Wall clock time and date at job start Tue Mar 31 2020 08:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00068 * 3 2 1 14 14 C 1.34781 * 119.99836 * 85.00165 * 13 3 2 15 15 O 1.21281 * 119.99724 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99965 * 180.02562 * 14 13 3 17 17 H 1.08995 * 110.86074 * 58.79222 * 16 14 13 18 18 C 1.54740 * 110.96827 * 294.99569 * 16 14 13 19 19 C 1.51686 * 102.55394 * 266.10768 * 18 16 14 20 20 C 1.47644 * 125.86690 * 164.58678 * 19 18 16 21 21 C 1.40050 * 120.56279 * 180.02562 * 20 19 18 22 22 C 1.38344 * 118.28269 * 179.97438 * 21 20 19 23 23 C 1.38348 * 119.31765 * 0.02562 * 22 21 20 24 24 N 1.31917 * 121.08295 * 0.02562 * 23 22 21 25 25 C 1.31699 * 121.88756 * 359.67915 * 24 23 22 26 26 N 1.29087 * 108.26825 * 344.61172 * 19 18 16 27 27 O 1.41396 * 112.87038 * 359.67694 * 26 19 18 28 28 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 30 30 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 31 31 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 32 32 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 33 33 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00203 * 264.99839 * 13 3 2 35 35 H 1.09002 * 110.79567 * 24.37782 * 18 16 14 36 36 H 1.09001 * 110.79011 * 147.84592 * 18 16 14 37 37 H 1.07994 * 120.85754 * 359.97438 * 21 20 19 38 38 H 1.08010 * 120.34144 * 180.02562 * 22 21 20 39 39 H 1.07995 * 119.46130 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.72226 * 180.30901 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.0799 2.6372 -3.4886 18 6 0.9189 4.5790 -2.9272 19 6 0.0965 5.7057 -2.3313 20 6 0.5861 7.0635 -2.0207 21 6 -0.2736 8.0217 -1.4692 22 6 0.2350 9.2790 -1.1962 23 6 1.5634 9.5474 -1.4744 24 7 2.3500 8.6253 -1.9950 25 6 1.9148 7.4125 -2.2673 26 7 -1.1050 5.2733 -2.1419 27 8 -1.2747 3.9283 -2.5439 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8292 -0.0567 2.9522 34 1 2.2719 2.1232 -1.9978 35 1 1.8791 4.4902 -2.4189 36 1 1.0589 4.7267 -3.9980 37 1 -1.3068 7.7852 -1.2624 38 1 -0.3985 10.0431 -0.7703 39 1 1.9629 10.5280 -1.2618 40 1 2.5906 6.6831 -2.6887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190260232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:57 Heat of formation + Delta-G solvation = 17.948550 kcal Electronic energy + Delta-G solvation = -24466.613699 eV Core-core repulsion = 20862.469562 eV Total energy + Delta-G solvation = -3604.144137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85537 -40.03077 -38.34750 -35.12311 -34.17113 -32.70777 -32.39962 -31.46763 -30.68035 -30.21242 -27.09018 -24.94086 -24.34698 -23.47355 -22.84220 -20.74119 -20.11634 -19.45475 -17.85615 -17.50432 -16.77721 -16.40281 -16.05614 -15.64135 -15.37747 -14.95978 -14.63067 -14.36729 -14.04724 -13.90200 -13.44194 -13.37060 -13.03768 -12.76907 -12.72072 -12.18945 -12.12748 -11.77637 -11.45730 -11.31890 -11.02137 -10.95119 -10.89714 -10.68261 -10.34435 -10.24229 -9.98085 -9.81938 -9.67450 -9.21072 -9.10458 -8.71022 -8.55369 -7.93763 -6.17813 -4.27948 0.31508 0.95623 2.02738 2.82605 3.19939 3.22108 3.28508 3.30262 3.56318 3.72626 3.78767 4.14781 4.27528 4.30620 4.42644 4.56656 4.62934 4.82109 4.95958 5.06990 5.13701 5.21071 5.34199 5.40061 5.46055 5.61980 5.82850 5.86802 6.30828 6.35638 6.41619 6.61626 6.98667 7.12892 7.21835 7.29532 7.35172 7.55500 7.61961 7.65328 7.82834 8.11496 8.52503 8.69881 8.98893 9.39473 10.87557 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004324 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.562992 B = 6473.779503 C = 7973.612710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.703 5.703 14 C 0.484 3.516 15 O -0.522 6.522 16 C 0.023 3.977 17 H 0.138 0.862 18 C -0.140 4.140 19 C 0.119 3.881 20 C -0.086 4.086 21 C -0.038 4.038 22 C -0.174 4.174 23 C 0.112 3.888 24 N -0.482 5.482 25 C 0.136 3.864 26 N -0.269 5.269 27 O -0.161 6.161 28 H 0.024 0.976 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.032 0.968 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.972 13.661 -11.327 17.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.353 5.353 14 C 0.266 3.734 15 O -0.398 6.398 16 C -0.040 4.040 17 H 0.155 0.845 18 C -0.180 4.180 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.065 4.065 22 C -0.194 4.194 23 C -0.045 4.045 24 N -0.190 5.190 25 C -0.024 4.024 26 N -0.008 5.008 27 O -0.181 6.181 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.220 0.780 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.178 0.822 40 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.884 13.812 -10.307 17.666 hybrid contribution 1.187 -0.726 -0.272 1.418 sum -2.697 13.086 -10.579 17.042 Atomic orbital electron populations 1.21843 0.98291 0.98176 1.01224 1.21941 0.92619 0.99702 1.02370 1.18826 0.94328 0.89206 0.80661 0.93348 1.21233 0.90503 1.39251 1.06404 0.91976 1.24891 0.98657 0.94746 0.95330 1.69909 1.35102 1.37566 1.09201 0.86403 0.84760 0.77830 0.78172 1.19693 1.20862 1.20834 1.46483 1.14114 1.55902 1.18768 1.20428 0.83515 0.80551 0.88876 1.90735 1.51003 1.58602 1.39458 1.23780 0.84625 0.96539 0.99056 0.84501 1.23018 1.01704 0.89343 1.03902 1.23972 0.93328 0.94334 0.95488 1.18824 0.95663 0.90442 1.03964 1.21832 1.00419 0.92005 0.92287 1.22140 0.97386 0.97602 1.02280 1.22976 0.90324 0.98574 0.92666 1.67751 1.37888 1.01503 1.11892 1.22991 0.91946 0.93460 0.93973 1.78359 1.17998 0.94366 1.10117 1.91307 1.23989 1.16255 1.86518 0.95700 0.93172 0.94379 0.94924 0.88230 0.92542 0.77965 0.86826 0.86769 0.83782 0.84039 0.82229 0.81863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.05 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.61 2.24 -69.08 -0.15 6.45 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.54 -13.60 8.73 -34.44 -0.30 -13.91 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.29 11.31 55.43 0.63 -23.67 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 N -0.70 -13.61 4.87 -54.93 -0.27 -13.88 16 14 C 0.48 9.36 5.75 -10.98 -0.06 9.30 16 15 O -0.52 -12.56 13.72 -13.29 -0.18 -12.74 16 16 C 0.02 0.33 4.23 -26.97 -0.11 0.21 16 17 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 18 C -0.14 -1.57 5.83 -26.48 -0.15 -1.72 16 19 C 0.12 1.60 7.17 -79.42 -0.57 1.03 16 20 C -0.09 -1.01 5.89 -104.88 -0.62 -1.62 16 21 C -0.04 -0.40 9.82 -38.86 -0.38 -0.78 16 22 C -0.17 -1.46 10.10 -39.50 -0.40 -1.86 16 23 C 0.11 0.99 11.17 -17.47 -0.20 0.80 16 24 N -0.48 -5.38 10.35 -12.90 -0.13 -5.52 16 25 C 0.14 1.47 10.79 -17.11 -0.18 1.29 16 26 N -0.27 -4.40 12.19 35.30 0.43 -3.97 16 27 O -0.16 -2.81 11.82 -30.22 -0.36 -3.16 16 28 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.05 1.21 7.85 -51.93 -0.41 0.81 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.10 2.64 5.96 -51.93 -0.31 2.33 16 33 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.39 6.21 8.54 -40.82 -0.35 5.86 16 35 H 0.11 1.21 7.61 -51.93 -0.40 0.82 16 36 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.14 1.48 7.92 -52.49 -0.42 1.07 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.16 1.40 7.39 -52.49 -0.39 1.01 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -33.48 339.29 -7.88 -41.36 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.03 Total: 6.50 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -3.06 Total: -5.13 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.66 Total: -47.03 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.54 Total: -15.91 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.48 -7.88 -41.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190260232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.309 kcal (2) G-P(sol) polarization free energy of solvation -33.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds