Wall clock time and date at job start Tue Mar 31 2020 08:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99711 * 2 1 4 4 C 1.50701 * 109.46677 * 179.97438 * 3 2 1 5 5 N 1.29953 * 126.28791 * 89.97715 * 4 3 2 6 6 O 1.21294 * 110.24878 * 180.02562 * 5 4 3 7 7 C 1.33640 * 109.81439 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.55283 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47116 * 165.02692 * 8 7 6 10 10 C 1.52995 * 109.47680 * 285.03346 * 8 7 6 11 11 N 1.46505 * 109.46987 * 45.03313 * 8 7 6 12 12 C 1.38853 * 120.00646 * 154.99717 * 11 8 7 13 13 C 1.39559 * 119.84677 * 179.97438 * 12 11 8 14 14 C 1.36339 * 120.16380 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.83328 * 359.97438 * 14 13 12 16 16 C 1.41142 * 120.15050 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00179 * 335.18844 * 16 15 14 18 18 C 1.39862 * 119.99548 * 155.19715 * 16 15 14 19 19 N 1.30901 * 120.00443 * 342.28826 * 18 16 15 20 20 Si 1.86803 * 119.99968 * 162.28586 * 18 16 15 21 21 H 1.48501 * 109.47245 * 94.65287 * 20 18 16 22 22 H 1.48503 * 109.47218 * 214.65385 * 20 18 16 23 23 H 1.48504 * 109.46956 * 334.65203 * 20 18 16 24 24 C 1.40886 * 119.68848 * 0.27755 * 15 14 13 25 25 C 1.36336 * 119.83300 * 359.43811 * 24 15 14 26 26 N 1.31130 * 106.89753 * 0.22947 * 7 6 5 27 27 H 1.09006 * 109.47016 * 60.00143 * 1 2 3 28 28 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47549 * 300.00187 * 1 2 3 30 30 H 1.08994 * 109.47432 * 59.99581 * 3 2 1 31 31 H 1.09004 * 109.47140 * 299.99842 * 3 2 1 32 32 H 1.08996 * 109.47660 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.46911 * 300.00057 * 10 8 7 34 34 H 1.08999 * 109.46888 * 59.99390 * 10 8 7 35 35 H 0.97003 * 119.99738 * 334.99615 * 11 8 7 36 36 H 1.08001 * 119.92297 * 359.95231 * 13 12 11 37 37 H 1.08003 * 120.08637 * 179.97438 * 14 13 12 38 38 H 0.97003 * 120.00170 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07487 * 179.70336 * 24 15 14 40 40 H 1.08006 * 119.91691 * 180.27267 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2796 1.1251 -1.0465 6 8 5.4415 1.0327 -0.7109 7 6 5.5288 1.0267 0.6226 8 6 6.7915 0.9261 1.4390 9 1 6.5811 1.2101 2.4701 10 6 7.3096 -0.5130 1.4019 11 7 7.8058 1.8247 0.8823 12 6 8.8229 2.3110 1.6930 13 6 9.7877 3.1664 1.1591 14 6 10.7888 3.6481 1.9493 15 6 10.8475 3.2806 3.3082 16 6 11.8807 3.7757 4.1325 17 1 12.8188 4.0848 3.6957 18 6 11.6897 3.8659 5.5151 19 7 10.4793 3.8308 6.0123 20 14 13.1619 4.0364 6.6523 21 1 13.4003 5.4733 6.9414 22 1 12.8932 3.3140 7.9216 23 1 14.3625 3.4572 5.9978 24 6 9.8732 2.4124 3.8390 25 6 8.8745 1.9431 3.0383 26 7 4.3052 1.1195 1.0850 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 8.2226 -0.5859 1.9928 33 1 6.5549 -1.1817 1.8161 34 1 7.5199 -0.7969 0.3708 35 1 7.7669 2.0801 -0.0527 36 1 9.7414 3.4473 0.1173 37 1 11.5351 4.3097 1.5348 38 1 10.3468 3.8937 6.9712 39 1 9.9150 2.1228 4.8786 40 1 8.1243 1.2810 3.4449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183011018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:30 Heat of formation + Delta-G solvation = 54.028250 kcal Electronic energy + Delta-G solvation = -23471.946103 eV Core-core repulsion = 19869.366499 eV Total energy + Delta-G solvation = -3602.579604 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.74028 -38.42706 -38.33149 -36.29384 -35.72621 -33.63040 -32.31549 -30.40606 -29.51678 -28.90449 -28.13219 -26.30863 -25.15519 -24.02254 -23.39163 -21.62716 -20.93159 -19.82492 -18.29675 -17.72278 -17.26965 -16.79822 -16.73381 -16.11768 -15.85196 -15.26579 -15.02772 -14.45581 -13.85262 -13.69828 -13.23836 -13.01037 -12.87925 -12.61304 -12.53066 -12.21105 -12.15486 -12.03849 -11.76679 -11.59031 -11.57222 -11.27194 -11.10322 -11.04811 -10.87845 -10.54241 -10.22337 -10.13957 -9.76696 -9.35954 -9.33247 -8.70166 -7.56215 -6.70911 -6.51967 -4.10343 0.96885 1.90617 2.65165 2.86762 3.04465 3.07585 3.13046 3.17578 3.29674 3.58230 3.95398 4.02033 4.18460 4.60405 4.70092 4.73401 4.92833 4.93468 5.10574 5.18560 5.25345 5.26074 5.49118 5.69970 5.76854 5.80025 5.89648 6.17403 6.23626 6.28975 6.57050 6.76761 6.86464 7.13286 7.29222 7.43358 7.61810 7.74109 7.98867 8.08997 8.17130 8.37434 8.52542 8.71174 9.00466 9.07652 10.31780 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002568 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.089395 B =10902.103271 C =11348.822511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.158 3.842 4 C 0.165 3.835 5 N -0.369 5.369 6 O 0.086 5.914 7 C 0.194 3.806 8 C 0.256 3.744 9 H 0.119 0.881 10 C -0.168 4.168 11 N -0.753 5.753 12 C 0.083 3.917 13 C -0.148 4.148 14 C -0.189 4.189 15 C 0.079 3.921 16 C -0.465 4.465 17 H 0.073 0.927 18 C 0.075 3.925 19 N -0.804 5.804 20 Si 0.903 3.097 21 H -0.273 1.273 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.126 4.126 25 C -0.160 4.160 26 N -0.467 5.467 27 H 0.045 0.955 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.390 0.610 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.277 0.723 39 H 0.119 0.881 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.255 -6.319 -8.113 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.303 6.303 3 C 0.080 3.920 4 C -0.108 4.108 5 N -0.076 5.076 6 O 0.025 5.975 7 C -0.028 4.028 8 C 0.147 3.853 9 H 0.137 0.863 10 C -0.227 4.227 11 N -0.391 5.391 12 C -0.012 4.012 13 C -0.170 4.170 14 C -0.209 4.209 15 C 0.076 3.924 16 C -0.496 4.496 17 H 0.092 0.908 18 C -0.141 4.141 19 N -0.431 5.431 20 Si 0.727 3.273 21 H -0.198 1.198 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.146 4.146 25 C -0.182 4.182 26 N -0.201 5.201 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -15.016 -6.502 -8.235 18.319 hybrid contribution 0.413 0.489 0.277 0.698 sum -14.603 -6.013 -7.959 17.685 Atomic orbital electron populations 1.22815 0.79648 1.03420 1.00465 1.87939 1.20599 1.26199 1.95561 1.20376 0.82546 0.86122 1.02971 1.25322 0.99098 1.02447 0.83925 1.74618 0.89735 1.19357 1.23892 1.85286 1.22303 1.64752 1.25139 1.29376 0.97219 0.94418 0.81760 1.19182 0.78655 0.92560 0.94950 0.86317 1.22377 1.02786 0.94070 1.03500 1.43795 1.28812 1.55043 1.11411 1.17200 0.91517 1.01943 0.90541 1.19798 0.97283 1.02021 0.97876 1.20554 1.00165 1.04771 0.95391 1.17533 0.92944 0.90727 0.91168 1.19389 1.00571 1.38470 0.91142 0.90843 1.25814 0.96364 0.92810 0.99107 1.69847 1.21716 1.37316 1.14242 0.86400 0.82482 0.78886 0.79487 1.19835 1.20232 1.18619 1.20925 0.95962 0.98224 0.99470 1.20113 1.00972 1.04970 0.92121 1.71878 0.99672 1.19483 1.29043 0.93612 0.89024 0.93386 0.89614 0.90241 0.89416 0.91811 0.91792 0.77616 0.89378 0.88899 0.91210 0.86287 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.34 10.69 -35.23 -0.38 -4.71 16 3 C 0.16 1.67 6.56 36.01 0.24 1.90 16 4 C 0.17 2.34 7.85 -156.37 -1.23 1.11 16 5 N -0.37 -5.47 12.16 30.90 0.38 -5.09 16 6 O 0.09 1.25 11.13 18.11 0.20 1.45 16 7 C 0.19 2.81 7.26 -13.06 -0.09 2.72 16 8 C 0.26 3.67 2.80 -69.08 -0.19 3.48 16 9 H 0.12 1.81 6.44 -51.93 -0.33 1.47 16 10 C -0.17 -2.09 9.39 37.16 0.35 -1.74 16 11 N -0.75 -12.20 5.21 -53.16 -0.28 -12.47 16 12 C 0.08 1.68 6.65 -83.69 -0.56 1.13 16 13 C -0.15 -3.14 9.82 -39.77 -0.39 -3.54 16 14 C -0.19 -4.48 9.74 -39.26 -0.38 -4.86 16 15 C 0.08 2.06 5.57 -106.79 -0.59 1.46 16 16 C -0.46 -12.24 9.03 -37.87 -0.34 -12.59 16 17 H 0.07 1.87 7.90 -52.49 -0.41 1.46 16 18 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 19 N -0.80 -20.77 10.98 55.54 0.61 -20.16 16 20 Si 0.90 18.75 29.59 -169.99 -5.03 13.72 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 24 C -0.13 -3.14 8.63 -39.27 -0.34 -3.47 16 25 C -0.16 -3.47 8.75 -39.77 -0.35 -3.82 16 26 N -0.47 -7.13 11.55 -9.87 -0.11 -7.24 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.17 7.67 -51.93 -0.40 0.77 16 33 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.39 5.79 8.45 -40.82 -0.34 5.45 16 36 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 38 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 39 H 0.12 3.09 6.19 -52.49 -0.32 2.76 16 40 H 0.09 1.74 6.05 -52.48 -0.32 1.43 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -29.13 344.92 -7.35 -36.48 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.07 Total: 7.93 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.86 Total: -15.09 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.59 Total: -44.97 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.17 Total: -3.26 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.13 -7.35 -36.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183011018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.506 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds