Wall clock time and date at job start Tue Mar 31 2020 08:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34812 * 116.99720 * 89.99471 * 13 3 2 15 15 O 1.21576 * 120.00299 * 0.02562 * 14 13 3 16 16 C 1.46848 * 119.99454 * 180.02562 * 14 13 3 17 17 C 1.41433 * 126.50416 * 0.02835 * 16 14 13 18 18 N 1.30335 * 108.15453 * 180.02562 * 17 16 14 19 19 N 1.39898 * 109.17601 * 359.97438 * 18 17 16 20 20 C 1.46499 * 125.74646 * 179.97438 * 19 18 17 21 21 C 1.34716 * 108.50549 * 359.72750 * 19 18 17 22 22 N 1.38945 * 126.41726 * 180.29582 * 21 19 18 23 23 C 1.36742 * 125.68888 * 134.84992 * 22 21 19 24 24 C 1.34790 * 108.18305 * 179.86706 * 23 22 21 25 25 C 1.41026 * 107.50522 * 0.39227 * 24 23 22 26 26 C 1.34783 * 107.50424 * 359.75310 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 33 33 H 1.07996 * 125.91794 * 359.97438 * 17 16 14 34 34 H 1.09001 * 109.47319 * 90.02517 * 20 19 18 35 35 H 1.09003 * 109.47315 * 210.02501 * 20 19 18 36 36 H 1.09000 * 109.47291 * 330.02307 * 20 19 18 37 37 H 1.07989 * 125.90772 * 0.02562 * 23 22 21 38 38 H 1.07996 * 126.24264 * 180.17923 * 24 23 22 39 39 H 1.08001 * 126.24457 * 179.79330 * 25 24 23 40 40 H 1.08006 * 125.90074 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 8 1.6559 2.0917 -1.2407 14 6 0.4676 2.7281 -1.2559 15 8 -0.2283 2.7405 -0.2591 16 6 0.0138 3.4066 -2.4767 17 6 0.7078 3.4782 -3.7070 18 7 -0.0186 4.1646 -4.5436 19 7 -1.1987 4.5639 -3.9072 20 6 -2.2732 5.3536 -4.5139 21 6 -1.1832 4.0953 -2.6443 22 7 -2.1752 4.2702 -1.6873 23 6 -2.6709 3.2966 -0.8650 24 6 -3.6136 3.8511 -0.0772 25 6 -3.7125 5.2133 -0.4287 26 6 -2.8229 5.4432 -1.4147 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 5.8770 0.4816 2.1128 33 1 1.6727 3.0408 -3.9164 34 1 -3.0001 4.6847 -4.9748 35 1 -2.7646 5.9498 -3.7450 36 1 -1.8546 6.0139 -5.2734 37 1 -2.3590 2.2628 -0.8477 38 1 -4.1904 3.3439 0.6820 39 1 -4.3790 5.9397 0.0123 40 1 -2.6516 6.3901 -1.9051 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188110577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:01 Heat of formation + Delta-G solvation = 43.515870 kcal Electronic energy + Delta-G solvation = -25246.767712 eV Core-core repulsion = 21643.732257 eV Total energy + Delta-G solvation = -3603.035455 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.31489 -41.61161 -41.05056 -37.64202 -35.51918 -34.88459 -33.97279 -33.74188 -30.37240 -29.89084 -29.63634 -28.30865 -25.22892 -24.34211 -23.11260 -22.85634 -21.74492 -21.19088 -20.59765 -19.70372 -18.87493 -18.43118 -17.64641 -17.30547 -16.78324 -16.43591 -16.26607 -15.43499 -15.27831 -15.21713 -15.02656 -14.78500 -14.30708 -14.18946 -13.88667 -13.79865 -13.63162 -13.50734 -13.31788 -13.13647 -13.05565 -12.99780 -12.57461 -12.30808 -12.00175 -11.55911 -11.48950 -11.25335 -11.10573 -11.09977 -10.71289 -10.24882 -9.55465 -9.21153 -8.42846 -6.50871 -0.26262 0.66978 0.81694 1.24201 1.26681 1.32220 1.41895 1.77700 2.00326 2.04717 2.12616 2.21155 2.89753 3.23630 3.62442 3.75246 3.87709 4.11148 4.14648 4.19943 4.21406 4.24515 4.30973 4.42473 4.50394 4.57429 4.62396 4.64469 4.95588 4.98475 5.06059 5.06670 5.20817 5.27269 5.31863 5.35911 5.38704 5.67669 5.86145 6.01602 6.17693 6.22795 6.29921 6.53266 6.95145 7.14622 8.73082 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.018964 B = 0.004706 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.104139 B = 5947.984071 C = 6859.554680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.145 4.145 3 C 0.206 3.794 4 H 0.029 0.971 5 C -0.538 4.538 6 H 0.047 0.953 7 C 0.032 3.968 8 N -0.931 5.931 9 Si 0.936 3.064 10 H -0.250 1.250 11 H -0.285 1.285 12 H -0.255 1.255 13 O -0.346 6.346 14 C 0.528 3.472 15 O -0.530 6.530 16 C -0.297 4.297 17 C 0.119 3.881 18 N -0.283 5.283 19 N -0.350 5.350 20 C 0.077 3.923 21 C 0.366 3.634 22 N -0.400 5.400 23 C 0.028 3.972 24 C -0.203 4.203 25 C -0.172 4.172 26 C -0.037 4.037 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.274 0.726 33 H 0.219 0.781 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.121 0.879 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.171 0.829 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.222 7.929 -9.639 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.183 4.183 3 C 0.152 3.848 4 H 0.047 0.953 5 C -0.576 4.576 6 H 0.065 0.935 7 C -0.168 4.168 8 N -0.569 5.569 9 Si 0.761 3.239 10 H -0.175 1.175 11 H -0.212 1.212 12 H -0.179 1.179 13 O -0.262 6.262 14 C 0.374 3.626 15 O -0.421 6.421 16 C -0.312 4.312 17 C -0.067 4.067 18 N -0.103 5.103 19 N -0.132 5.132 20 C -0.061 4.061 21 C 0.140 3.860 22 N -0.080 5.080 23 C -0.098 4.098 24 C -0.227 4.227 25 C -0.196 4.196 26 C -0.160 4.160 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.236 0.764 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.139 0.861 37 H 0.169 0.831 38 H 0.175 0.825 39 H 0.189 0.811 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.216 8.404 -10.730 25.217 hybrid contribution 0.541 -0.807 1.665 1.928 sum -20.675 7.597 -9.065 23.819 Atomic orbital electron populations 1.21786 0.94479 1.01862 1.01373 1.22254 0.96584 0.97389 1.02064 1.20622 0.93795 0.89673 0.80717 0.95284 1.20990 0.89749 1.39670 1.07184 0.93458 1.25523 0.96025 0.95600 0.99605 1.69956 1.10368 1.45613 1.30972 0.86034 0.79380 0.80330 0.78118 1.17534 1.21209 1.17917 1.86529 1.35352 1.63205 1.41125 1.20069 0.79747 0.75783 0.87014 1.90807 1.55597 1.60027 1.35700 1.19067 0.97597 1.17887 0.96651 1.24378 0.99900 0.94144 0.88328 1.77296 0.93925 1.19517 1.19535 1.48977 1.17526 1.41298 1.05356 1.22642 0.86370 0.95902 1.01220 1.17777 0.88551 0.96045 0.83629 1.40720 1.28777 1.10891 1.27608 1.22013 0.97976 0.94509 0.95265 1.21292 1.02406 0.95923 1.03071 1.21353 1.02126 0.96681 0.99417 1.22457 0.99114 0.89697 1.04708 0.93658 0.93193 0.90843 0.92331 0.90898 0.91614 0.76445 0.88296 0.87206 0.86107 0.83057 0.82537 0.81135 0.79084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.09 8.56 71.98 0.62 -4.47 16 2 C -0.15 -6.40 5.15 30.59 0.16 -6.24 16 3 C 0.21 10.44 1.84 29.85 0.06 10.49 16 4 H 0.03 1.58 6.22 -2.39 -0.01 1.56 16 5 C -0.54 -31.75 9.48 25.60 0.24 -31.50 16 6 H 0.05 3.07 8.06 -2.91 -0.02 3.05 16 7 C 0.03 1.87 5.45 84.66 0.46 2.33 16 8 N -0.93 -57.30 13.96 21.45 0.30 -57.01 16 9 Si 0.94 44.45 24.41 68.60 1.67 46.12 16 10 H -0.25 -10.93 6.83 99.48 0.68 -10.25 16 11 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 12 H -0.25 -11.84 6.53 99.48 0.65 -11.19 16 13 O -0.35 -16.07 9.65 -57.24 -0.55 -16.63 16 14 C 0.53 21.66 6.37 70.07 0.45 22.11 16 15 O -0.53 -22.77 10.54 19.59 0.21 -22.57 16 16 C -0.30 -9.97 6.13 -20.03 -0.12 -10.09 16 17 C 0.12 3.44 11.86 85.70 1.02 4.46 16 18 N -0.28 -7.34 12.47 -56.24 -0.70 -8.04 16 19 N -0.35 -7.88 3.99 -364.76 -1.46 -9.33 16 20 C 0.08 0.87 11.30 127.77 1.44 2.31 16 21 C 0.37 10.29 7.11 132.37 0.94 11.23 16 22 N -0.40 -10.62 2.79 -350.75 -0.98 -11.60 16 23 C 0.03 0.80 8.95 83.14 0.74 1.54 16 24 C -0.20 -4.88 10.86 22.16 0.24 -4.63 16 25 C -0.17 -3.39 10.86 22.16 0.24 -3.15 16 26 C -0.04 -0.75 9.93 83.14 0.83 0.07 16 27 H 0.04 1.65 6.06 -2.39 -0.01 1.64 16 28 H 0.05 1.91 7.79 -2.39 -0.02 1.89 16 29 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 30 H 0.06 2.62 3.22 -2.39 -0.01 2.61 16 31 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 33 H 0.22 5.55 8.06 -2.91 -0.02 5.53 16 34 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.11 0.87 5.41 -2.39 -0.01 0.85 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.15 4.71 7.15 -2.92 -0.02 4.69 16 38 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 39 H 0.17 2.30 8.06 -2.91 -0.02 2.27 16 40 H 0.19 2.49 6.91 -2.91 -0.02 2.47 16 Total: -1.00 -73.69 327.97 6.78 -66.90 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.98 Total: 17.70 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 7.31 Total: -5.55 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.84 Total: -85.98 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.35 Total: -39.19 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.67 Total: 46.12 kcal Total: -73.69 6.78 -66.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188110577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.417 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds