07993 * 120.00271 * 322.01089 * 5 4 3 7 7 C 1.38815 * 119.99684 * 142.01434 * 5 4 3 8 8 N 1.31625 * 119.99575 * 157.07395 * 7 5 4 9 9 Si 1.86793 * 120.00324 * 337.07062 * 7 5 4 10 10 H 1.48503 * 109.47233 * 95.70240 * 9 7 5 11 11 H 1.48502 * 109.47325 * 215.70302 * 9 7 5 12 12 H 1.48500 * 109.47179 * 335.70666 * 9 7 5 13 13 C 1.46506 * 119.99693 * 89.58149 * 4 3 2 14 14 C 1.50691 * 109.47158 * 90.00027 * 13 4 3 15 15 C 1.34726 * 125.66547 * 89.99869 * 14 13 4 16 16 C 1.40957 * 107.02977 * 180.02562 * 15 14 13 17 17 C 1.35943 * 106.74211 * 359.97438 * 16 15 14 18 18 C 1.47795 * 125.93152 * 180.02562 * 17 16 15 19 19 C 1.39595 * 120.11999 * 359.68117 * 18 17 16 20 20 C 1.37922 * 119.87803 * 179.74045 * 19 18 17 21 21 C 1.38580 * 120.11867 * 0.53320 * 20 19 18 22 22 F 1.35103 * 119.87509 * 179.69963 * 21 20 19 23 23 C 1.38580 * 120.24432 * 359.71866 * 21 20 19 24 24 C 1.37924 * 120.11914 * 0.02585 * 23 21 20 25 25 O 1.34327 * 125.66353 * 270.02285 * 14 13 4 26 26 H 1.08998 * 109.47397 * 59.99674 * 1 2 3 27 27 H 1.08995 * 109.47370 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47350 * 299.99949 * 1 2 3 29 29 H 1.08999 * 109.47047 * 240.00504 * 2 1 3 30 30 H 1.08998 * 109.47397 * 120.00326 * 2 1 3 31 31 H 1.08999 * 109.46646 * 60.00258 * 3 2 1 32 32 H 1.08998 * 109.47149 * 300.00478 * 3 2 1 33 33 H 0.96996 * 119.99515 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.46918 * 329.99841 * 13 4 3 35 35 H 1.08998 * 109.46864 * 209.99918 * 13 4 3 36 36 H 1.07999 * 126.48486 * 359.75715 * 15 14 13 37 37 H 1.07999 * 126.62421 * 179.97438 * 16 15 14 38 38 H 1.08006 * 120.05828 * 359.97438 * 19 18 17 39 39 H 1.07998 * 119.93936 * 180.25660 * 20 19 18 40 40 H 1.08001 * 119.93692 * 179.97438 * 23 21 20 41 41 H 1.08005 * 120.05808 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1892 1.4513 1.1867 6 1 3.8205 2.0332 2.0185 7 6 5.3567 0.7123 1.3200 8 7 6.2429 1.0415 2.2359 9 14 5.6701 -0.7491 0.1996 10 1 6.5093 -0.3216 -0.9486 11 1 6.3751 -1.8128 0.9590 12 1 4.3752 -1.2746 -0.3024 13 6 4.2380 1.4330 -1.2679 14 6 4.4893 2.8505 -1.7134 15 6 5.5681 3.5934 -1.3980 16 6 5.4006 4.8483 -2.0177 17 6 4.2168 4.8009 -2.6844 18 6 3.6268 5.8956 -3.4831 19 6 4.2932 7.1169 -3.5977 20 6 3.7407 8.1332 -4.3487 21 6 2.5210 7.9475 -4.9797 22 9 1.9813 8.9485 -5.7092 23 6 1.8526 6.7390 -4.8650 24 6 2.3985 5.7141 -4.1208 25 8 3.6748 3.5832 -2.4905 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 7.0585 0.5249 2.3292 34 1 3.6491 0.9135 -2.0238 35 1 5.1903 0.9202 -1.1333 36 1 6.4012 3.2871 -0.7828 37 1 6.0812 5.6856 -1.9717 38 1 5.2416 7.2643 -3.1023 39 1 4.2574 9.0770 -4.4414 40 1 0.9021 6.5998 -5.3585 41 1 1.8769 4.7724 -4.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179555741.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:14:43 Heat of formation + Delta-G solvation = -4.600406 kcal Electronic energy + Delta-G solvation = -23962.239554 eV Core-core repulsion = 20337.197660 eV Total energy + Delta-G solvation = -3625.041895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.138 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.92861 -43.44184 -39.84907 -38.28977 -34.72159 -34.08822 -33.68495 -32.54774 -32.16261 -30.11836 -27.58489 -26.95508 -24.33672 -24.07309 -23.41173 -22.28820 -21.68295 -21.17386 -19.28297 -18.76701 -18.08271 -17.38364 -17.14602 -17.02322 -16.60359 -16.31059 -16.08361 -15.61527 -15.23115 -14.70858 -14.63747 -14.58034 -14.49878 -14.16322 -14.10205 -13.94660 -13.74729 -13.50707 -13.01719 -12.86579 -12.80256 -12.51093 -12.31222 -12.20581 -12.03324 -11.99888 -11.59639 -11.39918 -10.92602 -10.69455 -10.32003 -10.17866 -8.95369 -8.71403 -8.23390 -5.63992 -0.37927 0.20776 1.00514 1.28315 1.41278 1.51018 1.71256 1.88204 2.38348 2.66345 3.03256 3.20355 3.34421 3.52440 3.71425 3.87275 3.98355 4.12649 4.20217 4.22010 4.23670 4.34300 4.45075 4.55731 4.64507 4.72357 4.75758 4.89201 4.89487 4.91509 5.02448 5.03170 5.07598 5.15557 5.25215 5.28620 5.38045 5.39720 5.56501 5.62214 5.80028 5.89831 6.13820 6.26843 6.88437 7.53123 7.95902 8.95627 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.003687 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.371971 B = 7592.054699 C = 8653.794188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.138 4.138 3 C 0.148 3.852 4 N -0.601 5.601 5 C -0.262 4.262 6 H 0.038 0.962 7 C -0.006 4.006 8 N -0.939 5.939 9 Si 0.924 3.076 10 H -0.270 1.270 11 H -0.305 1.305 12 H -0.246 1.246 13 C 0.205 3.795 14 C -0.009 4.009 15 C -0.221 4.221 16 C -0.183 4.183 17 C -0.004 4.004 18 C -0.029 4.029 19 C -0.073 4.073 20 C -0.142 4.142 21 C 0.087 3.913 22 F -0.142 7.142 23 C -0.146 4.146 24 C -0.085 4.085 25 O -0.177 6.177 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.041 0.959 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.130 0.870 37 H 0.173 0.827 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.159 0.841 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 9.437 -15.639 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.178 4.178 3 C 0.023 3.977 4 N -0.322 5.322 5 C -0.391 4.391 6 H 0.056 0.944 7 C -0.204 4.204 8 N -0.581 5.581 9 Si 0.751 3.249 10 H -0.197 1.197 11 H -0.233 1.233 12 H -0.170 1.170 13 C 0.078 3.922 14 C -0.063 4.063 15 C -0.241 4.241 16 C -0.202 4.202 17 C -0.053 4.053 18 C -0.030 4.030 19 C -0.091 4.091 20 C -0.160 4.160 21 C 0.068 3.932 22 F -0.121 7.121 23 C -0.164 4.164 24 C -0.103 4.103 25 O -0.074 6.074 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.148 0.852 37 H 0.191 0.809 38 H 0.173 0.827 39 H 0.183 0.817 40 H 0.176 0.824 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.816 9.334 -15.680 19.851 hybrid contribution 0.837 -0.593 0.317 1.074 sum -6.979 8.740 -15.362 19.003 Atomic orbital electron populations 1.21653 0.93929 1.02031 1.02067 1.21989 0.96677 0.98272 1.00851 1.21108 0.81437 0.95381 0.99751 1.44292 1.02130 1.85118 1.00635 1.18549 1.06386 1.23086 0.91094 0.94432 1.25987 0.96411 0.99748 0.98208 1.70004 1.09147 1.40374 1.38590 0.86143 0.79073 0.81011 0.78688 1.19704 1.23284 1.16965 1.20002 0.97842 0.86167 0.88148 1.24216 0.90036 0.97400 0.94609 1.21603 1.01331 0.95564 1.05625 1.21985 0.98240 0.98977 1.01003 1.20659 0.94797 0.85522 1.04366 1.17952 0.95780 0.91162 0.98062 1.21137 1.00472 0.90098 0.97389 1.21269 0.94830 1.01468 0.98466 1.17997 0.94127 0.85880 0.95180 1.91498 1.85820 1.59533 1.75234 1.21239 1.02123 0.91651 1.01393 1.21227 0.94097 0.99690 0.95278 1.83973 1.45035 1.22652 1.55705 0.91772 0.92004 0.92796 0.92901 0.94045 0.93960 0.92336 0.92599 0.89643 0.91096 0.85181 0.80935 0.82694 0.81667 0.82353 0.84299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.14 -4.69 6.26 30.59 0.19 -4.50 16 3 C 0.15 5.68 5.67 86.38 0.49 6.17 16 4 N -0.60 -27.69 2.05 -706.35 -1.45 -29.14 16 5 C -0.26 -14.50 9.90 84.03 0.83 -13.67 16 6 H 0.04 2.36 8.06 -2.91 -0.02 2.34 16 7 C -0.01 -0.33 5.29 84.86 0.45 0.12 16 8 N -0.94 -56.91 13.97 21.65 0.30 -56.61 16 9 Si 0.92 43.43 25.10 68.60 1.72 45.15 16 10 H -0.27 -12.05 6.68 99.48 0.66 -11.38 16 11 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 12 H -0.25 -10.83 7.11 99.48 0.71 -10.13 16 13 C 0.20 8.60 5.04 85.63 0.43 9.03 16 14 C -0.01 -0.38 6.90 24.88 0.17 -0.20 16 15 C -0.22 -9.02 10.78 22.13 0.24 -8.78 16 16 C -0.18 -6.08 10.26 22.40 0.23 -5.85 16 17 C 0.00 -0.12 7.03 24.27 0.17 0.05 16 18 C -0.03 -0.74 5.87 -20.10 -0.12 -0.86 16 19 C -0.07 -1.45 9.56 22.52 0.22 -1.23 16 20 C -0.14 -2.42 10.01 22.28 0.22 -2.20 16 21 C 0.09 1.66 7.30 22.43 0.16 1.82 16 22 F -0.14 -2.78 17.26 44.97 0.78 -2.00 16 23 C -0.15 -2.72 10.01 22.28 0.22 -2.50 16 24 C -0.08 -1.90 9.72 22.52 0.22 -1.68 16 25 O -0.18 -6.53 10.41 -6.53 -0.07 -6.59 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.04 1.70 8.04 -2.39 -0.02 1.68 16 32 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 33 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.09 3.08 8.07 -2.39 -0.02 3.06 16 35 H 0.07 3.19 3.38 -2.39 -0.01 3.18 16 36 H 0.13 5.74 8.06 -2.91 -0.02 5.71 16 37 H 0.17 4.45 7.26 -2.91 -0.02 4.43 16 38 H 0.16 2.48 6.99 -2.91 -0.02 2.46 16 39 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.14 3.02 7.91 -2.91 -0.02 3.00 16 Total: -1.00 -65.06 350.16 7.11 -57.95 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.99 Total: 18.36 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 4.84 Total: -27.11 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -1.15 Total: -85.75 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.07 Total: -6.59 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.78 Total: -2.00 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 1.72 Total: 45.15 kcal Total: -65.06 7.11 -57.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179555741.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.348 kcal (2) G-P(sol) polarization free energy of solvation -65.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds