Wall clock time and date at job start Tue Mar 31 2020 08:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99711 * 2 1 4 4 C 1.50701 * 109.46677 * 179.97438 * 3 2 1 5 5 N 1.29953 * 126.28791 * 89.97715 * 4 3 2 6 6 O 1.21294 * 110.24878 * 180.02562 * 5 4 3 7 7 C 1.33640 * 109.81439 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.55283 * 179.97438 * 7 6 5 9 9 H 1.09002 * 109.47116 * 165.02692 * 8 7 6 10 10 C 1.52995 * 109.47680 * 285.03346 * 8 7 6 11 11 N 1.46505 * 109.46987 * 45.03313 * 8 7 6 12 12 C 1.38853 * 120.00646 * 154.99717 * 11 8 7 13 13 C 1.39559 * 119.84677 * 179.97438 * 12 11 8 14 14 C 1.36339 * 120.16380 * 179.97438 * 13 12 11 15 15 C 1.40895 * 119.83328 * 359.97438 * 14 13 12 16 16 C 1.41142 * 120.15050 * 180.02562 * 15 14 13 17 17 H 1.07993 * 120.00179 * 335.18844 * 16 15 14 18 18 C 1.39862 * 119.99548 * 155.19715 * 16 15 14 19 19 N 1.30901 * 120.00443 * 342.28826 * 18 16 15 20 20 Si 1.86803 * 119.99968 * 162.28586 * 18 16 15 21 21 H 1.48501 * 109.47245 * 94.65287 * 20 18 16 22 22 H 1.48503 * 109.47218 * 214.65385 * 20 18 16 23 23 H 1.48504 * 109.46956 * 334.65203 * 20 18 16 24 24 C 1.40886 * 119.68848 * 0.27755 * 15 14 13 25 25 C 1.36336 * 119.83300 * 359.43811 * 24 15 14 26 26 N 1.31130 * 106.89753 * 0.22947 * 7 6 5 27 27 H 1.09006 * 109.47016 * 60.00143 * 1 2 3 28 28 H 1.09002 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47549 * 300.00187 * 1 2 3 30 30 H 1.08994 * 109.47432 * 59.99581 * 3 2 1 31 31 H 1.09004 * 109.47140 * 299.99842 * 3 2 1 32 32 H 1.08996 * 109.47660 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.46911 * 300.00057 * 10 8 7 34 34 H 1.08999 * 109.46888 * 59.99390 * 10 8 7 35 35 H 0.97003 * 119.99738 * 334.99615 * 11 8 7 36 36 H 1.08001 * 119.92297 * 359.95231 * 13 12 11 37 37 H 1.08003 * 120.08637 * 179.97438 * 14 13 12 38 38 H 0.97003 * 120.00170 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.07487 * 179.70336 * 24 15 14 40 40 H 1.08006 * 119.91691 * 180.27267 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 7 4.2796 1.1251 -1.0465 6 8 5.4415 1.0327 -0.7109 7 6 5.5288 1.0267 0.6226 8 6 6.7915 0.9261 1.4390 9 1 6.5811 1.2101 2.4701 10 6 7.3096 -0.5130 1.4019 11 7 7.8058 1.8247 0.8823 12 6 8.8229 2.3110 1.6930 13 6 9.7877 3.1664 1.1591 14 6 10.7888 3.6481 1.9493 15 6 10.8475 3.2806 3.3082 16 6 11.8807 3.7757 4.1325 17 1 12.8188 4.0848 3.6957 18 6 11.6897 3.8659 5.5151 19 7 10.4793 3.8308 6.0123 20 14 13.1619 4.0364 6.6523 21 1 13.4003 5.4733 6.9414 22 1 12.8932 3.3140 7.9216 23 1 14.3625 3.4572 5.9978 24 6 9.8732 2.4124 3.8390 25 6 8.8745 1.9431 3.0383 26 7 4.3052 1.1195 1.0850 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.6885 1.8464 0.8899 31 1 1.6886 1.8464 -0.8900 32 1 8.2226 -0.5859 1.9928 33 1 6.5549 -1.1817 1.8161 34 1 7.5199 -0.7969 0.3708 35 1 7.7669 2.0801 -0.0527 36 1 9.7414 3.4473 0.1173 37 1 11.5351 4.3097 1.5348 38 1 10.3468 3.8937 6.9712 39 1 9.9150 2.1228 4.8786 40 1 8.1243 1.2810 3.4449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183011018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:57:29 Heat of formation + Delta-G solvation = 34.645748 kcal Electronic energy + Delta-G solvation = -23472.786591 eV Core-core repulsion = 19869.366499 eV Total energy + Delta-G solvation = -3603.420092 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.85492 -39.97471 -39.15440 -37.72403 -36.88671 -35.30848 -33.66915 -31.79637 -31.27865 -29.76241 -29.70335 -26.95172 -26.61321 -25.46462 -24.50738 -23.18251 -22.49819 -21.29767 -19.40187 -19.13458 -18.88108 -18.19542 -17.46014 -17.08273 -16.82164 -16.65131 -16.45073 -15.87904 -15.45848 -14.97257 -14.50723 -14.34718 -14.07719 -13.88281 -13.66645 -13.62237 -13.37310 -13.25369 -13.15432 -13.01038 -12.71199 -12.57314 -12.55040 -12.35900 -12.27109 -12.22666 -11.57249 -11.28464 -11.13653 -11.06660 -10.88468 -10.41669 -9.36568 -8.53881 -8.23476 -6.00419 -0.14649 0.83668 1.12091 1.22138 1.42994 1.50800 1.55390 1.62061 2.09174 2.29471 2.52182 2.86542 2.95902 3.14879 3.62251 3.86306 3.96161 4.05909 4.12435 4.26844 4.44584 4.46332 4.51736 4.52978 4.53466 4.66446 4.74276 4.82492 4.83546 5.07328 5.12922 5.25230 5.29198 5.47119 5.67177 5.81338 5.93651 5.96769 6.21731 6.38562 6.61972 6.82382 6.88695 7.04962 7.11279 7.25194 8.49607 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.029809 B = 0.002568 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.089395 B =10902.103271 C =11348.822511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.156 3.844 4 C 0.161 3.839 5 N -0.381 5.381 6 O 0.086 5.914 7 C 0.196 3.804 8 C 0.258 3.742 9 H 0.113 0.887 10 C -0.161 4.161 11 N -0.744 5.744 12 C 0.111 3.889 13 C -0.155 4.155 14 C -0.198 4.198 15 C 0.039 3.961 16 C -0.503 4.503 17 H 0.067 0.933 18 C 0.033 3.967 19 N -0.838 5.838 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.269 1.269 23 H -0.261 1.261 24 C -0.144 4.144 25 C -0.166 4.166 26 N -0.483 5.483 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.401 0.599 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.282 0.718 39 H 0.100 0.900 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 -6.919 -9.029 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.078 3.922 4 C -0.112 4.112 5 N -0.089 5.089 6 O 0.026 5.974 7 C -0.026 4.026 8 C 0.149 3.851 9 H 0.131 0.869 10 C -0.221 4.221 11 N -0.381 5.381 12 C 0.013 3.987 13 C -0.177 4.177 14 C -0.218 4.218 15 C 0.037 3.963 16 C -0.535 4.535 17 H 0.085 0.915 18 C -0.179 4.179 19 N -0.466 5.466 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.193 1.193 23 H -0.185 1.185 24 C -0.164 4.164 25 C -0.187 4.187 26 N -0.217 5.217 27 H 0.079 0.921 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.119 0.881 31 H 0.118 0.882 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.236 0.764 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.441 -7.117 -9.191 20.136 hybrid contribution 0.638 0.609 0.381 0.961 sum -15.803 -6.509 -8.809 19.228 Atomic orbital electron populations 1.23051 0.77450 1.04554 1.01849 1.87886 1.23006 1.26580 1.95842 1.20610 0.80478 0.86395 1.04719 1.26007 1.00638 1.01266 0.83264 1.74610 0.89879 1.20110 1.24313 1.85271 1.22383 1.64838 1.24920 1.29243 0.97058 0.94415 0.81881 1.19235 0.78198 0.93201 0.94428 0.86943 1.22315 1.02791 0.92799 1.04189 1.43745 1.28051 1.54748 1.11532 1.17218 0.91364 0.99834 0.90248 1.20084 0.96651 1.01834 0.99163 1.20740 1.01048 1.04972 0.95011 1.17858 0.93969 0.92092 0.92427 1.19598 1.00828 1.40559 0.92466 0.91457 1.26576 0.99063 0.92177 1.00110 1.69905 1.23446 1.38516 1.14775 0.85332 0.78754 0.78981 0.77421 1.19245 1.19318 1.18542 1.20863 0.97237 0.99180 0.99151 1.20289 1.00669 1.05150 0.92614 1.71892 1.00105 1.19958 1.29789 0.92061 0.88103 0.92148 0.88134 0.88193 0.90137 0.90211 0.90805 0.76385 0.86357 0.88567 0.90728 0.88182 0.86821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -8.54 10.69 -148.98 -1.59 -10.13 16 3 C 0.16 2.95 6.56 71.24 0.47 3.42 16 4 C 0.16 4.28 7.85 138.46 1.09 5.37 16 5 N -0.38 -10.62 12.16 -60.33 -0.73 -11.35 16 6 O 0.09 2.31 11.13 74.87 0.83 3.15 16 7 C 0.20 5.29 7.26 88.38 0.64 5.93 16 8 C 0.26 6.85 2.80 44.24 0.12 6.98 16 9 H 0.11 3.21 6.44 -2.39 -0.02 3.20 16 10 C -0.16 -3.65 9.39 71.98 0.68 -2.97 16 11 N -0.74 -22.32 5.21 -322.09 -1.68 -23.99 16 12 C 0.11 4.31 6.65 38.67 0.26 4.57 16 13 C -0.16 -6.39 9.82 22.15 0.22 -6.18 16 14 C -0.20 -9.47 9.74 22.48 0.22 -9.25 16 15 C 0.04 2.11 5.57 -21.27 -0.12 1.99 16 16 C -0.50 -27.55 9.03 23.38 0.21 -27.34 16 17 H 0.07 3.59 7.90 -2.91 -0.02 3.56 16 18 C 0.03 1.70 5.13 85.22 0.44 2.14 16 19 N -0.84 -44.66 10.98 21.81 0.24 -44.42 16 20 Si 0.97 39.32 29.59 68.60 2.03 41.35 16 21 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 24 C -0.14 -7.37 8.63 22.47 0.19 -7.18 16 25 C -0.17 -7.10 8.75 22.15 0.19 -6.90 16 26 N -0.48 -13.91 11.55 -303.21 -3.50 -17.41 16 27 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.10 1.43 8.14 -2.38 -0.02 1.42 16 32 H 0.08 1.98 7.67 -2.39 -0.02 1.96 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.40 10.74 8.45 -92.71 -0.78 9.95 16 36 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.10 4.40 8.06 -2.91 -0.02 4.38 16 38 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 39 H 0.10 5.42 6.19 -2.91 -0.02 5.41 16 40 H 0.11 4.25 6.05 -2.91 -0.02 4.24 16 Total: -1.00 -63.94 344.92 1.75 -62.20 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: 0.29 Total: 28.50 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: 5.85 Total: -27.89 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -5.67 Total: -97.18 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.76 Total: -6.98 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 2.03 Total: 41.35 kcal Total: -63.94 1.75 -62.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183011018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.843 kcal (2) G-P(sol) polarization free energy of solvation -63.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds