Wall clock time and date at job start Tue Mar 31 2020 08:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47546 * 2 1 4 4 H 1.09003 * 109.46877 * 305.00272 * 3 2 1 5 5 C 1.50700 * 109.47320 * 185.00380 * 3 2 1 6 6 H 1.07998 * 119.99435 * 240.00017 * 5 3 2 7 7 C 1.37878 * 119.99957 * 59.99684 * 5 3 2 8 8 N 1.31512 * 120.00153 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99773 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47196 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47708 * 119.99956 * 9 7 5 12 12 H 1.48505 * 109.47272 * 240.00384 * 9 7 5 13 13 N 1.46500 * 109.47059 * 64.99797 * 3 2 1 14 14 C 1.34774 * 120.00443 * 274.99976 * 13 3 2 15 15 O 1.21529 * 119.99576 * 0.02562 * 14 13 3 16 16 C 1.48001 * 120.00306 * 179.72458 * 14 13 3 17 17 C 1.39476 * 121.10058 * 324.75348 * 16 14 13 18 18 C 1.38559 * 119.19690 * 179.71277 * 17 16 14 19 19 C 1.50701 * 119.16640 * 180.26165 * 18 17 16 20 20 N 1.31586 * 121.66025 * 0.61108 * 18 17 16 21 21 C 1.32417 * 122.02810 * 359.67845 * 20 18 17 22 22 O 1.34838 * 133.10533 * 180.02562 * 21 20 18 23 23 N 1.41325 * 109.42488 * 179.97438 * 22 21 20 24 24 C 1.29817 * 109.73186 * 359.97438 * 23 22 21 25 25 C 1.50705 * 126.33306 * 179.97438 * 24 23 22 26 26 C 1.40559 * 120.03769 * 359.97438 * 21 20 18 27 27 H 1.08996 * 109.47654 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46937 * 300.00372 * 1 2 3 29 29 H 1.09001 * 109.46898 * 59.99619 * 1 2 3 30 30 H 1.08998 * 109.46684 * 239.99660 * 2 1 3 31 31 H 1.09001 * 109.46898 * 120.00380 * 2 1 3 32 32 H 0.96995 * 120.00038 * 180.02562 * 8 7 5 33 33 H 0.96999 * 119.99764 * 95.00486 * 13 3 2 34 34 H 1.07992 * 120.40160 * 0.02562 * 17 16 14 35 35 H 1.08997 * 109.47141 * 270.34183 * 19 18 17 36 36 H 1.09002 * 109.47619 * 30.34203 * 19 18 17 37 37 H 1.09007 * 109.47218 * 150.34294 * 19 18 17 38 38 H 1.09007 * 109.46478 * 264.25644 * 25 24 23 39 39 H 1.08994 * 109.47086 * 24.25228 * 25 24 23 40 40 H 1.08996 * 109.47379 * 144.25791 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4441 -0.1239 6 1 4.1473 1.8887 0.6522 7 6 4.1433 0.8782 -1.2281 8 7 3.4062 0.3373 -2.1734 9 14 6.0049 0.8797 -1.3813 10 1 6.5988 1.5450 -0.1938 11 1 6.4962 -0.5192 -1.4628 12 1 6.4000 1.6154 -2.6093 13 7 1.6526 2.0974 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3410 2.6319 0.4325 16 6 0.0415 3.3208 2.6337 17 6 0.4608 2.8192 3.8657 18 6 0.0737 3.4685 5.0270 19 6 0.5320 2.9293 6.3575 20 7 -0.6895 4.5400 4.9976 21 6 -1.1247 5.0612 3.8608 22 8 -1.8983 6.1273 3.5725 23 7 -2.0518 6.2314 2.1715 24 6 -1.4025 5.2714 1.5868 25 6 -1.3142 5.0278 0.1022 26 6 -0.7733 4.4692 2.6353 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8292 -0.0612 -2.9500 33 1 2.2721 2.1231 1.9977 34 1 1.0837 1.9383 3.9138 35 1 -0.1942 2.2046 6.7255 36 1 1.5010 2.4444 6.2389 37 1 0.6208 3.7490 7.0706 38 1 -2.0660 4.2949 -0.1910 39 1 -1.4908 5.9622 -0.4304 40 1 -0.3223 4.6500 -0.1458 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183853947.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:10 Heat of formation + Delta-G solvation = 15.423052 kcal Electronic energy + Delta-G solvation = -24956.877795 eV Core-core repulsion = 21352.624144 eV Total energy + Delta-G solvation = -3604.253651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.28142 -40.98829 -39.91787 -37.08328 -35.87399 -34.53939 -33.71893 -33.15648 -32.38932 -29.86250 -29.09490 -28.50209 -25.98022 -24.90498 -23.99301 -22.53100 -21.58738 -21.03032 -19.38857 -19.09494 -18.53156 -17.78216 -17.66831 -17.19276 -16.52116 -16.00395 -15.77563 -15.27071 -15.14923 -14.82288 -14.56331 -14.53233 -14.48334 -14.07104 -13.74514 -13.72503 -13.43829 -13.14979 -13.05647 -13.00535 -12.87557 -12.70204 -12.50897 -12.17749 -12.12813 -12.04351 -11.54607 -11.33880 -11.00789 -10.73742 -10.61775 -10.49606 -10.09217 -9.67865 -8.14153 -6.30135 -0.98673 -0.33223 0.66267 0.86751 1.46110 1.49458 1.58782 1.68675 2.11201 2.39180 2.44775 2.56898 2.88407 3.16739 3.23653 3.36739 3.59060 3.81377 4.03769 4.21627 4.36297 4.54434 4.55526 4.55787 4.60092 4.62165 4.80065 4.82966 4.90545 4.95377 5.10110 5.12733 5.31594 5.35990 5.46266 5.52278 5.62779 5.80881 5.82462 5.91305 6.19671 6.42317 6.75592 6.83209 7.28180 7.45069 8.90906 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.016766 B = 0.004307 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.662263 B = 6500.008647 C = 7104.044195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.121 4.121 3 C 0.280 3.720 4 H 0.010 0.990 5 C -0.545 4.545 6 H 0.072 0.928 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.962 3.038 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.288 1.288 13 N -0.685 5.685 14 C 0.541 3.459 15 O -0.546 6.546 16 C 0.003 3.997 17 C -0.163 4.163 18 C 0.209 3.791 19 C -0.106 4.106 20 N -0.490 5.490 21 C 0.279 3.721 22 O -0.104 6.104 23 N -0.299 5.299 24 C 0.162 3.838 25 C -0.074 4.074 26 C -0.235 4.235 27 H 0.042 0.958 28 H 0.044 0.956 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.264 0.736 33 H 0.406 0.594 34 H 0.190 0.810 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 2.383 13.560 14.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.028 0.972 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.179 4.179 8 N -0.550 5.550 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.214 1.214 13 N -0.333 5.333 14 C 0.326 3.674 15 O -0.425 6.425 16 C -0.010 4.010 17 C -0.183 4.183 18 C 0.066 3.934 19 C -0.162 4.162 20 N -0.212 5.212 21 C 0.097 3.903 22 O -0.106 6.106 23 N -0.050 5.050 24 C -0.017 4.017 25 C -0.131 4.131 26 C -0.242 4.242 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.242 0.758 34 H 0.207 0.793 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.847 3.825 13.373 14.729 hybrid contribution 1.516 -0.806 -1.024 1.999 sum -3.331 3.019 12.348 13.141 Atomic orbital electron populations 1.21699 0.96917 0.99217 1.00420 1.21792 0.93709 0.98862 1.01633 1.18485 0.93666 0.89321 0.80813 0.97205 1.21564 0.91391 1.38775 1.06595 0.90996 1.25630 1.02621 0.94502 0.95165 1.70025 1.36764 1.38345 1.09848 0.85438 0.79952 0.77696 0.78090 1.18530 1.20657 1.21430 1.46213 1.14456 1.54459 1.18203 1.18185 0.83147 0.79398 0.86702 1.90769 1.51916 1.59734 1.40114 1.20170 0.93247 0.92048 0.95564 1.22589 1.02650 1.03321 0.89759 1.22176 0.86870 0.86096 0.98249 1.21102 1.03868 1.02441 0.88816 1.66467 1.14772 1.14163 1.25831 1.20511 0.91161 0.88546 0.90116 1.89161 1.60062 1.40261 1.21092 1.80042 1.21734 1.20333 0.82856 1.24890 0.88876 0.88833 0.99135 1.20622 1.05551 1.03957 0.83019 1.21338 1.07920 1.01853 0.93093 0.93872 0.93730 0.95098 0.90978 0.93644 0.92658 0.75841 0.79306 0.87364 0.86460 0.89222 0.87821 0.88278 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.97 8.51 71.98 0.61 -4.36 16 2 C -0.12 -5.28 5.45 30.59 0.17 -5.11 16 3 C 0.28 12.60 2.24 44.24 0.10 12.70 16 4 H 0.01 0.54 7.58 -2.39 -0.02 0.52 16 5 C -0.55 -26.01 8.73 25.60 0.22 -25.79 16 6 H 0.07 3.22 7.74 -2.91 -0.02 3.20 16 7 C 0.02 1.07 5.29 84.66 0.45 1.51 16 8 N -0.91 -48.51 11.29 21.45 0.24 -48.26 16 9 Si 0.96 39.37 29.54 68.60 2.03 41.40 16 10 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 11 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 13 N -0.68 -24.01 4.96 -448.84 -2.22 -26.24 16 14 C 0.54 18.60 5.68 86.83 0.49 19.10 16 15 O -0.55 -21.59 10.30 -3.81 -0.04 -21.62 16 16 C 0.00 0.07 5.84 -19.76 -0.12 -0.04 16 17 C -0.16 -3.42 9.05 22.65 0.20 -3.21 16 18 C 0.21 4.20 6.78 42.67 0.29 4.49 16 19 C -0.11 -1.05 10.14 71.24 0.72 -0.32 16 20 N -0.49 -13.42 10.25 -296.39 -3.04 -16.46 16 21 C 0.28 8.93 8.64 85.17 0.74 9.67 16 22 O -0.10 -3.58 12.06 29.76 0.36 -3.22 16 23 N -0.30 -10.00 12.81 -43.67 -0.56 -10.56 16 24 C 0.16 5.19 7.44 44.94 0.33 5.53 16 25 C -0.07 -2.12 8.65 71.24 0.62 -1.50 16 26 C -0.24 -7.53 6.12 -20.00 -0.12 -7.65 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.68 5.64 -2.38 -0.01 1.67 16 29 H 0.03 1.33 7.84 -2.39 -0.02 1.31 16 30 H 0.07 3.62 5.95 -2.39 -0.01 3.61 16 31 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 33 H 0.41 11.72 7.81 -92.71 -0.72 10.99 16 34 H 0.19 2.66 7.71 -2.91 -0.02 2.64 16 35 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.12 0.55 8.07 -2.39 -0.02 0.54 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.10 2.95 7.88 -2.38 -0.02 2.93 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.09 2.81 6.24 -2.39 -0.01 2.79 16 Total: -1.00 -63.01 332.58 1.84 -61.16 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.37 Total: 18.81 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 4.71 Total: 4.99 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -5.58 Total: -101.52 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.32 Total: -24.84 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -63.01 1.84 -61.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183853947.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.586 kcal (2) G-P(sol) polarization free energy of solvation -63.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds