Wall clock time and date at job start Tue Mar 31 2020 08:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34812 * 116.99720 * 89.99471 * 13 3 2 15 15 O 1.21576 * 120.00299 * 0.02562 * 14 13 3 16 16 C 1.46848 * 119.99454 * 180.02562 * 14 13 3 17 17 C 1.41433 * 126.50416 * 0.02835 * 16 14 13 18 18 N 1.30335 * 108.15453 * 180.02562 * 17 16 14 19 19 N 1.39898 * 109.17601 * 359.97438 * 18 17 16 20 20 C 1.46499 * 125.74646 * 179.97438 * 19 18 17 21 21 C 1.34716 * 108.50549 * 359.72750 * 19 18 17 22 22 N 1.38945 * 126.41726 * 180.29582 * 21 19 18 23 23 C 1.36742 * 125.68888 * 134.84992 * 22 21 19 24 24 C 1.34790 * 108.18305 * 179.86706 * 23 22 21 25 25 C 1.41026 * 107.50522 * 0.39227 * 24 23 22 26 26 C 1.34783 * 107.50424 * 359.75310 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 1.07996 * 125.91794 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.47319 * 90.02517 * 20 19 18 35 35 H 1.09003 * 109.47315 * 210.02501 * 20 19 18 36 36 H 1.09000 * 109.47291 * 330.02307 * 20 19 18 37 37 H 1.07989 * 125.90772 * 0.02562 * 23 22 21 38 38 H 1.07996 * 126.24264 * 180.17923 * 24 23 22 39 39 H 1.08001 * 126.24457 * 179.79330 * 25 24 23 40 40 H 1.08006 * 125.90074 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 8 1.6559 2.0917 -1.2407 14 6 0.4676 2.7281 -1.2559 15 8 -0.2283 2.7405 -0.2591 16 6 0.0138 3.4066 -2.4767 17 6 0.7078 3.4782 -3.7070 18 7 -0.0186 4.1646 -4.5436 19 7 -1.1987 4.5639 -3.9072 20 6 -2.2732 5.3536 -4.5139 21 6 -1.1832 4.0953 -2.6443 22 7 -2.1752 4.2702 -1.6873 23 6 -2.6709 3.2966 -0.8650 24 6 -3.6136 3.8511 -0.0772 25 6 -3.7125 5.2133 -0.4287 26 6 -2.8229 5.4432 -1.4147 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 1.6727 3.0408 -3.9164 34 1 -3.0001 4.6847 -4.9748 35 1 -2.7646 5.9498 -3.7450 36 1 -1.8546 6.0139 -5.2734 37 1 -2.3590 2.2628 -0.8477 38 1 -4.1904 3.3439 0.6820 39 1 -4.3790 5.9397 0.0123 40 1 -2.6516 6.3901 -1.9051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188110577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:02 Heat of formation + Delta-G solvation = 62.815870 kcal Electronic energy + Delta-G solvation = -25245.930801 eV Core-core repulsion = 21643.732257 eV Total energy + Delta-G solvation = -3602.198544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.25901 -40.58154 -39.43232 -35.93848 -34.03874 -33.47814 -32.82291 -31.90086 -29.17557 -28.91351 -27.92321 -27.31101 -23.69386 -22.67649 -22.08125 -21.48598 -20.35792 -20.05947 -19.40999 -18.41456 -17.29570 -16.57509 -16.23315 -15.89241 -15.37525 -15.32587 -14.57964 -14.40455 -14.28799 -14.01562 -13.53368 -13.25468 -13.07029 -12.99534 -12.81361 -12.48675 -12.31160 -12.14714 -11.95311 -11.76536 -11.45809 -11.23226 -11.14427 -10.74090 -10.11352 -10.02878 -9.89438 -9.59616 -9.50903 -9.21155 -9.05981 -8.64530 -8.47906 -8.23982 -6.21750 -4.23873 0.87390 1.65346 2.03068 2.27036 2.79286 2.99331 3.19324 3.32110 3.34749 3.45429 3.53021 4.20861 4.27584 4.66050 4.70522 4.74257 4.97473 5.02278 5.08048 5.11315 5.24374 5.42034 5.52643 5.68170 5.82908 5.93164 6.00440 6.13081 6.16303 6.17785 6.27972 6.47055 6.56735 6.67923 6.74159 6.80862 6.98287 7.08001 7.25888 7.31323 7.38437 7.53803 8.25506 8.62943 8.86200 9.35480 10.90277 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.004706 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.104139 B = 5947.984071 C = 6859.554680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.047 0.953 5 C -0.524 4.524 6 H 0.087 0.913 7 C 0.081 3.919 8 N -0.888 5.888 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.260 1.260 13 O -0.334 6.334 14 C 0.530 3.470 15 O -0.515 6.515 16 C -0.261 4.261 17 C 0.120 3.880 18 N -0.282 5.282 19 N -0.365 5.365 20 C 0.090 3.910 21 C 0.357 3.643 22 N -0.392 5.392 23 C 0.062 3.938 24 C -0.205 4.205 25 C -0.169 4.169 26 C -0.038 4.038 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.041 0.959 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.269 0.731 33 H 0.210 0.790 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.142 0.858 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.250 7.231 -9.339 21.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.146 3.854 4 H 0.065 0.935 5 C -0.562 4.562 6 H 0.105 0.895 7 C -0.123 4.123 8 N -0.525 5.525 9 Si 0.705 3.295 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.184 1.184 13 O -0.249 6.249 14 C 0.374 3.626 15 O -0.406 6.406 16 C -0.275 4.275 17 C -0.067 4.067 18 N -0.102 5.102 19 N -0.147 5.147 20 C -0.050 4.050 21 C 0.134 3.866 22 N -0.071 5.071 23 C -0.064 4.064 24 C -0.228 4.228 25 C -0.194 4.194 26 C -0.161 4.161 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.226 0.774 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.186 0.814 38 H 0.161 0.839 39 H 0.160 0.840 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.212 7.688 -10.390 22.333 hybrid contribution -0.317 -0.751 1.684 1.870 sum -18.529 6.938 -8.706 21.616 Atomic orbital electron populations 1.21897 0.97080 0.99926 1.01699 1.22355 0.94335 0.99634 1.02193 1.20967 0.96243 0.87967 0.80194 0.93490 1.20794 0.87730 1.39816 1.07867 0.89465 1.24719 0.94918 0.95284 0.97343 1.69832 1.08503 1.44385 1.29798 0.87011 0.81092 0.80106 0.81308 1.19950 1.21743 1.18426 1.86554 1.33524 1.62423 1.42398 1.19608 0.80861 0.76243 0.85871 1.90828 1.55575 1.59390 1.34818 1.19184 0.95624 1.15592 0.97144 1.24239 0.99431 0.94068 0.88985 1.77320 0.93433 1.19715 1.19718 1.48586 1.17382 1.42345 1.06357 1.22143 0.87209 0.95511 1.00168 1.17793 0.89134 0.96978 0.82690 1.40582 1.28714 1.10165 1.27601 1.22043 0.96301 0.94544 0.93492 1.20957 1.03225 0.94961 1.03672 1.20964 1.01866 0.96939 0.99656 1.21836 1.00024 0.89487 1.04799 0.93708 0.92421 0.94015 0.91829 0.91231 0.92085 0.77353 0.89946 0.89034 0.88175 0.81402 0.83880 0.84038 0.82152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.56 37.16 0.32 -2.52 16 2 C -0.15 -3.28 5.15 -26.74 -0.14 -3.42 16 3 C 0.20 4.94 1.84 -27.89 -0.05 4.89 16 4 H 0.05 1.24 6.22 -51.93 -0.32 0.91 16 5 C -0.52 -14.84 9.48 -34.44 -0.33 -15.17 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 7 C 0.08 2.30 5.45 -17.82 -0.10 2.20 16 8 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 9 Si 0.88 21.50 24.41 -169.99 -4.15 17.35 16 10 H -0.27 -6.42 6.83 56.52 0.39 -6.03 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.26 -6.27 6.53 56.52 0.37 -5.90 16 13 O -0.33 -7.47 9.65 -40.80 -0.39 -7.87 16 14 C 0.53 10.62 6.37 34.21 0.22 10.84 16 15 O -0.52 -10.88 10.54 -19.32 -0.20 -11.09 16 16 C -0.26 -4.35 6.13 -104.88 -0.64 -5.00 16 17 C 0.12 1.73 11.86 -16.97 -0.20 1.53 16 18 N -0.28 -3.85 12.47 30.87 0.39 -3.47 16 19 N -0.36 -4.49 3.99 -66.64 -0.27 -4.76 16 20 C 0.09 0.67 11.30 59.85 0.68 1.34 16 21 C 0.36 5.23 7.11 -153.07 -1.09 4.14 16 22 N -0.39 -5.50 2.79 -62.22 -0.17 -5.67 16 23 C 0.06 0.91 8.95 -16.58 -0.15 0.76 16 24 C -0.20 -2.63 10.86 -39.75 -0.43 -3.06 16 25 C -0.17 -1.93 10.86 -39.75 -0.43 -2.36 16 26 C -0.04 -0.44 9.93 -16.59 -0.16 -0.60 16 27 H 0.04 0.83 6.06 -51.93 -0.31 0.51 16 28 H 0.06 1.14 7.79 -51.93 -0.40 0.73 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.47 3.22 -51.93 -0.17 1.30 16 31 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.21 2.59 8.06 -52.49 -0.42 2.17 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.55 5.41 -51.93 -0.28 0.27 16 36 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.17 2.55 7.15 -52.49 -0.38 2.18 16 38 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.16 1.39 6.91 -52.48 -0.36 1.02 16 LS Contribution 327.97 15.07 4.94 4.94 Total: -1.00 -32.97 327.97 -6.39 -39.36 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.79 Total: 3.46 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.51 Total: -6.43 kcal Atomic # 7 Polarization: -40.44 SS G_CDS: 0.72 Total: -39.72 kcal Atomic # 8 Polarization: -18.36 SS G_CDS: -0.60 Total: -18.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.15 Total: 17.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.97 -6.39 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188110577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.174 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds