Wall clock time and date at job start Tue Mar 31 2020 08:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53008 * 109.46882 * 2 1 4 4 N 1.46498 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.36839 * 119.99708 * 261.78368 * 4 3 2 6 6 H 1.08007 * 119.99774 * 196.19196 * 5 4 3 7 7 C 1.39046 * 120.00194 * 16.19259 * 5 4 3 8 8 N 1.31365 * 120.00373 * 12.31444 * 7 5 4 9 9 Si 1.86805 * 119.99949 * 192.31519 * 7 5 4 10 10 H 1.48506 * 109.47020 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46898 * 119.99675 * 9 7 5 12 12 H 1.48498 * 109.47112 * 240.00104 * 9 7 5 13 13 C 1.34776 * 119.99842 * 81.78629 * 4 3 2 14 14 O 1.21677 * 119.99662 * 181.58257 * 13 4 3 15 15 C 1.47056 * 120.00131 * 1.57792 * 13 4 3 16 16 C 1.38243 * 126.75926 * 170.42763 * 15 13 4 17 17 C 1.40849 * 105.28229 * 179.89672 * 16 15 13 18 18 C 1.47907 * 126.23568 * 180.15206 * 17 16 15 19 19 C 1.35886 * 125.92863 * 179.97438 * 18 17 16 20 20 C 1.40986 * 106.74512 * 179.91195 * 19 18 17 21 21 C 1.34698 * 107.02299 * 0.35571 * 20 19 18 22 22 C 1.50700 * 125.67004 * 179.74062 * 21 20 19 23 23 O 1.34339 * 108.66322 * 359.78268 * 21 20 19 24 24 N 1.31825 * 107.53218 * 0.37331 * 17 16 15 25 25 N 1.28406 * 110.78880 * 359.76123 * 24 17 16 26 26 H 0.97003 * 125.04807 * 179.97438 * 25 24 17 27 27 H 1.08996 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47266 * 300.00352 * 1 2 3 29 29 H 1.09000 * 109.47105 * 60.00037 * 1 2 3 30 30 H 1.08999 * 109.47097 * 240.00174 * 2 1 3 31 31 H 1.09004 * 109.46923 * 119.99497 * 2 1 3 32 32 H 1.09001 * 109.46717 * 59.99824 * 3 2 1 33 33 H 1.08995 * 109.46738 * 299.99354 * 3 2 1 34 34 H 0.96997 * 120.00508 * 180.02562 * 8 7 5 35 35 H 1.08000 * 127.35794 * 359.97438 * 16 15 13 36 36 H 1.08000 * 126.62908 * 0.02562 * 19 18 17 37 37 H 1.08002 * 126.49168 * 180.13622 * 20 19 18 38 38 H 1.08991 * 109.47330 * 180.02562 * 22 21 20 39 39 H 1.09003 * 109.47337 * 300.02126 * 22 21 20 40 40 H 1.08998 * 109.46796 * 60.02086 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1887 1.6121 1.1738 6 1 5.2366 1.8728 1.1553 7 6 3.5343 1.4486 2.3897 8 7 2.3405 0.9015 2.4249 9 14 4.3527 2.0070 3.9734 10 1 5.6843 2.5873 3.6645 11 1 3.5066 3.0342 4.6323 12 1 4.5176 0.8441 4.8821 13 6 4.1794 1.2756 -1.1543 14 8 5.3958 1.2467 -1.1498 15 6 3.4450 1.1282 -2.4199 16 6 3.9821 1.1349 -3.6936 17 6 2.8855 0.9594 -4.5599 18 6 2.9395 0.8939 -6.0365 19 6 1.8770 0.7239 -6.8665 20 6 2.3849 0.7237 -8.1817 21 6 3.7191 0.8839 -8.0892 22 6 4.6802 0.9382 -9.2487 23 8 4.0509 0.9864 -6.7914 24 7 1.8016 0.8690 -3.8151 25 7 2.0958 0.9636 -2.5688 26 1 1.4559 0.9245 -1.8408 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 1.8838 0.7878 3.2730 35 1 5.0209 1.2489 -3.9662 36 1 0.8431 0.6124 -6.5751 37 1 1.8130 0.6122 -9.0910 38 1 5.6945 1.0748 -8.8739 39 1 4.6234 0.0066 -9.8117 40 1 4.4178 1.7725 -9.8992 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193553356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:03 Heat of formation + Delta-G solvation = 84.570054 kcal Electronic energy + Delta-G solvation = -24553.279586 eV Core-core repulsion = 20952.024374 eV Total energy + Delta-G solvation = -3601.255212 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.54963 -42.03622 -38.57646 -35.85633 -33.33265 -33.14189 -32.43355 -31.63285 -30.70240 -30.15216 -26.70776 -25.98489 -25.11009 -22.64960 -21.92163 -21.30754 -20.98071 -20.03276 -19.83764 -17.66093 -17.07487 -16.60345 -16.19978 -15.58129 -15.11212 -14.87553 -14.26337 -14.20704 -13.92417 -13.70893 -13.29516 -13.17547 -13.12597 -12.97839 -12.75004 -12.54939 -12.39866 -12.01298 -11.85698 -11.60860 -11.24687 -11.06962 -10.79364 -10.58839 -10.46292 -10.40602 -10.23942 -9.93748 -9.48686 -9.19402 -8.82758 -8.62517 -8.00128 -7.75458 -6.55537 -4.08648 1.40435 1.91696 2.47948 2.63684 3.04958 3.13904 3.20422 3.39299 3.46102 3.91129 4.08139 4.43939 4.64316 4.88495 4.90465 5.09226 5.15305 5.26574 5.30644 5.35985 5.48568 5.55880 5.64452 5.78334 5.83144 5.84729 5.99818 6.05206 6.11091 6.15783 6.30538 6.43145 6.59176 6.59781 6.76225 6.96956 7.14282 7.21515 7.36980 7.44932 7.83449 8.20149 8.31169 8.89760 9.09121 9.65410 10.41351 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.003459 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.069012 B = 8092.135099 C = 8982.439988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.147 4.147 3 C 0.103 3.897 4 N -0.426 5.426 5 C -0.296 4.296 6 H 0.110 0.890 7 C 0.028 3.972 8 N -0.871 5.871 9 Si 0.935 3.065 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.280 1.280 13 C 0.499 3.501 14 O -0.569 6.569 15 C 0.012 3.988 16 C -0.167 4.167 17 C 0.081 3.919 18 C 0.082 3.918 19 C -0.183 4.183 20 C -0.211 4.211 21 C -0.017 4.017 22 C -0.071 4.071 23 O -0.165 6.165 24 N -0.270 5.270 25 N -0.380 5.380 26 H 0.456 0.544 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.117 0.883 32 H 0.127 0.873 33 H 0.030 0.970 34 H 0.271 0.729 35 H 0.162 0.838 36 H 0.152 0.848 37 H 0.148 0.852 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.316 -0.225 -13.220 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C -0.022 4.022 4 N -0.143 5.143 5 C -0.423 4.423 6 H 0.127 0.873 7 C -0.175 4.175 8 N -0.511 5.511 9 Si 0.761 3.239 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.205 1.205 13 C 0.287 3.713 14 O -0.452 6.452 15 C -0.116 4.116 16 C -0.195 4.195 17 C -0.075 4.075 18 C 0.030 3.970 19 C -0.204 4.204 20 C -0.230 4.230 21 C -0.068 4.068 22 C -0.128 4.128 23 O -0.060 6.060 24 N -0.106 5.106 25 N -0.109 5.109 26 H 0.316 0.684 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.135 0.865 32 H 0.145 0.855 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.180 0.820 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.682 -0.362 -12.919 13.746 hybrid contribution 0.388 0.187 1.134 1.213 sum -4.294 -0.175 -11.786 12.545 Atomic orbital electron populations 1.21708 0.96317 1.01208 1.01124 1.22238 0.94857 0.97886 1.03531 1.22004 0.81526 0.97163 1.01487 1.43690 1.05053 1.59418 1.06151 1.19908 0.96941 1.43955 0.81542 0.87278 1.25387 0.96419 0.95937 0.99745 1.69932 1.13832 1.40307 1.27035 0.85713 0.79467 0.78437 0.80302 1.19044 1.20469 1.20543 1.16733 0.86949 0.85900 0.81718 1.90677 1.12235 1.56816 1.85478 1.22294 0.83980 1.07898 0.97446 1.21990 1.00050 1.08087 0.89414 1.18607 0.90651 1.09409 0.88815 1.18695 0.83849 1.06307 0.88100 1.21717 0.99734 1.07252 0.91711 1.21459 0.93751 1.09429 0.98339 1.22456 0.95430 1.06179 0.82731 1.20285 0.97366 1.03340 0.91793 1.83993 1.34189 1.71108 1.16751 1.73167 1.25571 1.20890 0.90969 1.45579 1.07906 1.51571 1.05894 0.68366 0.93009 0.91610 0.94468 0.94681 0.86515 0.85531 0.95275 0.91807 0.82022 0.83021 0.83410 0.90523 0.89775 0.89775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.78 37.16 0.36 -1.86 16 2 C -0.15 -2.79 4.66 -26.72 -0.12 -2.92 16 3 C 0.10 2.12 4.10 -4.04 -0.02 2.11 16 4 N -0.43 -10.41 2.64 -116.16 -0.31 -10.72 16 5 C -0.30 -7.65 9.40 -15.02 -0.14 -7.80 16 6 H 0.11 2.98 7.32 -52.48 -0.38 2.60 16 7 C 0.03 0.67 5.12 -17.45 -0.09 0.58 16 8 N -0.87 -20.06 8.19 55.50 0.45 -19.60 16 9 Si 0.93 19.13 29.57 -169.99 -5.03 14.10 16 10 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.50 12.47 7.54 -12.69 -0.10 12.37 16 14 O -0.57 -15.88 16.57 5.21 0.09 -15.80 16 15 C 0.01 0.26 6.50 -82.10 -0.53 -0.27 16 16 C -0.17 -3.38 10.83 -38.59 -0.42 -3.80 16 17 C 0.08 1.52 7.09 -82.92 -0.59 0.93 16 18 C 0.08 1.38 7.19 -36.47 -0.26 1.12 16 19 C -0.18 -2.66 10.82 -39.38 -0.43 -3.08 16 20 C -0.21 -2.56 10.78 -39.80 -0.43 -2.99 16 21 C -0.02 -0.21 7.32 -35.56 -0.26 -0.47 16 22 C -0.07 -0.55 10.41 36.01 0.37 -0.18 16 23 O -0.16 -2.61 10.67 4.60 0.05 -2.56 16 24 N -0.27 -5.06 12.15 33.34 0.41 -4.66 16 25 N -0.38 -7.29 5.07 33.45 0.17 -7.12 16 26 H 0.46 8.13 2.68 -190.48 -0.51 7.62 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.50 7.47 -51.93 -0.39 0.12 16 30 H 0.03 0.68 6.36 -51.93 -0.33 0.35 16 31 H 0.12 2.56 6.30 -51.93 -0.33 2.23 16 32 H 0.13 2.77 5.84 -51.93 -0.30 2.47 16 33 H 0.03 0.56 5.19 -51.93 -0.27 0.29 16 34 H 0.27 5.92 8.31 -40.82 -0.34 5.58 16 35 H 0.16 3.13 8.06 -52.49 -0.42 2.71 16 36 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 332.08 15.07 5.00 5.00 Total: -1.00 -28.80 332.08 -6.84 -35.65 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -2.65 Total: -6.26 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.72 Total: -42.10 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: 0.14 Total: -18.36 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.80 -6.84 -35.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193553356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.215 kcal (2) G-P(sol) polarization free energy of solvation -28.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds