Wall clock time and date at job start Tue Mar 31 2020 08:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46936 * 2 1 4 4 H 1.08998 * 109.47407 * 305.26357 * 3 2 1 5 5 C 1.50705 * 109.46956 * 185.26199 * 3 2 1 6 6 H 1.08001 * 119.99548 * 245.25258 * 5 3 2 7 7 C 1.37871 * 120.00123 * 64.97561 * 5 3 2 8 8 N 1.31516 * 119.99744 * 6.91527 * 7 5 3 9 9 Si 1.86796 * 120.00157 * 186.91577 * 7 5 3 10 10 H 1.48502 * 109.47168 * 93.76883 * 9 7 5 11 11 H 1.48497 * 109.47321 * 213.77204 * 9 7 5 12 12 H 1.48500 * 109.47119 * 333.77232 * 9 7 5 13 13 N 1.46500 * 109.46902 * 65.26579 * 3 2 1 14 14 C 1.34780 * 119.99749 * 274.99542 * 13 3 2 15 15 O 1.21630 * 119.99929 * 0.02562 * 14 13 3 16 16 C 1.47205 * 120.00072 * 180.02562 * 14 13 3 17 17 C 1.38123 * 126.74481 * 179.71263 * 16 14 13 18 18 C 1.40894 * 105.28724 * 179.97438 * 17 16 14 19 19 C 1.47904 * 126.24258 * 180.12844 * 18 17 16 20 20 C 1.35884 * 125.92883 * 180.02562 * 19 18 17 21 21 C 1.40979 * 106.74661 * 179.88544 * 20 19 18 22 22 C 1.34695 * 107.02682 * 0.37150 * 21 20 19 23 23 C 1.50698 * 125.67494 * 179.74943 * 22 21 20 24 24 O 1.34348 * 108.65840 * 359.76739 * 22 21 20 25 25 N 1.31808 * 107.51216 * 0.34470 * 18 17 16 26 26 N 1.28413 * 110.76297 * 359.78240 * 25 18 17 27 27 H 0.97007 * 125.03037 * 179.97438 * 26 25 18 28 28 H 1.08997 * 109.47467 * 300.00150 * 1 2 3 29 29 H 1.09004 * 109.46911 * 60.00041 * 1 2 3 30 30 H 1.08996 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47197 * 240.00523 * 2 1 3 32 32 H 1.08990 * 109.47000 * 119.99945 * 2 1 3 33 33 H 0.97003 * 119.99827 * 179.97438 * 8 7 5 34 34 H 0.96997 * 120.00739 * 94.99703 * 13 3 2 35 35 H 1.07997 * 127.36365 * 359.97438 * 17 16 14 36 36 H 1.08006 * 126.62246 * 0.02562 * 20 19 18 37 37 H 1.08001 * 126.48850 * 180.12031 * 21 20 19 38 38 H 1.09002 * 109.47248 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.46679 * 300.00140 * 23 22 21 40 40 H 1.09002 * 109.46956 * 59.99471 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6017 1.9829 -0.8391 5 6 3.5413 1.4445 -0.1303 6 1 4.1532 1.8107 0.6808 7 6 4.1339 0.9737 -1.2827 8 7 3.3915 0.6504 -2.3190 9 14 5.9912 0.7949 -1.3721 10 1 6.3735 -0.5912 -1.0007 11 1 6.4501 1.0813 -2.7550 12 1 6.6265 1.7525 -0.4315 13 7 1.6578 2.0955 1.2545 14 6 0.4410 2.6623 1.3758 15 8 -0.3400 2.6312 0.4438 16 6 0.0572 3.3189 2.6361 17 6 -1.1434 3.9446 2.9096 18 6 -1.0268 4.4093 4.2346 19 6 -2.0574 5.1481 4.9960 20 6 -1.9378 5.5938 6.2741 21 6 -3.1488 6.2413 6.5934 22 6 -3.9418 6.1520 5.5084 23 6 -5.3402 6.7019 5.3942 24 8 -3.2790 5.4907 4.5448 25 7 0.1699 4.0696 4.6701 26 7 0.8214 3.4355 3.7632 27 1 1.7225 3.0906 3.8632 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 3.8085 0.3195 -3.1300 34 1 2.2804 2.1201 1.9979 35 1 -1.9907 4.0544 2.2490 36 1 -1.0799 5.4768 6.9197 37 1 -3.3955 6.7152 7.5320 38 1 -5.7378 6.4810 4.4037 39 1 -5.9748 6.2409 6.1512 40 1 -5.3197 7.7811 5.5456 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183820059.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:16 Heat of formation + Delta-G solvation = 41.343927 kcal Electronic energy + Delta-G solvation = -23701.348303 eV Core-core repulsion = 20098.218666 eV Total energy + Delta-G solvation = -3603.129637 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.80704 -42.30186 -38.94694 -35.24054 -33.37326 -33.30890 -32.47997 -31.42184 -31.14185 -30.29642 -27.18770 -26.67648 -23.88881 -22.90649 -22.12196 -21.64896 -20.54896 -20.08598 -19.59435 -18.85539 -16.76826 -16.48968 -16.43905 -15.66269 -15.47871 -15.31085 -14.67538 -14.40410 -14.37306 -13.62387 -13.45446 -13.37271 -13.27480 -12.96242 -12.82360 -12.69598 -12.22252 -12.04466 -11.60745 -11.43528 -11.14191 -10.97554 -10.88216 -10.45525 -10.34840 -10.31587 -9.82761 -9.79479 -9.41466 -9.21220 -9.11264 -8.60809 -8.08276 -8.03253 -6.23893 -4.31584 1.11194 1.45144 2.25386 2.30434 2.98278 3.05640 3.18408 3.26007 3.27234 3.67289 3.70850 4.26127 4.34140 4.70158 4.79915 4.89883 5.01956 5.09690 5.14252 5.17816 5.41051 5.50016 5.56493 5.75719 5.86221 6.00531 6.26795 6.30493 6.31142 6.39246 6.50293 6.73890 6.89880 7.03484 7.06833 7.14063 7.24229 7.46298 7.57845 7.70191 7.80737 7.95177 8.40893 8.62288 8.84181 9.34787 10.83924 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.031133 B = 0.002745 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.144802 B =10197.620675 C =10728.277697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.269 3.731 4 H 0.060 0.940 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.701 5.701 14 C 0.573 3.427 15 O -0.521 6.521 16 C -0.013 4.013 17 C -0.145 4.145 18 C 0.089 3.911 19 C 0.071 3.929 20 C -0.175 4.175 21 C -0.212 4.212 22 C -0.009 4.009 23 C -0.073 4.073 24 O -0.164 6.164 25 N -0.250 5.250 26 N -0.368 5.368 27 H 0.450 0.550 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.035 0.965 33 H 0.266 0.734 34 H 0.383 0.617 35 H 0.169 0.831 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.848 8.301 15.812 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.168 3.832 4 H 0.078 0.922 5 C -0.579 4.579 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.355 3.645 15 O -0.397 6.397 16 C -0.142 4.142 17 C -0.173 4.173 18 C -0.067 4.067 19 C 0.019 3.981 20 C -0.196 4.196 21 C -0.231 4.231 22 C -0.060 4.060 23 C -0.130 4.130 24 O -0.060 6.060 25 N -0.086 5.086 26 N -0.086 5.086 27 H 0.296 0.704 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.215 0.785 35 H 0.186 0.814 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.811 8.163 15.456 20.552 hybrid contribution 1.473 -0.385 -0.156 1.530 sum -9.338 7.778 15.300 19.539 Atomic orbital electron populations 1.21864 0.97959 0.98472 1.01507 1.21873 0.93016 0.99574 1.01571 1.18920 0.94728 0.89122 0.80427 0.92212 1.21143 0.90298 1.44258 1.02169 0.92059 1.24881 0.98624 0.94900 0.95036 1.69963 1.35501 1.42727 1.03263 0.86464 0.84752 0.78502 0.77566 1.20476 1.21026 1.19843 1.46478 1.13724 1.55705 1.18910 1.16948 0.83410 0.79314 0.84788 1.90836 1.51118 1.59367 1.38355 1.22262 0.94010 1.07245 0.90649 1.22143 0.98262 1.01300 0.95604 1.18626 0.91299 1.03994 0.92796 1.18566 0.83969 1.03028 0.92502 1.21749 0.99894 1.02724 0.95227 1.21488 0.94596 1.06882 1.00146 1.22517 0.96313 0.99625 0.87558 1.20324 0.87597 1.00878 1.04189 1.83994 1.23852 1.58126 1.40016 1.73248 1.05801 1.12594 1.17005 1.43627 1.15765 1.40872 1.08318 0.70355 0.94141 0.92810 0.95518 0.89629 0.94668 0.92407 0.78505 0.81396 0.82910 0.83224 0.90404 0.89607 0.89592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.52 37.16 0.32 -2.68 16 2 C -0.12 -2.78 5.49 -26.73 -0.15 -2.92 16 3 C 0.27 6.39 2.11 -69.08 -0.15 6.24 16 4 H 0.06 1.67 7.55 -51.93 -0.39 1.27 16 5 C -0.54 -13.55 8.67 -34.44 -0.30 -13.85 16 6 H 0.06 1.46 7.73 -52.49 -0.41 1.05 16 7 C 0.07 1.81 5.20 -17.82 -0.09 1.72 16 8 N -0.88 -23.98 12.00 55.43 0.67 -23.31 16 9 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 13 N -0.70 -13.44 5.02 -56.08 -0.28 -13.72 16 14 C 0.57 10.98 6.39 -12.62 -0.08 10.90 16 15 O -0.52 -11.74 14.04 5.25 0.07 -11.67 16 16 C -0.01 -0.21 7.14 -82.11 -0.59 -0.80 16 17 C -0.14 -2.28 10.81 -38.62 -0.42 -2.70 16 18 C 0.09 1.32 7.10 -82.91 -0.59 0.73 16 19 C 0.07 0.98 7.19 -36.47 -0.26 0.72 16 20 C -0.17 -2.10 10.82 -39.39 -0.43 -2.53 16 21 C -0.21 -2.15 10.78 -39.80 -0.43 -2.58 16 22 C -0.01 -0.09 7.32 -35.56 -0.26 -0.35 16 23 C -0.07 -0.45 10.41 36.00 0.37 -0.08 16 24 O -0.16 -2.19 10.67 4.58 0.05 -2.14 16 25 N -0.25 -3.55 12.16 33.34 0.41 -3.14 16 26 N -0.37 -4.85 6.83 33.45 0.23 -4.62 16 27 H 0.45 4.47 8.20 -190.47 -1.56 2.91 16 28 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 29 H 0.05 1.22 7.86 -51.93 -0.41 0.81 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 2.17 6.65 -51.93 -0.35 1.82 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.38 6.08 7.69 -40.82 -0.31 5.77 16 35 H 0.17 2.55 8.06 -52.49 -0.42 2.12 16 36 H 0.15 1.65 8.06 -52.48 -0.42 1.22 16 37 H 0.15 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 344.05 15.07 5.18 5.18 Total: -1.00 -30.79 344.05 -7.98 -38.76 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -6.24 Total: 7.92 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -3.04 Total: -8.17 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: 1.02 Total: -44.80 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.12 Total: -13.81 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.79 -7.98 -38.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183820059.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.106 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds