Wall clock time and date at job start Tue Mar 31 2020 08:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50705 * 119.99846 * 2 1 4 4 N 1.46500 * 109.47354 * 124.99563 * 3 2 1 5 5 C 1.34776 * 120.00071 * 179.97438 * 4 3 2 6 6 O 1.21281 * 119.99962 * 0.02562 * 5 4 3 7 7 C 1.50692 * 120.00109 * 180.02562 * 5 4 3 8 8 N 1.46504 * 109.47334 * 180.02562 * 7 5 4 9 9 C 1.34775 * 119.99968 * 180.02562 * 8 7 5 10 10 O 1.21581 * 120.00275 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99660 * 179.97438 * 9 8 7 12 12 C 1.39238 * 119.99647 * 184.29115 * 11 9 8 13 13 C 1.39490 * 119.83647 * 324.69823 * 12 11 9 14 14 C 1.36364 * 120.17166 * 180.30102 * 13 12 11 15 15 C 1.40873 * 119.82804 * 359.47909 * 14 13 12 16 16 C 1.41159 * 120.16700 * 180.25259 * 15 14 13 17 17 H 1.07994 * 120.00020 * 215.02006 * 16 15 14 18 18 C 1.39893 * 119.99767 * 35.01581 * 16 15 14 19 19 N 1.30880 * 119.99961 * 355.54049 * 18 16 15 20 20 Si 1.86796 * 119.99962 * 175.54569 * 18 16 15 21 21 H 1.48496 * 109.47393 * 90.00331 * 20 18 16 22 22 H 1.48502 * 109.47160 * 209.99900 * 20 18 16 23 23 H 1.48496 * 109.47164 * 329.99543 * 20 18 16 24 24 C 1.40875 * 119.67207 * 0.52306 * 15 14 13 25 25 C 1.36367 * 119.82519 * 359.72935 * 24 15 14 26 26 H 1.08005 * 120.00049 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.00177 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.99992 * 179.97438 * 2 1 3 29 29 H 1.08995 * 109.47256 * 4.99589 * 3 2 1 30 30 H 1.09003 * 109.46648 * 244.99749 * 3 2 1 31 31 H 0.97002 * 120.00011 * 0.02562 * 4 3 2 32 32 H 1.09001 * 109.47512 * 59.99500 * 7 5 4 33 33 H 1.09003 * 109.47061 * 299.99763 * 7 5 4 34 34 H 0.96997 * 119.99714 * 359.97438 * 8 7 5 35 35 H 0.96999 * 120.00338 * 4.28557 * 11 9 8 36 36 H 1.07999 * 119.90930 * 0.02712 * 13 12 11 37 37 H 1.07999 * 120.08778 * 179.70269 * 14 13 12 38 38 H 0.97001 * 119.99957 * 179.97438 * 19 18 16 39 39 H 1.07996 * 120.08670 * 179.70906 * 24 15 14 40 40 H 1.08005 * 119.91570 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3321 1.1315 5 6 3.7788 2.4088 1.3329 6 8 3.7150 3.3557 0.5777 7 6 4.7361 2.4363 2.4964 8 7 5.4685 3.7051 2.4965 9 6 6.3858 3.9536 3.4520 10 8 6.6052 3.1251 4.3143 11 7 7.0599 5.1207 3.4517 12 6 8.0699 5.3415 4.3844 13 6 7.9482 4.8252 5.6745 14 6 8.9304 5.0424 6.5952 15 6 10.0752 5.7812 6.2373 16 6 11.0988 6.0058 7.1831 17 1 11.6443 6.9379 7.1773 18 6 11.4064 5.0211 8.1279 19 7 10.6888 3.9285 8.1918 20 14 12.8414 5.2658 9.2985 21 1 12.3656 5.9465 10.5295 22 1 13.4199 3.9454 9.6553 23 1 13.8796 6.0997 8.6414 24 6 10.1910 6.2995 4.9325 25 6 9.1981 6.0784 4.0243 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8499 -0.9352 0.0004 29 1 1.3585 2.1317 0.0895 30 1 2.6212 1.4026 -0.9314 31 1 3.0450 0.5746 1.7353 32 1 5.4408 1.6095 2.4068 33 1 4.1785 2.3390 3.4280 34 1 5.2936 4.3660 1.8083 35 1 6.8415 5.8068 2.8018 36 1 7.0717 4.2556 5.9461 37 1 8.8325 4.6461 7.5950 38 1 10.9023 3.2455 8.8467 39 1 11.0636 6.8708 4.6524 40 1 9.2856 6.4748 3.0234 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182077485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:06 Heat of formation + Delta-G solvation = -17.458132 kcal Electronic energy + Delta-G solvation = -22875.830111 eV Core-core repulsion = 19270.150625 eV Total energy + Delta-G solvation = -3605.679486 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38787 -39.52973 -37.38506 -36.29076 -34.55935 -34.08062 -33.27770 -32.78084 -29.49727 -29.23685 -28.14670 -25.87820 -24.51926 -21.57083 -21.15199 -20.97286 -20.41090 -20.00541 -18.33142 -17.29371 -17.18274 -16.58418 -16.41657 -16.12647 -15.37841 -15.10626 -14.82678 -14.46049 -14.20695 -13.89462 -13.75220 -13.29196 -13.19924 -12.91319 -12.63730 -12.44354 -12.03139 -11.69004 -11.67622 -11.39571 -11.12757 -10.88095 -10.52769 -10.44866 -10.04610 -9.96559 -9.82529 -9.57410 -9.49991 -9.08442 -8.92215 -8.70415 -7.45021 -6.80131 -6.53118 -4.26550 1.53224 2.23689 2.60969 2.78374 3.11086 3.14311 3.15833 3.21454 3.29604 3.72661 4.03783 4.23114 4.40194 4.55698 4.71072 4.79120 5.02990 5.23139 5.25353 5.25530 5.32355 5.72353 5.86989 5.99112 6.14585 6.20575 6.39947 6.49529 6.86458 6.89222 7.04328 7.11426 7.21770 7.35001 7.44810 7.71942 7.76616 7.89969 8.07976 8.16102 8.36421 8.51841 8.74380 8.98787 9.00194 9.14409 10.38071 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.037445 B = 0.002183 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.575943 B =12825.288101 C =13435.201211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.726 5.726 5 C 0.511 3.489 6 O -0.537 6.537 7 C 0.124 3.876 8 N -0.743 5.743 9 C 0.698 3.302 10 O -0.576 6.576 11 N -0.666 5.666 12 C 0.025 3.975 13 C -0.094 4.094 14 C -0.143 4.143 15 C 0.098 3.902 16 C -0.464 4.464 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.809 5.809 20 Si 0.914 3.086 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.264 1.264 24 C -0.202 4.202 25 C -0.116 4.116 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.406 0.594 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.404 0.596 35 H 0.393 0.607 36 H 0.109 0.891 37 H 0.130 0.870 38 H 0.277 0.723 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.476 -6.875 -12.957 22.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.379 5.379 5 C 0.298 3.702 6 O -0.414 6.414 7 C -0.005 4.005 8 N -0.404 5.404 9 C 0.398 3.602 10 O -0.452 6.452 11 N -0.311 5.311 12 C -0.068 4.068 13 C -0.114 4.114 14 C -0.163 4.163 15 C 0.095 3.905 16 C -0.495 4.495 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.437 5.437 20 Si 0.740 3.260 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.223 4.223 25 C -0.137 4.137 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.135 0.865 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.241 0.759 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.240 0.760 35 H 0.226 0.774 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.332 -7.185 -12.594 21.840 hybrid contribution 0.461 0.067 -0.004 0.466 sum -15.871 -7.118 -12.598 21.477 Atomic orbital electron populations 1.24008 0.95787 1.02537 0.97821 1.23002 0.96266 0.98085 1.02335 1.20431 0.91763 0.95735 0.89714 1.45872 1.40904 1.20035 1.31049 1.20720 0.80893 0.82320 0.86314 1.90702 1.68131 1.35317 1.47202 1.20767 0.94360 0.88606 0.96755 1.44742 1.43272 1.19868 1.32515 1.15898 0.79421 0.82856 0.81987 1.90937 1.68706 1.47062 1.38534 1.42056 1.37374 1.15428 1.36276 1.17099 0.90453 1.09978 0.89251 1.20671 0.99805 0.99518 0.91423 1.21298 0.92541 1.02735 0.99719 1.17728 0.91569 0.90166 0.91026 1.19455 1.16048 1.02089 1.11915 0.90722 1.25878 0.97448 0.94608 0.96695 1.69798 1.35986 1.06671 1.31198 0.86218 0.81234 0.78376 0.80222 1.19592 1.20373 1.18815 1.20671 0.98749 1.08793 0.94038 1.20062 0.93300 1.02403 0.97888 0.87767 0.88119 0.86505 0.90892 0.90457 0.75924 0.88447 0.88484 0.75975 0.77408 0.87305 0.85233 0.91175 0.88559 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 14.32 29.02 0.42 -0.28 16 2 C -0.18 -0.84 9.63 -36.02 -0.35 -1.19 16 3 C 0.15 0.97 6.11 -5.19 -0.03 0.94 16 4 N -0.73 -5.14 5.55 -61.47 -0.34 -5.49 16 5 C 0.51 5.25 7.90 -10.99 -0.09 5.17 16 6 O -0.54 -7.24 15.67 5.56 0.09 -7.15 16 7 C 0.12 1.37 6.15 -5.20 -0.03 1.34 16 8 N -0.74 -10.34 5.53 -66.42 -0.37 -10.71 16 9 C 0.70 12.90 8.39 -86.92 -0.73 12.17 16 10 O -0.58 -12.96 13.76 5.29 0.07 -12.89 16 11 N -0.67 -12.23 5.31 -14.10 -0.07 -12.31 16 12 C 0.02 0.56 6.31 -83.57 -0.53 0.04 16 13 C -0.09 -2.39 8.61 -39.79 -0.34 -2.73 16 14 C -0.14 -3.90 8.61 -39.26 -0.34 -4.24 16 15 C 0.10 2.66 5.55 -106.79 -0.59 2.07 16 16 C -0.46 -12.58 9.02 -37.85 -0.34 -12.92 16 17 H 0.07 1.93 7.85 -52.49 -0.41 1.51 16 18 C 0.07 1.79 5.42 -17.34 -0.09 1.69 16 19 N -0.81 -21.90 10.61 55.54 0.59 -21.32 16 20 Si 0.91 19.40 29.56 -169.99 -5.03 14.38 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.20 -4.98 9.74 -39.26 -0.38 -5.36 16 25 C -0.12 -2.59 9.90 -39.79 -0.39 -2.99 16 26 H 0.10 0.33 8.06 -52.48 -0.42 -0.10 16 27 H 0.10 0.41 7.84 -52.49 -0.41 0.00 16 28 H 0.12 0.44 8.06 -52.49 -0.42 0.01 16 29 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.41 1.88 8.46 -40.82 -0.35 1.53 16 32 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.40 5.11 7.45 -40.82 -0.30 4.80 16 35 H 0.39 5.73 8.83 -40.82 -0.36 5.37 16 36 H 0.11 2.78 6.22 -52.49 -0.33 2.46 16 37 H 0.13 3.69 6.15 -52.49 -0.32 3.36 16 38 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 39 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 40 H 0.09 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -33.62 348.53 -8.61 -42.23 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.98 Total: 14.29 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.82 Total: -6.29 kcal Atomic # 7 Polarization: -49.62 SS G_CDS: -0.19 Total: -49.81 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: 0.16 Total: -20.04 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.62 -8.61 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182077485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.771 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds