Wall clock time and date at job start Tue Mar 31 2020 08:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 N 1.46497 * 109.47133 * 295.00068 * 3 2 1 14 14 C 1.34781 * 119.99836 * 85.00165 * 13 3 2 15 15 O 1.21281 * 119.99724 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99965 * 180.02562 * 14 13 3 17 17 H 1.08995 * 110.86074 * 58.79222 * 16 14 13 18 18 C 1.54740 * 110.96827 * 294.99569 * 16 14 13 19 19 C 1.51686 * 102.55394 * 266.10768 * 18 16 14 20 20 C 1.47644 * 125.86690 * 164.58678 * 19 18 16 21 21 C 1.40050 * 120.56279 * 180.02562 * 20 19 18 22 22 C 1.38344 * 118.28269 * 179.97438 * 21 20 19 23 23 C 1.38348 * 119.31765 * 0.02562 * 22 21 20 24 24 N 1.31917 * 121.08295 * 0.02562 * 23 22 21 25 25 C 1.31699 * 121.88756 * 359.67915 * 24 23 22 26 26 N 1.29087 * 108.26825 * 344.61172 * 19 18 16 27 27 O 1.41396 * 112.87038 * 359.67694 * 26 19 18 28 28 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 30 30 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 31 31 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 32 32 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 33 33 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 34 34 H 0.97000 * 120.00203 * 264.99839 * 13 3 2 35 35 H 1.09002 * 110.79567 * 24.37782 * 18 16 14 36 36 H 1.09001 * 110.79011 * 147.84592 * 18 16 14 37 37 H 1.07994 * 120.85754 * 359.97438 * 21 20 19 38 38 H 1.08010 * 120.34144 * 180.02562 * 22 21 20 39 39 H 1.07995 * 119.46130 * 180.02562 * 23 22 21 40 40 H 1.07997 * 119.72226 * 180.30901 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 7 1.6525 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3395 2.6319 -0.4342 16 6 0.0362 3.3377 -2.6547 17 1 0.0799 2.6372 -3.4886 18 6 0.9189 4.5790 -2.9272 19 6 0.0965 5.7057 -2.3313 20 6 0.5861 7.0635 -2.0207 21 6 -0.2736 8.0217 -1.4692 22 6 0.2350 9.2790 -1.1962 23 6 1.5634 9.5474 -1.4744 24 7 2.3500 8.6253 -1.9950 25 6 1.9148 7.4125 -2.2673 26 7 -1.1050 5.2733 -2.1419 27 8 -1.2747 3.9283 -2.5439 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8292 -0.0567 2.9522 34 1 2.2719 2.1232 -1.9978 35 1 1.8791 4.4902 -2.4189 36 1 1.0589 4.7267 -3.9980 37 1 -1.3068 7.7852 -1.2624 38 1 -0.3985 10.0431 -0.7703 39 1 1.9629 10.5280 -1.2618 40 1 2.5906 6.6831 -2.6887 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190260232.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:11:56 Heat of formation + Delta-G solvation = -5.024684 kcal Electronic energy + Delta-G solvation = -24467.609893 eV Core-core repulsion = 20862.469562 eV Total energy + Delta-G solvation = -3605.140331 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94936 -40.97345 -39.81663 -36.93669 -35.18101 -34.42673 -33.34954 -33.07163 -31.65255 -31.48806 -28.95470 -26.15136 -25.21907 -24.86807 -24.13914 -22.21090 -21.31062 -21.14051 -19.35174 -18.38041 -17.93303 -17.58821 -17.24097 -17.20121 -16.62999 -16.34336 -16.03972 -15.74063 -15.10885 -14.99417 -14.65073 -14.48808 -14.29272 -14.15006 -14.02996 -13.57390 -13.45104 -13.19745 -13.05062 -12.88560 -12.77617 -12.69201 -12.20609 -12.08184 -11.95808 -11.74299 -11.60325 -11.06093 -10.86435 -10.58747 -10.57556 -10.42368 -9.80742 -9.69833 -8.16368 -6.33986 -0.52306 0.20510 1.09914 1.45005 1.46664 1.57745 1.59166 1.92101 2.28843 2.49542 2.78927 2.84345 3.13955 3.23085 3.34340 3.55057 3.81143 3.82586 3.92665 4.06114 4.14421 4.32562 4.44441 4.46815 4.53250 4.54121 4.68742 4.72847 4.76809 5.02575 5.03244 5.12752 5.22337 5.40089 5.51810 5.59650 5.60207 5.76187 5.88613 6.14302 6.17569 6.74173 6.87348 6.90004 7.32520 7.51114 8.89397 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.013308 B = 0.004324 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.562992 B = 6473.779503 C = 7973.612710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.008 1.008 5 C -0.544 4.544 6 H 0.079 0.921 7 C 0.015 3.985 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.255 1.255 11 H -0.288 1.288 12 H -0.281 1.281 13 N -0.693 5.693 14 C 0.479 3.521 15 O -0.577 6.577 16 C 0.027 3.973 17 H 0.179 0.821 18 C -0.132 4.132 19 C 0.132 3.868 20 C -0.111 4.111 21 C -0.052 4.052 22 C -0.167 4.167 23 C 0.114 3.886 24 N -0.505 5.505 25 C 0.136 3.864 26 N -0.315 5.315 27 O -0.192 6.192 28 H 0.046 0.954 29 H 0.019 0.981 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.408 0.592 35 H 0.122 0.878 36 H 0.164 0.836 37 H 0.139 0.861 38 H 0.173 0.827 39 H 0.193 0.807 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 15.127 -13.594 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.010 0.990 5 C -0.582 4.582 6 H 0.097 0.903 7 C -0.185 4.185 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.179 1.179 11 H -0.214 1.214 12 H -0.207 1.207 13 N -0.344 5.344 14 C 0.264 3.736 15 O -0.457 6.457 16 C -0.035 4.035 17 H 0.196 0.804 18 C -0.171 4.171 19 C -0.058 4.058 20 C -0.114 4.114 21 C -0.079 4.079 22 C -0.187 4.187 23 C -0.043 4.043 24 N -0.213 5.213 25 C -0.023 4.023 26 N -0.057 5.057 27 O -0.209 6.209 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.244 0.756 35 H 0.141 0.859 36 H 0.182 0.818 37 H 0.157 0.843 38 H 0.191 0.809 39 H 0.210 0.790 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -1.902 15.277 -12.637 19.917 hybrid contribution 0.566 -1.029 0.483 1.270 sum -1.335 14.247 -12.154 18.775 Atomic orbital electron populations 1.21680 0.97381 0.99105 0.99953 1.21796 0.93315 0.99299 1.01580 1.18368 0.93878 0.89018 0.81130 0.99024 1.21603 0.91037 1.38768 1.06761 0.90289 1.25787 1.03271 0.94433 0.95050 1.70074 1.37067 1.38615 1.09833 0.85331 0.79157 0.77762 0.78298 1.17855 1.21431 1.20651 1.46153 1.14913 1.55528 1.17791 1.21401 0.82450 0.79551 0.90167 1.90714 1.52506 1.60456 1.42021 1.23921 0.84620 0.98205 0.96749 0.80371 1.23165 1.00620 0.86472 1.06856 1.24474 0.92896 0.95337 0.93082 1.18938 0.96528 0.90055 1.05878 1.22021 1.00364 0.93042 0.92506 1.22469 0.97706 0.97257 1.01226 1.23591 0.90323 0.99394 0.90950 1.67826 1.38666 1.01966 1.12885 1.23281 0.91662 0.93911 0.93472 1.78383 1.19909 0.94084 1.13346 1.91275 1.25574 1.17278 1.86811 0.93494 0.96168 0.93905 0.93411 0.91086 0.92713 0.75561 0.85949 0.81836 0.84349 0.80940 0.79011 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 8.51 71.98 0.61 -5.08 16 2 C -0.12 -5.88 5.45 30.60 0.17 -5.71 16 3 C 0.28 13.90 2.24 44.25 0.10 14.00 16 4 H -0.01 -0.50 7.58 -2.39 -0.02 -0.51 16 5 C -0.54 -27.43 8.73 25.60 0.22 -27.20 16 6 H 0.08 3.63 7.74 -2.91 -0.02 3.61 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.01 11.31 21.45 0.24 -51.77 16 9 Si 0.97 40.84 29.54 68.60 2.03 42.86 16 10 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.69 -26.41 4.87 -446.10 -2.17 -28.58 16 14 C 0.48 18.53 5.75 87.66 0.50 19.04 16 15 O -0.58 -28.98 13.72 14.99 0.21 -28.77 16 16 C 0.03 0.74 4.23 30.44 0.13 0.87 16 17 H 0.18 3.31 8.14 -2.39 -0.02 3.29 16 18 C -0.13 -2.59 5.83 30.76 0.18 -2.41 16 19 C 0.13 3.41 7.17 45.76 0.33 3.74 16 20 C -0.11 -2.48 5.89 -20.03 -0.12 -2.59 16 21 C -0.05 -1.06 9.82 22.73 0.22 -0.84 16 22 C -0.17 -2.43 10.10 22.32 0.23 -2.20 16 23 C 0.11 1.71 11.17 84.71 0.95 2.65 16 24 N -0.51 -10.09 10.35 -194.73 -2.01 -12.11 16 25 C 0.14 2.66 10.79 85.03 0.92 3.58 16 26 N -0.32 -10.40 12.19 -42.23 -0.51 -10.91 16 27 O -0.19 -6.70 11.82 -20.31 -0.24 -6.94 16 28 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 30 H 0.04 1.90 5.64 -2.39 -0.01 1.88 16 31 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 32 H 0.07 3.90 5.96 -2.39 -0.01 3.88 16 33 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.41 12.12 8.54 -92.71 -0.79 11.33 16 35 H 0.12 2.24 7.61 -2.39 -0.02 2.22 16 36 H 0.16 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.14 2.91 7.92 -2.91 -0.02 2.88 16 38 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.18 2.62 7.39 -2.91 -0.02 2.60 16 Total: -1.00 -77.65 339.29 2.70 -74.95 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 0.28 Total: 22.22 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: 4.88 Total: -0.95 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -4.46 Total: -103.37 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -0.03 Total: -35.72 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.86 kcal Total: -77.65 2.70 -74.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190260232.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.928 kcal (2) G-P(sol) polarization free energy of solvation -77.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds